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Conserved domains on  [gi|2500428429|ref|WP_281279985|]
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amino acid permease, partial [Colwellia ponticola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AnsP super family cl43333
L-asparagine transporter or related permease [Amino acid transport and metabolism];
1-142 9.52e-67

L-asparagine transporter or related permease [Amino acid transport and metabolism];


The actual alignment was detected with superfamily member COG1113:

Pssm-ID: 440730 [Multi-domain]  Cd Length: 458  Bit Score: 208.82  E-value: 9.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFG-NDGVALGISNLWAHGG 79
Cdd:COG1113   120 LQFWFPDVPQWVWALVFLVLLTAINLLSVKLFGEFEFWFALIKVVAIVAFIVVGLLLIFFGFGlPGGPPAGLSNLWDHGG 199

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500428429  80 FLPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:COG1113   200 FFPNGIGGVLAALQIVVFAFGGIELVGIAAAEAKDPEKTIPKAINSVIWRILLFYVGSLFVIL 262
 
Name Accession Description Interval E-value
AnsP COG1113
L-asparagine transporter or related permease [Amino acid transport and metabolism];
1-142 9.52e-67

L-asparagine transporter or related permease [Amino acid transport and metabolism];


Pssm-ID: 440730 [Multi-domain]  Cd Length: 458  Bit Score: 208.82  E-value: 9.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFG-NDGVALGISNLWAHGG 79
Cdd:COG1113   120 LQFWFPDVPQWVWALVFLVLLTAINLLSVKLFGEFEFWFALIKVVAIVAFIVVGLLLIFFGFGlPGGPPAGLSNLWDHGG 199

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500428429  80 FLPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:COG1113   200 FFPNGIGGVLAALQIVVFAFGGIELVGIAAAEAKDPEKTIPKAINSVIWRILLFYVGSLFVIL 262
proY PRK10580
putative proline-specific permease; Provisional
 1-142 6.73e-54

putative proline-specific permease; Provisional


Pssm-ID: 182566 [Multi-domain]  Cd Length: 457  Bit Score: 175.78  E-value: 6.73e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWAHGGF 80
Cdd:PRK10580  114 MGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGF 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10580  194 FSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIM 255
GABAperm TIGR01773
gamma-aminobutyrate permease; GABA permease (gabP) catalyzes the translocation of ...
 4-142 6.17e-36

gamma-aminobutyrate permease; GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273797  Cd Length: 452  Bit Score: 128.06  E-value: 6.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIaFGFGNDGVALGISNLWAHGGFLPN 83
Cdd:TIGR01773 120 WFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAI-FGFAPGSEVSGFSNLTGKGGFFPN 198

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2500428429  84 GVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:TIGR01773 199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVV 257
AA_permease pfam00324
Amino acid permease;
5-141 2.15e-24

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 97.01  E-value: 2.15e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   5 FPDVPR-WIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGValGISNLWAHGG---F 80
Cdd:pfam00324 107 VPDIPYlWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA--IFRYLGDNGGknnF 184

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:pfam00324 185 PPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAI 245
 
Name Accession Description Interval E-value
AnsP COG1113
L-asparagine transporter or related permease [Amino acid transport and metabolism];
1-142 9.52e-67

L-asparagine transporter or related permease [Amino acid transport and metabolism];


Pssm-ID: 440730 [Multi-domain]  Cd Length: 458  Bit Score: 208.82  E-value: 9.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFG-NDGVALGISNLWAHGG 79
Cdd:COG1113   120 LQFWFPDVPQWVWALVFLVLLTAINLLSVKLFGEFEFWFALIKVVAIVAFIVVGLLLIFFGFGlPGGPPAGLSNLWDHGG 199

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500428429  80 FLPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:COG1113   200 FFPNGIGGVLAALQIVVFAFGGIELVGIAAAEAKDPEKTIPKAINSVIWRILLFYVGSLFVIL 262
proY PRK10580
putative proline-specific permease; Provisional
 1-142 6.73e-54

putative proline-specific permease; Provisional


Pssm-ID: 182566 [Multi-domain]  Cd Length: 457  Bit Score: 175.78  E-value: 6.73e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWAHGGF 80
Cdd:PRK10580  114 MGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGF 193

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10580  194 FSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIM 255
LysP COG0833
Amino acid permease [Amino acid transport and metabolism];
1-141 8.89e-48

Amino acid permease [Amino acid transport and metabolism];


Pssm-ID: 440595 [Multi-domain]  Cd Length: 467  Bit Score: 159.57  E-value: 8.89e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIaFGFgNDGVALGISNLWAHGGF 80
Cdd:COG0833   118 MQYWFPDVPVWIWSLLFLALIFLLNALSVKAFGESEFWFSLIKVITVIAFIIVGLLMI-FGI-IGGHAPGFSNFTTGDGP 195

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:COG0833   196 FPGGFLAILGVMMIVGFSFQGTELIGIAAGESENPEKTIPKAIRQVFWRILLFYILAIFVI 256
PRK10746 PRK10746
putative transport protein YifK; Provisional
 4-142 6.43e-45

putative transport protein YifK; Provisional


Pssm-ID: 182694  Cd Length: 461  Bit Score: 152.28  E-value: 6.43e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWAHGGFLPN 83
Cdd:PRK10746  118 WFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAG 197

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2500428429  84 GVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10746  198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIV 256
PRK10249 PRK10249
phenylalanine transporter; Provisional
 1-142 1.37e-40

phenylalanine transporter; Provisional


Pssm-ID: 236667  Cd Length: 458  Bit Score: 140.89  E-value: 1.37e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVigGVGIIAFGFGNDGVALGISNLWAHGGF 80
Cdd:PRK10249  126 MQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMI--GFGLWLLFSGHGGEKASIDNLWRYGGF 203

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10249  204 FATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLL 265
PRK11049 PRK11049
D-alanine/D-serine/glycine permease; Provisional
 4-142 8.00e-39

D-alanine/D-serine/glycine permease; Provisional


Pssm-ID: 236830  Cd Length: 469  Bit Score: 136.02  E-value: 8.00e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGN-DGVALGISNLWAHGGFLP 82
Cdd:PRK11049  128 WFPDLSDWVASLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSpTGVEASFAHLWNDGGMFP 207

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429  83 NGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK11049  208 KGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIM 267
PRK10238 PRK10238
aromatic amino acid transporter AroP;
4-142 7.12e-38

aromatic amino acid transporter AroP;


Pssm-ID: 182324 [Multi-domain]  Cd Length: 456  Bit Score: 133.54  E-value: 7.12e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGvGIIAFGfGNDGVALGISNLWAHGGFLPN 83
Cdd:PRK10238  120 WYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFG-GWLLFS-GNGGPQATVSNLWDQGGFLPH 197

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2500428429  84 GVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10238  198 GFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLL 256
GABAperm TIGR01773
gamma-aminobutyrate permease; GABA permease (gabP) catalyzes the translocation of ...
 4-142 6.17e-36

gamma-aminobutyrate permease; GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273797  Cd Length: 452  Bit Score: 128.06  E-value: 6.17e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIaFGFGNDGVALGISNLWAHGGFLPN 83
Cdd:TIGR01773 120 WFPDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAI-FGFAPGSEVSGFSNLTGKGGFFPN 198

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2500428429  84 GVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:TIGR01773 199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVV 257
PRK10836 PRK10836
lysine transporter; Provisional
 1-141 1.56e-30

lysine transporter; Provisional


Pssm-ID: 182767  Cd Length: 489  Bit Score: 114.15  E-value: 1.56e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIaFGFGNDGVALGISNLWAHGGF 80
Cdd:PRK10836  121 MSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMI-IGIFKGAEPAGWSNWTIGDAP 199

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:PRK10836  200 FAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILII 260
PRK15049 PRK15049
L-asparagine permease;
5-142 1.03e-29

L-asparagine permease;


Pssm-ID: 185009  Cd Length: 499  Bit Score: 112.02  E-value: 1.03e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   5 FPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGVALGISNLWAHGGFLPNG 84
Cdd:PRK15049  139 FGGVPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG 218

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2500428429  85 VQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK15049  219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV 276
PRK11387 PRK11387
S-methylmethionine permease;
1-141 3.95e-28

S-methylmethionine permease;


Pssm-ID: 236904  Cd Length: 471  Bit Score: 107.24  E-value: 3.95e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIA-MVIGGVGIIAFGFGNDGV-ALGISNLWAHG 78
Cdd:PRK11387  120 MQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAfIVLGGAAIFGFIPMQDGSpAPGLRNLTAEG 199

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500428429  79 GFlPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:PRK11387  200 WF-PHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVL 261
PRK10197 PRK10197
GABA permease;
4-142 7.06e-27

GABA permease;


Pssm-ID: 182297  Cd Length: 446  Bit Score: 103.55  E-value: 7.06e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAfGFGNDGVALGISNLWAHGGFLPN 83
Cdd:PRK10197  100 WVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAIS-GFYPYAEVSGISRLWDSGGFMPN 178

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2500428429  84 GVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:PRK10197  179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVV 237
2A0310 TIGR00913
amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]
 4-141 4.16e-26

amino acid permease (yeast); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273334  Cd Length: 478  Bit Score: 101.59  E-value: 4.16e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   4 WFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGvALGiSNLWAHGGFLPN 83
Cdd:TIGR00913 112 WTDKVNPAVWIAIFYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHG-YIG-FRYWHDPGAFAG 189

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2500428429  84 GV-----QGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:TIGR00913 190 GTiggrfKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLI 252
AA_permease pfam00324
Amino acid permease;
5-141 2.15e-24

Amino acid permease;


Pssm-ID: 366028 [Multi-domain]  Cd Length: 467  Bit Score: 97.01  E-value: 2.15e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   5 FPDVPR-WIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIGGVGIIAFGFGNDGValGISNLWAHGG---F 80
Cdd:pfam00324 107 VPDIPYlWVWGAVFLVLLTIINLVGVKWYGEAEFWFALIKIIAIIGFIIVGIILLSGGNPNDGA--IFRYLGDNGGknnF 184

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVI 141
Cdd:pfam00324 185 PPGFGKGFISVFVIAFFAFTGIELVGIAAGEVKNPEKSIPKAILQVIWRITIFYILSLLAI 245
PotE COG0531
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-142 4.68e-09

Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];


Pssm-ID: 440297 [Multi-domain]  Cd Length: 438  Bit Score: 53.36  E-value: 4.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429   1 MGVWFPDVPRWIWALAALVSMGTINLIAVKAFGEFEFWFALIKIVTIIAMVIggVGIIAFGFGNdgvalgisnlWAHGGF 80
Cdd:COG0531   116 LSSLFPAGGSVLIALVLILLLTLLNLRGVKESAKVNNILTVLKLLVLLLFIV--VGLFAFDPAN----------FTPFLP 183

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2500428429  81 LPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPNAIGSVFWRILLFYVGALFVIL 142
Cdd:COG0531   184 AGGGLSGVLAALALAFFAFTGFEAIANLAEEAKNPKRNIPRAIILSLLIVGVLYILVSLALT 245
2A0303 TIGR00906
cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides ...
 43-136 1.04e-07

cationic amino acid transport permease; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273330 [Multi-domain]  Cd Length: 557  Bit Score: 49.43  E-value: 1.04e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2500428429  43 KIVTIIAMVIGGVGIIAfGFGNDGVAL-GISNLWAHGGFLPNGVQGVLMSLQMVMFAYLGVEMIGLTAGEAKNPQKTIPN 121
Cdd:TIGR00906 188 KIFTAINILVLLFVIIA-GFTKADVANwSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPI 266

                          90
                  ....*....|....*
gi 2500428429 122 AIGSVFWRILLFYVG 136
Cdd:TIGR00906 267 GIVTSLLVCFVAYFL 281
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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