NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2494689196|ref|WP_279622559|]
View 

outer membrane protein assembly factor BamA [Actinobacillus equuli]

Protein Classification

outer membrane protein assembly factor BamA( domain architecture ID 1002628)

outer membrane protein assembly factor BamA is part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane

Gene Ontology:  GO:0051205|GO:0009279|GO:0071709
PubMed:  21823654|26901871|26744406|26900875

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11067 super family cl35984
outer membrane protein assembly factor YaeT; Provisional
 16-793 0e+00

outer membrane protein assembly factor YaeT; Provisional


The actual alignment was detected with superfamily member PRK11067:

Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 924.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  16 AAAPFVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDI 95
Cdd:PRK11067   20 GAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  96 EGNSAIPKDPLQDNLKANLISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTTRAENGGVNVKLNITEGDVAYVKN 175
Cdd:PRK11067  100 SGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQ 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 176 IKFEGNQAFSSKELTKRLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYT 255
Cdd:PRK11067  180 INIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 256 LREGAQYNISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQIN 335
Cdd:PRK11067  260 ITEGDQYKLSGVQVSGNLAGHSAEIEKLTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLH 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 336 FVVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKI 415
Cdd:PRK11067  339 VNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKV 418

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 416 KERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSD 495
Cdd:PRK11067  419 KERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGVSLGGRIFYNDFEADD 498

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 496 NDTSaSYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNVEREFTREKYVKSMNF-PIVQGNNLYpriKADDFDFSFG 574
Cdd:PRK11067  499 ADLS-DYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEnPSSDSDNSF---KTDDFTFNYG 574

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 575 WNYNSLNRGYFPTQGTVASLGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAG 654
Cdd:PRK11067  575 WTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAG 654

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 655 GIGSLRGFAYGAVGPKAIYY-------SAQNNAFTSASDDVVGGNAMATASLELITPTPFVSEKYQHNVRTSLFVDAASV 727
Cdd:PRK11067  655 GSSTVRGFQSNTIGPKAVYYpgqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTV 734

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2494689196 728 WNTKWKKSAY---PTLPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:PRK11067  735 WDTNWDNTAYtraAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 803
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
 16-793 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 924.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  16 AAAPFVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDI 95
Cdd:PRK11067   20 GAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  96 EGNSAIPKDPLQDNLKANLISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTTRAENGGVNVKLNITEGDVAYVKN 175
Cdd:PRK11067  100 SGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQ 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 176 IKFEGNQAFSSKELTKRLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYT 255
Cdd:PRK11067  180 INIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 256 LREGAQYNISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQIN 335
Cdd:PRK11067  260 ITEGDQYKLSGVQVSGNLAGHSAEIEKLTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLH 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 336 FVVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKI 415
Cdd:PRK11067  339 VNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKV 418

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 416 KERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSD 495
Cdd:PRK11067  419 KERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGVSLGGRIFYNDFEADD 498

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 496 NDTSaSYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNVEREFTREKYVKSMNF-PIVQGNNLYpriKADDFDFSFG 574
Cdd:PRK11067  499 ADLS-DYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEnPSSDSDNSF---KTDDFTFNYG 574

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 575 WNYNSLNRGYFPTQGTVASLGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAG 654
Cdd:PRK11067  575 WTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAG 654

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 655 GIGSLRGFAYGAVGPKAIYY-------SAQNNAFTSASDDVVGGNAMATASLELITPTPFVSEKYQHNVRTSLFVDAASV 727
Cdd:PRK11067  655 GSSTVRGFQSNTIGPKAVYYpgqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTV 734

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2494689196 728 WNTKWKKSAY---PTLPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:PRK11067  735 WDTNWDNTAYtraAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 20-793 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 877.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  20 FVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDIEGNS 99
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 100 AIPKDPLQDNLkaNLISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTTRAENGGVNVKLNITEGDVAYVKNIKFE 179
Cdd:TIGR03303  81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 180 GNQAFSSKELTKRLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYTLREG 259
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 260 AQYNISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQINFVVD 339
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLK-IKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVD 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 340 AGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVqNTDDQVDVVYKIKERN 419
Cdd:TIGR03303 318 PGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 420 TGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDTS 499
Cdd:TIGR03303 397 TGSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 500 AsYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNverefTREKYVKSMNFPIVQGNnlypriKADDFDFSFGWNYNS 579
Cdd:TIGR03303 477 D-YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD-----DSDSDSSASYFIKEQGG------KFIDSSLSYGWSYDT 544

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 580 LNRGYFPTQGTVASLGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAGGIGSL 659
Cdd:TIGR03303 545 LDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSV 624

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 660 RGFAYGAVGPKAIYYsaqnnaftsaSDDVVGGNAMATASLELITPTPFVseKYQHNVRTSLFVDAASVWNTKWKKsaypt 739
Cdd:TIGR03303 625 RGFESNGIGPRDIND----------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK----- 687

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2494689196 740 LPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:TIGR03303 688 EGDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
22-793 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 659.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  22 VKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDIEGNSAI 101
Cdd:COG4775     1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 102 PKDPLQDNLKanlISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTtraENGGVNVKLNITEGDVAYVKNIKFEGN 181
Cdd:COG4775    81 KDEDLKKELG---LKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 182 QAFSSKELTKRLDIQPDvSWWniFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYTLREGAQ 261
Cdd:COG4775   155 KAFSDKELRKVLKTKES-GWL--TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 262 YNISEIRIIGDTAKlDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQINFVVDAG 341
Cdd:COG4775   232 YKVGDIKFEGNLVD-EEELRKLLK-IKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEG 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 342 RRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKIKERNTG 421
Cdd:COG4775   310 PRVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTG 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 422 SINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDtsaS 501
Cdd:COG4775   390 SLSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS---S 466

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 502 YKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNVErefTREKYVKSMNFpivqgnnlypriKADDFDFSFGWNYNSLN 581
Cdd:COG4775   467 YDLKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVD---SSPDYLPDQNG------------SSNTSSLGLGLTYDTRD 531

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 582 RGYFPTQGTVASLGGKVTIP--GSDNKYYRLNADFRNYYPLNRehKWVISTKVGAAFTNGFgGKKVPFYQLYSAGGIGSL 659
Cdd:COG4775   532 NPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSL 608

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 660 RGFAYGAVGPKaiyysaqnnaftsasddvVGGNAMATASLELITPTPFVSEKyqhNVRTSLFVDAASVWNTkwkksaypt 739
Cdd:COG4775   609 RGYEENSLGPR------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS--------- 658

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2494689196 740 lPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:COG4775   659 -GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
 445-789 3.48e-107

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 330.86  E-value: 3.48e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 445 NFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNsDNDTSASYKRKTYGINGTLGFPVDENNSYY 524
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDS-DRDSSDSYRITTYGFSVSLGRPITENWSLS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 525 LGLGYTHDKLSNVEREFTREKYvksmnFPIVQGNNLYprikaDDFDFSFGWNYNSLNRGYFPTQGTVASLGGKVTI--PG 602
Cdd:pfam01103  80 LGLGYQHNKILDESGSPNIRNY-----YPSASGTGKS-----LTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLG 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 603 SDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAGGIGSLRGFAYGAVGPKAIyysaqnnaft 682
Cdd:pfam01103 150 GDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE---------- 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 683 saSDDVVGGNAMATASLELITPTPFVSEKyqhNVRTSLFVDAASVWNTKWKKSAYPTlpDYKDYKRVRASAGIAFQWQSP 762
Cdd:pfam01103 220 --DGDALGGNSYVVASLELRFPLPFVPKQ---SVRGVLFFDAGNVWNTGSTDPGSSR--GARSKAGIRASVGVGLRWLSP 292

                         330       340
                  ....*....|....*....|....*..
gi 2494689196 763 IGPLSFSYAKPIKKYSGDEIEQFQFSI 789
Cdd:pfam01103 293 LGPLRFDYAFPLKKPDGDETQRFQFGI 319
 
Name Accession Description Interval E-value
PRK11067 PRK11067
outer membrane protein assembly factor YaeT; Provisional
 16-793 0e+00

outer membrane protein assembly factor YaeT; Provisional


Pssm-ID: 236834 [Multi-domain]  Cd Length: 803  Bit Score: 924.84  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  16 AAAPFVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDI 95
Cdd:PRK11067   20 GAEGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  96 EGNSAIPKDPLQDNLKANLISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTTRAENGGVNVKLNITEGDVAYVKN 175
Cdd:PRK11067  100 SGNKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQ 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 176 IKFEGNQAFSSKELTKRLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYT 255
Cdd:PRK11067  180 INIVGNHAFSTDELISRFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVN 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 256 LREGAQYNISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQIN 335
Cdd:PRK11067  260 ITEGDQYKLSGVQVSGNLAGHSAEIEKLTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEINDADKTVKLH 338

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 336 FVVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKI 415
Cdd:PRK11067  339 VNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVEQGKERLNRLGFFETVDVDTQRVPGSPDQVDVVYKV 418

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 416 KERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSD 495
Cdd:PRK11067  419 KERNTGSFNFGVGYGTESGVSFQAGVQQDNWLGTGNSVGINGTKNDYQTYAELSVTDPYFTVDGVSLGGRIFYNDFEADD 498

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 496 NDTSaSYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNVEREFTREKYVKSMNF-PIVQGNNLYpriKADDFDFSFG 574
Cdd:PRK11067  499 ADLS-DYTNKSYGTDVTLGFPINENNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEnPSSDSDNSF---KTDDFTFNYG 574

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 575 WNYNSLNRGYFPTQGTVASLGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAG 654
Cdd:PRK11067  575 WTYNNLDRGYFPTAGNRVNLTGKVTIPGSDNEYYKVTLDTAQYVPLDDDHKWVLLGRGRLGYGDGLGGKEMPFYENFYAG 654

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 655 GIGSLRGFAYGAVGPKAIYY-------SAQNNAFTSASDDVVGGNAMATASLELITPTPFVSEKYQHNVRTSLFVDAASV 727
Cdd:PRK11067  655 GSSTVRGFQSNTIGPKAVYYpgqasnyTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTV 734

                         730       740       750       760       770       780
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2494689196 728 WNTKWKKSAY---PTLPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:PRK11067  735 WDTNWDNTAYtraAGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 803
OM_YaeT TIGR03303
outer membrane protein assembly complex, YaeT protein; Members of this protein family are the ...
 20-793 0e+00

outer membrane protein assembly complex, YaeT protein; Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274514 [Multi-domain]  Cd Length: 741  Bit Score: 877.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  20 FVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDIEGNS 99
Cdd:TIGR03303   1 FVVKDIRVEGLQRVSEGTVLNYLPVKVGDTISDEKIDEAIKALYATGYFEDVKIEREGGVLVIKVKERPIINSIVFSGNK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 100 AIPKDPLQDNLkaNLISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTTRAENGGVNVKLNITEGDVAYVKNIKFE 179
Cdd:TIGR03303  81 EIKKDQLKKAL--VGIKKGEIFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFV 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 180 GNQAFSSKELTKRLDIQPDVSWWNIFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYTLREG 259
Cdd:TIGR03303 159 GNKAFSDSELRDVFALKESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKGVYITYNIKEG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 260 AQYNISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQINFVVD 339
Cdd:TIGR03303 239 EQYKFGEVTIEGDLIGPDEELKKLLK-IKKGEVFNRSKVTKIVKAIKDLLGEKGYAFANVNPRPQINDENKTVDLTFKVD 317

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 340 AGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVqNTDDQVDVVYKIKERN 419
Cdd:TIGR03303 318 PGKRVYVRRINISGNTRTRDEVIRRELRQLEGDWYSLSKIKRSKRRLERLGYFETVNIETVPV-GSPDQVDLNVKVKEQP 396

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 420 TGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDTS 499
Cdd:TIGR03303 397 TGSISFGVGYGSSSGLSFNASISERNFLGTGNRLSLSANKSSLSTSYSLSFTDPYFTDDGVSLGFSIFYSETDRNYKNFS 476

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 500 AsYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNverefTREKYVKSMNFPIVQGNnlypriKADDFDFSFGWNYNS 579
Cdd:TIGR03303 477 D-YKTKTYGGSINLGYPITEYLRVSLGYGYEQNKIKD-----DSDSDSSASYFIKEQGG------KFIDSSLSYGWSYDT 544

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 580 LNRGYFPTQGTVASLGGKVTIPGSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAGGIGSL 659
Cdd:TIGR03303 545 LDSGYFPTKGSIQRLSQEFAGPGGDLKYYKLTYDSEYYIPLSKEDDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSV 624

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 660 RGFAYGAVGPKAIYYsaqnnaftsaSDDVVGGNAMATASLELITPTPFVseKYQHNVRTSLFVDAASVWNTKWKKsaypt 739
Cdd:TIGR03303 625 RGFESNGIGPRDIND----------SGDSIGGNAMATANVELIFPLPFL--PEDNGLRGSVFFDAGNVWGTDQKK----- 687

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2494689196 740 LPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:TIGR03303 688 EGDYSDDSSLRASVGVGLRWISPMGPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741
BamA COG4775
Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];
22-793 0e+00

Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443807 [Multi-domain]  Cd Length: 711  Bit Score: 659.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  22 VKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVANVVRQLFVQNRFEDVRATREGNTLVIKVAERPLINSVDIEGNSAI 101
Cdd:COG4775     1 IKDIRVEGLQRVEAGTVLSYLPLRVGDTFDDEKLDEAIKALYATGLFSDVRIEREGVVLVVKVKERPTINSIEFEGNKKI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 102 PKDPLQDNLKanlISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTTTtraENGGVNVKLNITEGDVAYVKNIKFEGN 181
Cdd:COG4775    81 KDEDLKKELG---LKEGRVFDRALLERAEQELKEQYRSKGYYNAKVTITP---ERNRVDLTFEIDEGEKAKIKKINFVGN 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 182 QAFSSKELTKRLDIQPDvSWWniFESSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTAVNFNDKKTEVDLVYTLREGAQ 261
Cdd:COG4775   155 KAFSDKELRKVLKTKES-GWL--TKSDKYSKEKLEADLERLRSFYLNRGYLDARVDSTQVELSPDKKDIYITINIEEGEQ 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 262 YNISEIRIIGDTAKlDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQINFVVDAG 341
Cdd:COG4775   232 YKVGDIKFEGNLVD-EEELRKLLK-IKPGDVYNREKLEKDIEAITDLYGDNGYAFARVEPVPEIDPENDTVDLTFRIDEG 309

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 342 RRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKIKERNTG 421
Cdd:COG4775   310 PRVYVDRIEIEGNTRTRDEVIRRELRLKEGDPFSREKLERSRRRLYRLGYFESVDVETEPGPSTPDQVDLVVDVKEKPTG 389

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 422 SINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDtsaS 501
Cdd:COG4775   390 SLSLGAGYSSDDGFIGGASLSQRNLLGTGQELSLSLQLGSYSQSYSLSFTEPYFFGSPLSLGVSLFYRRRDASDYS---S 466

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 502 YKRKTYGINGTLGFPVDENNSYYLGLGYTHDKLSNVErefTREKYVKSMNFpivqgnnlypriKADDFDFSFGWNYNSLN 581
Cdd:COG4775   467 YDLKRTGGGLGLGYPLSEDLRLSLGYGYERTDISDVD---SSPDYLPDQNG------------SSNTSSLGLGLTYDTRD 531

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 582 RGYFPTQGTVASLGGKVTIP--GSDNKYYRLNADFRNYYPLNRehKWVISTKVGAAFTNGFgGKKVPFYQLYSAGGIGSL 659
Cdd:COG4775   532 NPLFPTRGSYLSLSLEFAGPylGGDLEYYKLSADARYYFPLGK--KLVLALRAEAGYLGGY-GKDLPFFERFYLGGFGSL 608

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 660 RGFAYGAVGPKaiyysaqnnaftsasddvVGGNAMATASLELITPTPFVSEKyqhNVRTSLFVDAASVWNTkwkksaypt 739
Cdd:COG4775   609 RGYEENSLGPR------------------LGGNAYLLGSAELRFPLPLPPSA---GLRGALFVDAGNVWDS--------- 658

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2494689196 740 lPDYKDYKRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIEQFQFSIGSSF 793
Cdd:COG4775   659 -GDDFDLSDLRYSAGVGLRWDTPLGPLRLDYAYPLDKEPGDSGQRFHFSIGTRF 711
Omp85 pfam01103
Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane ...
 445-789 3.48e-107

Omp85 superfamily domain; The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.


Pssm-ID: 460065 [Multi-domain]  Cd Length: 319  Bit Score: 330.86  E-value: 3.48e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 445 NFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNsDNDTSASYKRKTYGINGTLGFPVDENNSYY 524
Cdd:pfam01103   1 NLLGRGQSLSVNASRGSYETSFSLSFTDPYFLGDGVSLGGSLFYNSYDS-DRDSSDSYRITTYGFSVSLGRPITENWSLS 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 525 LGLGYTHDKLSNVEREFTREKYvksmnFPIVQGNNLYprikaDDFDFSFGWNYNSLNRGYFPTQGTVASLGGKVTI--PG 602
Cdd:pfam01103  80 LGLGYQHNKILDESGSPNIRNY-----YPSASGTGKS-----LTFSLSYGWTYDTRDDGLFPTRGSYLKFNLEFTGpfLG 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 603 SDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFGGKKVPFYQLYSAGGIGSLRGFAYGAVGPKAIyysaqnnaft 682
Cdd:pfam01103 150 GDVSYYKLTADGSYYYPLGKDDSFVLSARVALGYLDGYGTKDLPFYERFYAGGSNSVRGFEYGGIGPRDE---------- 219

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 683 saSDDVVGGNAMATASLELITPTPFVSEKyqhNVRTSLFVDAASVWNTKWKKSAYPTlpDYKDYKRVRASAGIAFQWQSP 762
Cdd:pfam01103 220 --DGDALGGNSYVVASLELRFPLPFVPKQ---SVRGVLFFDAGNVWNTGSTDPGSSR--GARSKAGIRASVGVGLRWLSP 292

                         330       340
                  ....*....|....*....|....*..
gi 2494689196 763 IGPLSFSYAKPIKKYSGDEIEQFQFSI 789
Cdd:pfam01103 293 LGPLRFDYAFPLKKPDGDETQRFQFGI 319
TamA COG0729
Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; ...
 241-793 8.00e-68

Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440493 [Multi-domain]  Cd Length: 574  Bit Score: 234.79  E-value: 8.00e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 241 VNFNDKKTEVDLVYTLREGAQYNISEIRIIGDT-AKLDNELNALLKDFT--PGQLFRKSELATIEEGIKQVLGDHGYGSA 317
Cdd:COG0729    80 IRLDGRDGPWTVTITVDPGPPVRIGKVDIELLGeAAQDPARRKLLAAWPlkPGDPLRHGAYEAAKSALLDALRERGYPDA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 318 KVDL-YPKFNEQDHTVQINFVVDAGRRIYVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGFYETVD 396
Cdd:COG0729   160 RFTQsRAEVDPATNTADVTLTVDSGPRYRFGEITVEGLSRVPEDFLRRLAPFKPGEPYSPDKLLELQQRLQSTGYFSSVR 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 397 MTMPNVQNTDDQVDVVYKIKERNTGSINFGIGYGTESGISYQAGIKQDNFLGMGSTVSLSGTRNDYGTSVNLGYTEPYFT 476
Cdd:COG0729   240 VTPDEDPAPDGTVPVTVTLTERKRRRIGFGLGYSTDTGPRLSAGWEHRNLFGRGHRLRLELELSQPEQSLSADYRIPPLF 319

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 477 KDG--VSLGGNIFYEDYDnsdndtsaSYKRKTYGINGTLGFPVDENNSYYLGLGYTHDKL--SNVEREFTRekyvksmnf 552
Cdd:COG0729   320 PLGqyLSLGAGLEREDTD--------DYDSRSLTLGAGRTRRLSDGWTRSLGLRLLYERFtdGDDDRTYTL--------- 382

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 553 pivqgnnLYPrikaddfdfSFGWNYNSLNRGYFPTQGTVASLGGKVTIP--GSDNKYYRLNADFRNYYPLNREHKWVIST 630
Cdd:COG0729   383 -------LSP---------GLSWTRDRRDDPLDPTRGYRLSLELGPGSKllGSDTSFLRLYARGSWYRPLGERHRLAGRA 446

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 631 KVGAAFTNGFGgkKVPFYQLYSAGGIGSLRGFAYGAVGPKAiyysaqnnaftsASDDVVGGNAMATASLElitptpfvse 710
Cdd:COG0729   447 ELGAILGADFD--DVPPSLRFFAGGDGSVRGYGYQSLGPRD------------GDGDVIGGRSLAVGSLE---------- 502

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 711 kYQHNVRTS----LFVDAASVWNtkwkksayptlpDYKDYkRVRASAGIAFQWQSPIGPLSFSYAKPIKKYSGDEIeQFQ 786
Cdd:COG0729   503 -YRYRVTENwglaVFVDAGNAFN------------DFPFS-DLKVGAGLGLRWYSPVGPIRLDLAYPLNDRDDSSF-RLY 567


                  ....*..
gi 2494689196 787 FSIGSSF 793
Cdd:COG0729   568 ISLGQAF 574
FhaC COG2831
Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular ...
 258-793 5.11e-24

Hemolysin activation/secretion protein [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442079 [Multi-domain]  Cd Length: 547  Bit Score: 106.96  E-value: 5.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 258 EGAQYNISEIRIIGDTAKLDNELNALLKDFTpGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLyPKFNEQDHTVQInfV 337
Cdd:COG2831    60 EGPCFTIKRIRVEGNTVLPEEELQALLAPYL-GRCLTLADLNALADAITNLYRDRGYITSRAYL-PPQDLSDGVLRI--Q 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 338 VDAGRriyVRKIRFEGNDVTADSTLRREMRQQEGAWLSTSAVALGKSRLERTGfYETVDMTM-PNVQntDDQVDVVYKIK 416
Cdd:COG2831   136 VVEGR---VGRIRVEGNSRLSRAYLRSALPLAEGKPLNLRDLEQGLLLLNRLP-GVQVTAELrPGTE--PGTSDLVVTVE 209

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 417 ERNTGSINFGI-GYGTESGISYQAGI--KQDNFLGMGSTVSLSGTR---NDYGTSVNLGYTEPYFTkDGVSLGGNIFYED 490
Cdd:COG2831   210 EAKPFRGSLGLdNSGSPSTGRYRLGAslSLDNLLGLGDQLSLSYSRsldGDGSRSYSLSYSVPLGY-WGLTLGLSYSRYR 288

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 491 YDNSDNDTSASYKRKTYGINGTLGFPV--DENNSYYLGLGYTH----DKLSNVEREFTREKYVksmNFPIVQgnnlypri 564
Cdd:COG2831   289 SRVGGPFGTLDISGKSQTYGLRLSYPLirSRDQKLSLSLGLDYkdsrNYLLGTEIEVQRRRLS---VLRLGL-------- 357

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 565 kadDFDFSFGWNYNSLNRGYfpTQGTvASLGGKVTIP---GSDNKYYRLNADFRNYYPLNREHKWVISTKVGAAFTNGFG 641
Cdd:COG2831   358 ---SYTRRLGGGVLSLSLSF--SQGL-DWLGATPAPDasrGPDGRFTKLRLSASRVQPLPQDFSLLLRLDGQYSSDPLLS 431

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 642 GKKvpfyqlYSAGGIGSLRGFaygavgpkaiyysaqnnaftsaSDDVVGGNAMATASLELITPTPfvSEKYQHNVRTSLF 721
Cdd:COG2831   432 SEQ------FSLGGRYSVRGY----------------------DEGELSGDNGWYLSNELRWPLP--RLSLLGGLQLYAF 481

                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2494689196 722 VDAASVWNTKwkksaypTLPDYKDYKRVrASAGIAFQWQspIGP---LSFSYAKPIKKYSGD-EIEQFQFSIGSSF 793
Cdd:COG2831   482 LDAGRVWNNS-------ALPGQLNGRTL-AGAGLGLRLS--LGKnlsLDLDYARPLGDPDGDtDNRRLYFSLSYSF 547
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 172-259 4.06e-12

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 62.36  E-value: 4.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 172 YVKNIKFEGNQAFSSKELTKRLDIQPdvswwnifeSSKFEQQAYNKDLETLRDFYMDRGYAQFALQDTaVNFNDKKTEVD 251
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKE---------GDVYNREKLEEDKEALKDRYGRLGYFDASVSTN-VEIDDEVNTVD 70


                  ....*...
gi 2494689196 252 LVYTLREG 259
Cdd:pfam07244  71 LTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 90-168 9.15e-11

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 58.51  E-value: 9.15e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  90 INSVDIEGNSAIPKDPLQDNLKanlISKGEVFDAAKLEGFKQGLLEHYHSIGRYEAKIDTT-TTRAENGGVNVKLNITEG 168
Cdd:pfam07244   2 IGDINFEGNKKTKDEELRRLLG---LKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNvEIDDEVNTVDLTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 345-418 1.01e-10

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 58.51  E-value: 1.01e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2494689196 345 YVRKIRFEGNDVTADSTLRREMRQQEGAWLS----TSAVALGKSRLERTGFYETVDMTMPNVQNTDDQVDVVYKIKER 418
Cdd:pfam07244   1 KIGDINFEGNKKTKDEELRRLLGLKEGDVYNreklEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
POTRA pfam07244
Surface antigen variable number repeat; This family is found primarily in bacterial surface ...
 264-341 8.40e-10

Surface antigen variable number repeat; This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by pfam01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.


Pssm-ID: 462121 [Multi-domain]  Cd Length: 78  Bit Score: 55.81  E-value: 8.40e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2494689196 264 ISEIRIIGDTAKLDNELNALLKdFTPGQLFRKSELATIEEGIKQVLGDHGYGSAKVDLYPKFNEQDHTVQINFVVDAG 341
Cdd:pfam07244   2 IGDINFEGNKKTKDEELRRLLG-LKEGDVYNREKLEEDKEALKDRYGRLGYFDASVSTNVEIDDEVNTVDLTFNVDEG 78
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 443-628 1.01e-05

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 49.08  E-value: 1.01e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 443 QDNFLGMGSTVSLSGTRNDYGTSVNLGytepyFTKDGVSLGGNIFYED----YDNSDNDTSASYKRKTYGINGTLGFPVD 518
Cdd:COG4771   157 TDELEGSVSLGYGSNGNGTYSGSLSLG-----GPGDKLSFLLSGSYRDrdgyLDYRNGGFVGNSGYERYNLNAKLGYRLS 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196 519 ENNSYYLGLGYTHDKLSNVEREFTREKYVKSMNFPIVQGNNL------YPRIKADDFDFSFGWNYNSLNRGYFPTQGTva 592
Cdd:COG4771   232 DNHRLSLSGGYSRQDRDGGPPTLGDTEISSDNAGDRDTTTDRgnyslrYNGDLGDNLDLSLYYSRTDRDSTNGSLGGS-- 309

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2494689196 593 slggkvTIPGSDNKYYRLNADFRNYYPLNREHKWVI 628
Cdd:COG4771   310 ------TGSFSDSDDTTYGLELDLTYPLGGNHTLTL 339
FtsQ COG1589
Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning]; ...
 20-87 1.56e-03

Cell division septal protein FtsQ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441197 [Multi-domain]  Cd Length: 241  Bit Score: 41.17  E-value: 1.56e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2494689196  20 FVVKDIRVDGVQPETGQAIISSLPVKVGQTATDNDVaNVVRQLFVQNRF-EDVRATRE-GNTLVIKVAER 87
Cdd:COG1589    40 FPVREVEVEGNSHVSAEEIRAALGILLGGNLFTLDL-DAIRERLEALPWvKSASVRRRwPDTLVIEVTER 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH