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Conserved domains on  [gi|2488796054|ref|WP_279324106|]
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CdaR family protein [Clostridium perfringens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YbbR super family cl44443
YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other ...
 4-82 4.48e-07

YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other domains. Putative roles in cell growth, cell division, and/or virulence have been suggested for this domain.


The actual alignment was detected with superfamily member cd20206:

Pssm-ID: 411001 [Multi-domain]  Cd Length: 79  Bit Score: 44.40  E-value: 4.48e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2488796054   4 PVTTEGTLDGYTPELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSyDNIKVVSINPTEVKVT 82
Cdd:cd20206     1 PLEVRNLPEGLVVTGEPETVRVRVRGPRSLLANLSPDDIKAYVDLSGAKEGEHTLPVQVDLP-PGVEVVSVSPSTVTVT 78
 
Name Accession Description Interval E-value
YbbR cd20206
YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other ...
 4-82 4.48e-07

YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other domains. Putative roles in cell growth, cell division, and/or virulence have been suggested for this domain.


Pssm-ID: 411001 [Multi-domain]  Cd Length: 79  Bit Score: 44.40  E-value: 4.48e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2488796054   4 PVTTEGTLDGYTPELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSyDNIKVVSINPTEVKVT 82
Cdd:cd20206     1 PLEVRNLPEGLVVTGEPETVRVRVRGPRSLLANLSPDDIKAYVDLSGAKEGEHTLPVQVDLP-PGVEVVSVSPSTVTVT 78
YbbR COG4856
Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];
3-85 8.61e-06

Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];


Pssm-ID: 443884 [Multi-domain]  Cd Length: 392  Bit Score: 43.12  E-value: 8.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2488796054   3 VPVTTEGTLD--GYTP-ELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSY-DNIKVVSINPTE 78
Cdd:COG4856    41 VPVEVVNLLDpeGLVVsGELPETVTVRVRGPRSVLLSLSASDIKAYVDLSGLKPGTHTVPVKVEGNLpSGVEVVEVSPST 120


                  ....*..
gi 2488796054  79 VKVTFKK 85
Cdd:COG4856   121 ITVTLEK 127
 
Name Accession Description Interval E-value
YbbR cd20206
YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other ...
 4-82 4.48e-07

YbbR domain; YbbR domains occur as tandem repeats or in architectures together with other domains. Putative roles in cell growth, cell division, and/or virulence have been suggested for this domain.


Pssm-ID: 411001 [Multi-domain]  Cd Length: 79  Bit Score: 44.40  E-value: 4.48e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2488796054   4 PVTTEGTLDGYTPELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSyDNIKVVSINPTEVKVT 82
Cdd:cd20206     1 PLEVRNLPEGLVVTGEPETVRVRVRGPRSLLANLSPDDIKAYVDLSGAKEGEHTLPVQVDLP-PGVEVVSVSPSTVTVT 78
YbbR COG4856
Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];
3-85 8.61e-06

Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];


Pssm-ID: 443884 [Multi-domain]  Cd Length: 392  Bit Score: 43.12  E-value: 8.61e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2488796054   3 VPVTTEGTLD--GYTP-ELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSY-DNIKVVSINPTE 78
Cdd:COG4856    41 VPVEVVNLLDpeGLVVsGELPETVTVRVRGPRSVLLSLSASDIKAYVDLSGLKPGTHTVPVKVEGNLpSGVEVVEVSPST 120


                  ....*..
gi 2488796054  79 VKVTFKK 85
Cdd:COG4856   121 ITVTLEK 127
YbbR COG4856
Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];
2-82 2.20e-05

Cyclic di-AMP synthase regulator CdaR, YbbR domain [Signal transduction mechanisms];


Pssm-ID: 443884 [Multi-domain]  Cd Length: 392  Bit Score: 41.96  E-value: 2.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2488796054   2 EVPVTTEGTLDGYTPELDTKTIKVTINGPEDSVNSIDLSKFKCTIDISKLTADGGSVKPNISNSyDNIKVvsinPTEVKV 81
Cdd:COG4856   316 NIPITVENLPDGLTASISPGTVDVTVSGPKSVLDSLTASDIKAYVDLSGLGPGEYTVPVQVELP-EGVEV----PAKVTV 390


                  .
gi 2488796054  82 T 82
Cdd:COG4856   391 T 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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