deaminase [Archaeoglobus profundus]
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
12-86 | 4.37e-42 | |||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; : Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 148.45 E-value: 4.37e-42
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ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
502-578 | 1.59e-40 | |||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; : Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 144.21 E-value: 1.59e-40
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Hop super family | cl34242 | Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, ... |
256-502 | 1.50e-24 | |||||
Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, transposons]; The actual alignment was detected with superfamily member COG1372: Pssm-ID: 440983 [Multi-domain] Cd Length: 866 Bit Score: 108.83 E-value: 1.50e-24
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Hint | cd00081 | Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins ... |
84-232 | 2.46e-10 | |||||
Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here. : Pssm-ID: 238035 [Multi-domain] Cd Length: 136 Bit Score: 58.82 E-value: 2.46e-10
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Name | Accession | Description | Interval | E-value | |||||||
ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
12-86 | 4.37e-42 | |||||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 148.45 E-value: 4.37e-42
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ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
502-578 | 1.59e-40 | |||||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 144.21 E-value: 1.59e-40
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deoxycytidylate_deaminase | cd01286 | Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP ... |
500-565 | 4.88e-31 | |||||||
Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Pssm-ID: 238613 [Multi-domain] Cd Length: 131 Bit Score: 117.38 E-value: 4.88e-31
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deoxycytidylate_deaminase | cd01286 | Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP ... |
17-86 | 4.30e-29 | |||||||
Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Pssm-ID: 238613 [Multi-domain] Cd Length: 131 Bit Score: 111.98 E-value: 4.30e-29
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Hop | COG1372 | Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, ... |
256-502 | 1.50e-24 | |||||||
Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, transposons]; Pssm-ID: 440983 [Multi-domain] Cd Length: 866 Bit Score: 108.83 E-value: 1.50e-24
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cd | PHA02588 | deoxycytidylate deaminase; Provisional |
501-579 | 1.61e-22 | |||||||
deoxycytidylate deaminase; Provisional Pssm-ID: 222894 [Multi-domain] Cd Length: 168 Bit Score: 94.44 E-value: 1.61e-22
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dCMP_cyt_deam_1 | pfam00383 | Cytidine and deoxycytidylate deaminase zinc-binding region; |
503-552 | 1.07e-18 | |||||||
Cytidine and deoxycytidylate deaminase zinc-binding region; Pssm-ID: 395307 [Multi-domain] Cd Length: 100 Bit Score: 81.19 E-value: 1.07e-18
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ComEB | TIGR02571 | ComE operon protein 2; This protein is found in the ComE operon for "late competence" as ... |
13-69 | 1.57e-18 | |||||||
ComE operon protein 2; This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. Pssm-ID: 131622 [Multi-domain] Cd Length: 151 Bit Score: 82.60 E-value: 1.57e-18
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antiphage_deaminase | NF041025 | anti-phage dCTP deaminase; It has been shown that proteins of this family prevented bacteria ... |
445-567 | 5.59e-15 | |||||||
anti-phage dCTP deaminase; It has been shown that proteins of this family prevented bacteria from phage infections by depleting deoxycytidine triphosphate (dCTP), which are important for the replication of viruses. The anti-phage dCTP deaminases have an N-terminal kinase and a C-terminal dCTP deaminase domains, however, the housekeeping dCTP deaminases usually do not have the N-terminal kinase. Pssm-ID: 468954 [Multi-domain] Cd Length: 435 Bit Score: 77.21 E-value: 5.59e-15
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cd | PHA02588 | deoxycytidylate deaminase; Provisional |
20-65 | 9.12e-13 | |||||||
deoxycytidylate deaminase; Provisional Pssm-ID: 222894 [Multi-domain] Cd Length: 168 Bit Score: 66.70 E-value: 9.12e-13
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dCMP_cyt_deam_1 | pfam00383 | Cytidine and deoxycytidylate deaminase zinc-binding region; |
16-84 | 6.58e-11 | |||||||
Cytidine and deoxycytidylate deaminase zinc-binding region; Pssm-ID: 395307 [Multi-domain] Cd Length: 100 Bit Score: 59.24 E-value: 6.58e-11
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Hint | cd00081 | Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins ... |
84-232 | 2.46e-10 | |||||||
Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here. Pssm-ID: 238035 [Multi-domain] Cd Length: 136 Bit Score: 58.82 E-value: 2.46e-10
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PRK08332 | PRK08332 | vitamin B12-dependent ribonucleotide reductase; |
290-502 | 4.12e-10 | |||||||
vitamin B12-dependent ribonucleotide reductase; Pssm-ID: 181392 [Multi-domain] Cd Length: 1740 Bit Score: 62.86 E-value: 4.12e-10
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eubact_ribD | TIGR00326 | riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in ... |
506-571 | 4.54e-09 | |||||||
riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD] Pssm-ID: 273015 [Multi-domain] Cd Length: 344 Bit Score: 58.30 E-value: 4.54e-09
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HintN | smart00306 | Hint (Hedgehog/Intein) domain N-terminal region; Hedgehog/Intein domain, N-terminal region. ... |
83-152 | 2.87e-08 | |||||||
Hint (Hedgehog/Intein) domain N-terminal region; Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases. Pssm-ID: 197642 [Multi-domain] Cd Length: 100 Bit Score: 51.50 E-value: 2.87e-08
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Intein_splicing | pfam14890 | Intein splicing domain; Inteins are segments of protein which excise themselves from a ... |
118-501 | 1.57e-07 | |||||||
Intein splicing domain; Inteins are segments of protein which excise themselves from a precursor protein and mediate the rejoining of the remainder of the precursor (the extein). Most inteins consist of a splicing domain which is split into two segments by a homing endonuclease domain. This domain represents the splicing domain. Pssm-ID: 434290 [Multi-domain] Cd Length: 378 Bit Score: 53.62 E-value: 1.57e-07
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Hint_2 | pfam13403 | Hint domain; This domain is found in inteins. |
84-146 | 1.76e-06 | |||||||
Hint domain; This domain is found in inteins. Pssm-ID: 433179 [Multi-domain] Cd Length: 147 Bit Score: 48.01 E-value: 1.76e-06
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intein_Cterm | TIGR01443 | intein C-terminal splicing region; This model represents the well-conserved C-terminal region ... |
480-500 | 3.21e-03 | |||||||
intein C-terminal splicing region; This model represents the well-conserved C-terminal region of a large number of inteins. It is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. Inteins are regions encoded within proteins from which they remove themselves after translation in a self-splicing reaction, leaving the remainder of the coding region to form a complete, functional protein as if the intein were never there. Proteins with inteins include RecA, GyrA, ribonucleotide reductase, and others. Most inteins have a central region with putative endonuclease activity. Pssm-ID: 213622 [Multi-domain] Cd Length: 21 Bit Score: 35.09 E-value: 3.21e-03
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HintC | smart00305 | Hint (Hedgehog/Intein) domain C-terminal region; Hedgehog/Intein domain, C-terminal region. ... |
480-507 | 5.35e-03 | |||||||
Hint (Hedgehog/Intein) domain C-terminal region; Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases. Pssm-ID: 197641 Cd Length: 46 Bit Score: 35.23 E-value: 5.35e-03
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Name | Accession | Description | Interval | E-value | |||||||
ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
12-86 | 4.37e-42 | |||||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 148.45 E-value: 4.37e-42
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ComEB | COG2131 | Deoxycytidylate deaminase [Nucleotide transport and metabolism]; |
502-578 | 1.59e-40 | |||||||
Deoxycytidylate deaminase [Nucleotide transport and metabolism]; Pssm-ID: 441734 [Multi-domain] Cd Length: 154 Bit Score: 144.21 E-value: 1.59e-40
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deoxycytidylate_deaminase | cd01286 | Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP ... |
500-565 | 4.88e-31 | |||||||
Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Pssm-ID: 238613 [Multi-domain] Cd Length: 131 Bit Score: 117.38 E-value: 4.88e-31
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deoxycytidylate_deaminase | cd01286 | Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP ... |
17-86 | 4.30e-29 | |||||||
Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Pssm-ID: 238613 [Multi-domain] Cd Length: 131 Bit Score: 111.98 E-value: 4.30e-29
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Hop | COG1372 | Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, ... |
256-502 | 1.50e-24 | |||||||
Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, transposons]; Pssm-ID: 440983 [Multi-domain] Cd Length: 866 Bit Score: 108.83 E-value: 1.50e-24
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cd | PHA02588 | deoxycytidylate deaminase; Provisional |
501-579 | 1.61e-22 | |||||||
deoxycytidylate deaminase; Provisional Pssm-ID: 222894 [Multi-domain] Cd Length: 168 Bit Score: 94.44 E-value: 1.61e-22
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dCMP_cyt_deam_1 | pfam00383 | Cytidine and deoxycytidylate deaminase zinc-binding region; |
503-552 | 1.07e-18 | |||||||
Cytidine and deoxycytidylate deaminase zinc-binding region; Pssm-ID: 395307 [Multi-domain] Cd Length: 100 Bit Score: 81.19 E-value: 1.07e-18
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ComEB | TIGR02571 | ComE operon protein 2; This protein is found in the ComE operon for "late competence" as ... |
13-69 | 1.57e-18 | |||||||
ComE operon protein 2; This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. Pssm-ID: 131622 [Multi-domain] Cd Length: 151 Bit Score: 82.60 E-value: 1.57e-18
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antiphage_deaminase | NF041025 | anti-phage dCTP deaminase; It has been shown that proteins of this family prevented bacteria ... |
445-567 | 5.59e-15 | |||||||
anti-phage dCTP deaminase; It has been shown that proteins of this family prevented bacteria from phage infections by depleting deoxycytidine triphosphate (dCTP), which are important for the replication of viruses. The anti-phage dCTP deaminases have an N-terminal kinase and a C-terminal dCTP deaminase domains, however, the housekeeping dCTP deaminases usually do not have the N-terminal kinase. Pssm-ID: 468954 [Multi-domain] Cd Length: 435 Bit Score: 77.21 E-value: 5.59e-15
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cd | PHA02588 | deoxycytidylate deaminase; Provisional |
20-65 | 9.12e-13 | |||||||
deoxycytidylate deaminase; Provisional Pssm-ID: 222894 [Multi-domain] Cd Length: 168 Bit Score: 66.70 E-value: 9.12e-13
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MafB19-deam | pfam14437 | MafB19-like deaminase; A member of the nucleic acid/nucleotide deaminase superfamily ... |
506-557 | 5.02e-12 | |||||||
MafB19-like deaminase; A member of the nucleic acid/nucleotide deaminase superfamily prototyped by Neisseria MafB19. Members of this family are present in a wide phyletic range of bacteria and are predicted to function as toxins in bacterial polymorphic toxin systems. Pssm-ID: 433953 [Multi-domain] Cd Length: 144 Bit Score: 63.70 E-value: 5.02e-12
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RibD1 | COG0117 | Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain [Coenzyme transport and ... |
506-572 | 5.14e-12 | |||||||
Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain [Coenzyme transport and metabolism]; Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain is part of the Pathway/BioSystem: Riboflavin/FAD biosynthesis Pssm-ID: 439887 [Multi-domain] Cd Length: 311 Bit Score: 67.01 E-value: 5.14e-12
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dCMP_cyt_deam_1 | pfam00383 | Cytidine and deoxycytidylate deaminase zinc-binding region; |
16-84 | 6.58e-11 | |||||||
Cytidine and deoxycytidylate deaminase zinc-binding region; Pssm-ID: 395307 [Multi-domain] Cd Length: 100 Bit Score: 59.24 E-value: 6.58e-11
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Riboflavin_deaminase-reductase | cd01284 | Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD ... |
506-568 | 1.82e-10 | |||||||
Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain. Pssm-ID: 238611 [Multi-domain] Cd Length: 115 Bit Score: 58.40 E-value: 1.82e-10
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Hint | cd00081 | Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins ... |
84-232 | 2.46e-10 | |||||||
Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here. Pssm-ID: 238035 [Multi-domain] Cd Length: 136 Bit Score: 58.82 E-value: 2.46e-10
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PRK08332 | PRK08332 | vitamin B12-dependent ribonucleotide reductase; |
290-502 | 4.12e-10 | |||||||
vitamin B12-dependent ribonucleotide reductase; Pssm-ID: 181392 [Multi-domain] Cd Length: 1740 Bit Score: 62.86 E-value: 4.12e-10
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PRK14715 | PRK14715 | DNA-directed DNA polymerase II large subunit; |
297-492 | 9.01e-10 | |||||||
DNA-directed DNA polymerase II large subunit; Pssm-ID: 237799 [Multi-domain] Cd Length: 1627 Bit Score: 61.78 E-value: 9.01e-10
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eubact_ribD | TIGR00326 | riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in ... |
506-571 | 4.54e-09 | |||||||
riboflavin biosynthesis protein RibD; This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD] Pssm-ID: 273015 [Multi-domain] Cd Length: 344 Bit Score: 58.30 E-value: 4.54e-09
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nucleoside_deaminase | cd01285 | Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn ... |
500-552 | 8.38e-09 | |||||||
Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Pssm-ID: 238612 [Multi-domain] Cd Length: 109 Bit Score: 53.39 E-value: 8.38e-09
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TadA | COG0590 | tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA ... |
506-560 | 1.31e-08 | |||||||
tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA(Arg) A34 adenosine deaminase TadA is part of the Pathway/BioSystem: Pyrimidine salvagetRNA modification Pssm-ID: 440355 [Multi-domain] Cd Length: 148 Bit Score: 53.97 E-value: 1.31e-08
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HintN | smart00306 | Hint (Hedgehog/Intein) domain N-terminal region; Hedgehog/Intein domain, N-terminal region. ... |
83-152 | 2.87e-08 | |||||||
Hint (Hedgehog/Intein) domain N-terminal region; Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases. Pssm-ID: 197642 [Multi-domain] Cd Length: 100 Bit Score: 51.50 E-value: 2.87e-08
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Intein_splicing | pfam14890 | Intein splicing domain; Inteins are segments of protein which excise themselves from a ... |
118-501 | 1.57e-07 | |||||||
Intein splicing domain; Inteins are segments of protein which excise themselves from a precursor protein and mediate the rejoining of the remainder of the precursor (the extein). Most inteins consist of a splicing domain which is split into two segments by a homing endonuclease domain. This domain represents the splicing domain. Pssm-ID: 434290 [Multi-domain] Cd Length: 378 Bit Score: 53.62 E-value: 1.57e-07
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Hint_2 | pfam13403 | Hint domain; This domain is found in inteins. |
84-146 | 1.76e-06 | |||||||
Hint domain; This domain is found in inteins. Pssm-ID: 433179 [Multi-domain] Cd Length: 147 Bit Score: 48.01 E-value: 1.76e-06
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cytidine_deaminase-like | cd00786 | Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine ... |
505-550 | 1.96e-06 | |||||||
Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Pssm-ID: 238406 [Multi-domain] Cd Length: 96 Bit Score: 46.39 E-value: 1.96e-06
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TadA | COG0590 | tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA ... |
17-54 | 1.02e-04 | |||||||
tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]; tRNA(Arg) A34 adenosine deaminase TadA is part of the Pathway/BioSystem: Pyrimidine salvagetRNA modification Pssm-ID: 440355 [Multi-domain] Cd Length: 148 Bit Score: 42.80 E-value: 1.02e-04
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PRK14898 | PRK14898 | DNA-directed RNA polymerase subunit A''; Provisional |
281-441 | 2.09e-04 | |||||||
DNA-directed RNA polymerase subunit A''; Provisional Pssm-ID: 237854 [Multi-domain] Cd Length: 858 Bit Score: 44.50 E-value: 2.09e-04
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ribD | PRK10786 | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6- ... |
489-571 | 2.89e-03 | |||||||
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD; Pssm-ID: 182729 [Multi-domain] Cd Length: 367 Bit Score: 40.13 E-value: 2.89e-03
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intein_Cterm | TIGR01443 | intein C-terminal splicing region; This model represents the well-conserved C-terminal region ... |
480-500 | 3.21e-03 | |||||||
intein C-terminal splicing region; This model represents the well-conserved C-terminal region of a large number of inteins. It is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. Inteins are regions encoded within proteins from which they remove themselves after translation in a self-splicing reaction, leaving the remainder of the coding region to form a complete, functional protein as if the intein were never there. Proteins with inteins include RecA, GyrA, ribonucleotide reductase, and others. Most inteins have a central region with putative endonuclease activity. Pssm-ID: 213622 [Multi-domain] Cd Length: 21 Bit Score: 35.09 E-value: 3.21e-03
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PRK14698 | PRK14698 | V-type ATP synthase subunit A; Provisional |
290-483 | 3.50e-03 | |||||||
V-type ATP synthase subunit A; Provisional Pssm-ID: 184795 [Multi-domain] Cd Length: 1017 Bit Score: 40.39 E-value: 3.50e-03
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HintC | smart00305 | Hint (Hedgehog/Intein) domain C-terminal region; Hedgehog/Intein domain, C-terminal region. ... |
480-507 | 5.35e-03 | |||||||
Hint (Hedgehog/Intein) domain C-terminal region; Hedgehog/Intein domain, C-terminal region. Domain has been split to accommodate large insertions of endonucleases. Pssm-ID: 197641 Cd Length: 46 Bit Score: 35.23 E-value: 5.35e-03
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Blast search parameters | ||||
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