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Conserved domains on  [gi|2526084296|ref|WP_287725025|]
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gliding motility-associated C-terminal domain-containing protein, partial [Barnesiella sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CHU_C super family cl21544
CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from ...
 353-432 2.14e-14

CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from C. hutchinsonii giving rise to the CHU name. This domain adopts an immunoglobulin like domain that is foundat the C-terminus of various bacterial cell surface proteins. This domain was shown to be essential for localization of the CHU_3220 protein. It is likely that this domain target the proteins containing it to the type IX secretion system. This domain is cleaved off the protein which is then anchored to the outer membrane.


The actual alignment was detected with superfamily member pfam13585:

Pssm-ID: 473906 [Multi-domain]  Cd Length: 85  Bit Score: 68.36  E-value: 2.14e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526084296 353 LEAPNVFSPgTSPGVNDEWKVA-YKSIVSFKCWIFNKWGVQMFYFDSPDQGWDGKYRGKYVDPGVYYYVIEAKGANNKKM 431
Cdd:pfam13585   1 LIIPNAFSP-NGDGKNDTFVIRgIENYPNNELEIFNRWGQLVYESKNYDNGWDGTSNGEGLPAGTYFYVLKYTDGGKQTK 79


                  .
gi 2526084296 432 K 432
Cdd:pfam13585  80 K 80
 
Name Accession Description Interval E-value
CHU_C pfam13585
CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from ...
 353-432 2.14e-14

CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from C. hutchinsonii giving rise to the CHU name. This domain adopts an immunoglobulin like domain that is foundat the C-terminus of various bacterial cell surface proteins. This domain was shown to be essential for localization of the CHU_3220 protein. It is likely that this domain target the proteins containing it to the type IX secretion system. This domain is cleaved off the protein which is then anchored to the outer membrane.


Pssm-ID: 404473 [Multi-domain]  Cd Length: 85  Bit Score: 68.36  E-value: 2.14e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526084296 353 LEAPNVFSPgTSPGVNDEWKVA-YKSIVSFKCWIFNKWGVQMFYFDSPDQGWDGKYRGKYVDPGVYYYVIEAKGANNKKM 431
Cdd:pfam13585   1 LIIPNAFSP-NGDGKNDTFVIRgIENYPNNELEIFNRWGQLVYESKNYDNGWDGTSNGEGLPAGTYFYVLKYTDGGKQTK 79


                  .
gi 2526084296 432 K 432
Cdd:pfam13585  80 K 80
Bac_Flav_CTERM TIGR04131
gliding motility-associated C-terminal domain; This model describes a protein homology domain ...
 353-441 1.27e-07

gliding motility-associated C-terminal domain; This model describes a protein homology domain unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Proteins with this domain frequently pair with members of family TIGR03519, whether one such pair or many occur in a genome. More than 30 members may occur in one genome.


Pssm-ID: 275004 [Multi-domain]  Cd Length: 85  Bit Score: 49.04  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526084296 353 LEAPNVFSPgTSPGVNDEWKV----AYKSIVSFkcwIFNKWGVQMFYFDSPDQGWDGKYRGKYVDPGVYYYVIEakgANN 428
Cdd:TIGR04131   1 IGYPKFFTP-NGDGYNDTWNIigleNYPNAKIY---IFDRYGKLLKQLSPDSIGWDGTYNGKPLPSSDYWFKLE---YED 73

                          90
                  ....*....|...
gi 2526084296 429 KKmKLKGHINILR 441
Cdd:TIGR04131  74 GR-IFKGHFSLKR 85
 
Name Accession Description Interval E-value
CHU_C pfam13585
CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from ...
 353-432 2.14e-14

CHU_C Type IX secretion signal domain; This domain was initially identified from proteins from C. hutchinsonii giving rise to the CHU name. This domain adopts an immunoglobulin like domain that is foundat the C-terminus of various bacterial cell surface proteins. This domain was shown to be essential for localization of the CHU_3220 protein. It is likely that this domain target the proteins containing it to the type IX secretion system. This domain is cleaved off the protein which is then anchored to the outer membrane.


Pssm-ID: 404473 [Multi-domain]  Cd Length: 85  Bit Score: 68.36  E-value: 2.14e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526084296 353 LEAPNVFSPgTSPGVNDEWKVA-YKSIVSFKCWIFNKWGVQMFYFDSPDQGWDGKYRGKYVDPGVYYYVIEAKGANNKKM 431
Cdd:pfam13585   1 LIIPNAFSP-NGDGKNDTFVIRgIENYPNNELEIFNRWGQLVYESKNYDNGWDGTSNGEGLPAGTYFYVLKYTDGGKQTK 79


                  .
gi 2526084296 432 K 432
Cdd:pfam13585  80 K 80
Bac_Flav_CTERM TIGR04131
gliding motility-associated C-terminal domain; This model describes a protein homology domain ...
 353-441 1.27e-07

gliding motility-associated C-terminal domain; This model describes a protein homology domain unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility. Proteins with this domain frequently pair with members of family TIGR03519, whether one such pair or many occur in a genome. More than 30 members may occur in one genome.


Pssm-ID: 275004 [Multi-domain]  Cd Length: 85  Bit Score: 49.04  E-value: 1.27e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2526084296 353 LEAPNVFSPgTSPGVNDEWKV----AYKSIVSFkcwIFNKWGVQMFYFDSPDQGWDGKYRGKYVDPGVYYYVIEakgANN 428
Cdd:TIGR04131   1 IGYPKFFTP-NGDGYNDTWNIigleNYPNAKIY---IFDRYGKLLKQLSPDSIGWDGTYNGKPLPSSDYWFKLE---YED 73

                          90
                  ....*....|...
gi 2526084296 429 KKmKLKGHINILR 441
Cdd:TIGR04131  74 GR-IFKGHFSLKR 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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