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Conserved domains on  [gi|2507248496|ref|WP_282978959|]
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branched-chain amino acid transporter permease [Microbacterium barkeri]

Protein Classification

branched-chain amino acid transporter permease( domain architecture ID 10004201)

branched-chain amino acid transporter permease similar to Bacillus subtilis AzlD and Corynebacterium glutamicum BrnE which belong to the LIV-E transporter family

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
1-101 1.35e-29

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


:

Pssm-ID: 441293  Cd Length: 108  Bit Score: 102.20  E-value: 1.35e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507248496   1 MDERYIAAAIAISGLITWALRAVPFALLRPLRDSELLAYVGERMPLGVMVILAVYTLHDVRP-EMESALPPLVALAVTVA 79
Cdd:COG1687     1 MTTGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILVVYCLKDVDFaAAPYGLPELIAIAVTVA 80

                          90       100
                  ....*....|....*....|..
gi 2507248496  80 LHLWRGNAVLSLFAGTVVCTAL 101
Cdd:COG1687    81 LHLWKRNALLSIFAGTALYMLL 102
 
Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
1-101 1.35e-29

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


Pssm-ID: 441293  Cd Length: 108  Bit Score: 102.20  E-value: 1.35e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507248496   1 MDERYIAAAIAISGLITWALRAVPFALLRPLRDSELLAYVGERMPLGVMVILAVYTLHDVRP-EMESALPPLVALAVTVA 79
Cdd:COG1687     1 MTTGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILVVYCLKDVDFaAAPYGLPELIAIAVTVA 80

                          90       100
                  ....*....|....*....|..
gi 2507248496  80 LHLWRGNAVLSLFAGTVVCTAL 101
Cdd:COG1687    81 LHLWKRNALLSIFAGTALYMLL 102
AzlD pfam05437
Branched-chain amino acid transport protein (AzlD); This family consists of a number of ...
 6-97 2.57e-07

Branched-chain amino acid transport protein (AzlD); This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.


Pssm-ID: 461652  Cd Length: 99  Bit Score: 44.85  E-value: 2.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507248496   6 IAAAIAISGLITWALRAVPFALLRPLRDSELLAYVGERMPLGVMVILAVYTL-HDVRPEMESALPP-LVALAVTVALHLW 83
Cdd:pfam05437   1 ILLAILGMALVTYLTRYLPLLLFSRRPLPPWLQRLLRYVPVAVLAALVAPDLlAPGGGLDPSLGNPrLLAALVAVALALL 80

                          90
                  ....*....|....
gi 2507248496  84 RGNAVLSLFAGTVV 97
Cdd:pfam05437  81 TRNLLLSILAGMAV 94
 
Name Accession Description Interval E-value
AzlD COG1687
Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];
1-101 1.35e-29

Branched-chain amino acid transport protein AzlD [Amino acid transport and metabolism];


Pssm-ID: 441293  Cd Length: 108  Bit Score: 102.20  E-value: 1.35e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507248496   1 MDERYIAAAIAISGLITWALRAVPFALLRPLRDSELLAYVGERMPLGVMVILAVYTLHDVRP-EMESALPPLVALAVTVA 79
Cdd:COG1687     1 MTTGYLLAAIAVMALATFLTRALPFLLFPRLKPPPLVQYLGRVLPAAIMGILVVYCLKDVDFaAAPYGLPELIAIAVTVA 80

                          90       100
                  ....*....|....*....|..
gi 2507248496  80 LHLWRGNAVLSLFAGTVVCTAL 101
Cdd:COG1687    81 LHLWKRNALLSIFAGTALYMLL 102
AzlD pfam05437
Branched-chain amino acid transport protein (AzlD); This family consists of a number of ...
 6-97 2.57e-07

Branched-chain amino acid transport protein (AzlD); This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.


Pssm-ID: 461652  Cd Length: 99  Bit Score: 44.85  E-value: 2.57e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2507248496   6 IAAAIAISGLITWALRAVPFALLRPLRDSELLAYVGERMPLGVMVILAVYTL-HDVRPEMESALPP-LVALAVTVALHLW 83
Cdd:pfam05437   1 ILLAILGMALVTYLTRYLPLLLFSRRPLPPWLQRLLRYVPVAVLAALVAPDLlAPGGGLDPSLGNPrLLAALVAVALALL 80

                          90
                  ....*....|....
gi 2507248496  84 RGNAVLSLFAGTVV 97
Cdd:pfam05437  81 TRNLLLSILAGMAV 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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