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Conserved domains on  [gi|2534204920|ref|WP_291113102|]
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MULTISPECIES: flavodoxin [unclassified Dysgonomonas]

Protein Classification

flavodoxin( domain architecture ID 10013166)

flavodoxin is a low-potential electron donor to a number of redox enzymes; such as Escherichia coli flavodoxin 1 (FldA) that is involved in the reactivation of inactive cob(II)alamin in methionine synthase, and Azotobacter chroococcum flavodoxin B (NifF) that is the electron donor to nitrogenase

CATH:  3.40.50.360
Gene Ontology:  GO:0010181|GO:0009055
PubMed:  16465441
SCOP:  3001217

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-164 2.61e-70

flavodoxin FldA; Validated


:

Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 209.69  E-value: 2.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALF--DDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTG 78
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLgkDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  79 KKVALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVIDGRFVGLALDEDNEYNETDARLAAWV 157
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRgATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWV 160


                  ....*..
gi 2534204920 158 EDLKKYL 164
Cdd:PRK09267  161 KQIKPEF 167
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-164 2.61e-70

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 209.69  E-value: 2.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALF--DDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTG 78
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLgkDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  79 KKVALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVIDGRFVGLALDEDNEYNETDARLAAWV 157
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRgATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWV 160


                  ....*..
gi 2534204920 158 EDLKKYL 164
Cdd:PRK09267  161 KQIKPEF 167
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-164 3.69e-59

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 181.40  E-value: 3.69e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALF--DDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTGKK 80
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELgeDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  81 VALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVIDG-RFVGLALDEDNEYNETDARLAAWVE 158
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARgAKVVGFWPTDGYHFEASKAVRDGdKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 2534204920 159 DLKKYL 164
Cdd:TIGR01752 161 QIKPEF 166
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-160 5.27e-30

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 106.14  E-value: 5.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   4 IAIVYGSSTGATEAVAEKIQALFDDAA--LFNAESVSVDDLKPYDFLIFGASTTGvGDLQDDWEVLLPKVEKmDFTGKKV 81
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEALGAAGvdLFEIEDADLDDLEDYDLLILGTPTWA-GELPDDWEDFLEELKE-DLSGKKV 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2534204920  82 ALFSLGDSASFSTsfagAMYYIYKALKGKveivGSVSTDGYTFDDSDAvidgrfvglaldedNEYNETDARLAAWVEDL 160
Cdd:COG0716    79 ALFGTGDSSGYGD----ALGELKELLEEK----GAKVVGGYDFEGSKA--------------PDAEDTEERAEEWLKQL 135
Flavodoxin_1 pfam00258
Flavodoxin;
6-156 2.69e-16

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 71.25  E-value: 2.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   6 IVYGSSTGATEAVAEKIQALFdDAALFNAESVSVDDLKP-------YDFLIFGASTTGVGDLQD------DWEVLLPKVE 72
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGL-GEAGFEVDVVDLDDVDEtlseieeEDLLLVVVSTWGEGEPPDnakpfvDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  73 KMDFTGKKVALFSLGDSAsfSTSFAGAMYYIYKALKGK-VEIVgsvstdgytfddsdavidgrFVGLALDEDNEYNETDA 151
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSG--YEGFCGAAKKLDEKLSELgASRV--------------------GPLGEGDEDPQEDGLEE 137


                  ....*
gi 2534204920 152 RLAAW 156
Cdd:pfam00258 138 AFEAW 142
 
Name Accession Description Interval E-value
PRK09267 PRK09267
flavodoxin FldA; Validated
 1-164 2.61e-70

flavodoxin FldA; Validated


Pssm-ID: 236439 [Multi-domain]  Cd Length: 169  Bit Score: 209.69  E-value: 2.61e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALF--DDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTG 78
Cdd:PRK09267    1 MAKIGIFFGSDTGNTEDIAKMIQKKLgkDVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  79 KKVALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVIDGRFVGLALDEDNEYNETDARLAAWV 157
Cdd:PRK09267   81 KKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRgATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSELTDERIEAWV 160


                  ....*..
gi 2534204920 158 EDLKKYL 164
Cdd:PRK09267  161 KQIKPEF 167
flav_long TIGR01752
flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin ...
 3-164 3.69e-59

flavodoxin, long chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli. [Energy metabolism, Electron transport]


Pssm-ID: 273788 [Multi-domain]  Cd Length: 167  Bit Score: 181.40  E-value: 3.69e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALF--DDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTGKK 80
Cdd:TIGR01752   1 KIGIFYGTDTGNTEGIAEKIQKELgeDDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELDFTGKT 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  81 VALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVIDG-RFVGLALDEDNEYNETDARLAAWVE 158
Cdd:TIGR01752  81 VALFGLGDQEGYSETFCDGMGILYDKIKARgAKVVGFWPTDGYHFEASKAVRDGdKFVGLALDEDNQPDLTEERIEKWVE 160


                  ....*.
gi 2534204920 159 DLKKYL 164
Cdd:TIGR01752 161 QIKPEF 166
PRK12359 PRK12359
flavodoxin FldB; Provisional
 3-158 6.21e-44

flavodoxin FldB; Provisional


Pssm-ID: 183471 [Multi-domain]  Cd Length: 172  Bit Score: 142.78  E-value: 6.21e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALFDD--AALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDFTGKK 80
Cdd:PRK12359    2 KIGLFYGSSTCYTEMAAEKIRDIIGEelVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  81 VALFSLGDSASFSTSFAGAMYYIYKALKGK-VEIVGSVSTDGYTFDDSDAVI-DGR-FVGLALDEDNEYNETDARLAAWV 157
Cdd:PRK12359   82 VALYGMGDQLGYGEWFLDALGMLHDKLAPKgVKFVGYWPTEGYEFTSSKPLTaDGQlFVGLALDEVNQYDLSDERIQQWC 161


                  .
gi 2534204920 158 E 158
Cdd:PRK12359  162 E 162
FldA COG0716
Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: ...
 4-160 5.27e-30

Flavodoxin [Energy production and conversion]; Flavodoxin is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 440480 [Multi-domain]  Cd Length: 135  Bit Score: 106.14  E-value: 5.27e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   4 IAIVYGSSTGATEAVAEKIQALFDDAA--LFNAESVSVDDLKPYDFLIFGASTTGvGDLQDDWEVLLPKVEKmDFTGKKV 81
Cdd:COG0716     1 ILIVYGSTTGNTEKVAEAIAEALGAAGvdLFEIEDADLDDLEDYDLLILGTPTWA-GELPDDWEDFLEELKE-DLSGKKV 78

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2534204920  82 ALFSLGDSASFSTsfagAMYYIYKALKGKveivGSVSTDGYTFDDSDAvidgrfvglaldedNEYNETDARLAAWVEDL 160
Cdd:COG0716    79 ALFGTGDSSGYGD----ALGELKELLEEK----GAKVVGGYDFEGSKA--------------PDAEDTEERAEEWLKQL 135
flav_short TIGR01753
flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin ...
 4-100 4.62e-17

flavodoxin, short chain; Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction. [Energy metabolism, Electron transport]


Pssm-ID: 273789 [Multi-domain]  Cd Length: 140  Bit Score: 73.14  E-value: 4.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   4 IAIVYGSSTGATEAVA----EKIQALFDDAALFNAESVSVDDLKPYDFLIFGASTTGVGDL-QDDWEVLLPKVEKMDFTG 78
Cdd:TIGR01753   1 ILIVYASMTGNTEEMAniiaEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLeQDDFEPFFEELEDIDLGG 80

                          90       100
                  ....*....|....*....|..
gi 2534204920  79 KKVALFSLGDSASFstsFAGAM 100
Cdd:TIGR01753  81 KKVALFGSGDWGYE---FCEAV 99
Flavodoxin_1 pfam00258
Flavodoxin;
6-156 2.69e-16

Flavodoxin;


Pssm-ID: 425562 [Multi-domain]  Cd Length: 142  Bit Score: 71.25  E-value: 2.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   6 IVYGSSTGATEAVAEKIQALFdDAALFNAESVSVDDLKP-------YDFLIFGASTTGVGDLQD------DWEVLLPKVE 72
Cdd:pfam00258   1 IFYGSQTGNTEKLAEAIAEGL-GEAGFEVDVVDLDDVDEtlseieeEDLLLVVVSTWGEGEPPDnakpfvDWLLLFGTLE 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920  73 KMDFTGKKVALFSLGDSAsfSTSFAGAMYYIYKALKGK-VEIVgsvstdgytfddsdavidgrFVGLALDEDNEYNETDA 151
Cdd:pfam00258  80 DGDLSGLKYAVFGLGDSG--YEGFCGAAKKLDEKLSELgASRV--------------------GPLGEGDEDPQEDGLEE 137


                  ....*
gi 2534204920 152 RLAAW 156
Cdd:pfam00258 138 AFEAW 142
PRK06703 PRK06703
flavodoxin; Provisional
 1-90 9.27e-11

flavodoxin; Provisional


Pssm-ID: 235854 [Multi-domain]  Cd Length: 151  Bit Score: 56.69  E-value: 9.27e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALFD----DAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDF 76
Cdd:PRK06703    1 MAKILIAYASMSGNTEDIADLIKVSLDafdhEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDL 80

                          90
                  ....*....|....
gi 2534204920  77 TGKKVALFSLGDSA 90
Cdd:PRK06703   81 SGKKVAVFGSGDTA 94
PRK06756 PRK06756
flavodoxin; Provisional
 1-90 1.86e-08

flavodoxin; Provisional


Pssm-ID: 168663 [Multi-domain]  Cd Length: 148  Bit Score: 50.65  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKI-------QALFDDAALFNAESVSVddLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEK 73
Cdd:PRK06756    1 MSKLVMIFASMSGNTEEMADHIagviretENEIEVIDIMDSPEASI--LEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS 78

                          90
                  ....*....|....*..
gi 2534204920  74 MDFTGKKVALFSLGDSA 90
Cdd:PRK06756   79 IDLTGKKAAVFGSCDSA 95
PRK09004 PRK09004
FMN-binding protein MioC; Provisional
 1-120 8.33e-08

FMN-binding protein MioC; Provisional


Pssm-ID: 181608 [Multi-domain]  Cd Length: 146  Bit Score: 48.68  E-value: 8.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALFDDA----ALFNAEsvSVDDLKPYDFLIFGASTTGVGDLQDDwevLLP-----KV 71
Cdd:PRK09004    1 MADITLISGSTLGGAEYVADHLAEKLEEAgfstETLHGP--LLDDLSASGLWLIVTSTHGAGDLPDN---LQPffeelQE 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2534204920  72 EKMDFTGKKVALFSLGDSaSFSTsFAGAMYYIYKAL--KGKVEIVGSVSTD 120
Cdd:PRK09004   76 QKPDLSQVRFAAIGIGSS-EYDT-FCGAIDKLEQLLkaKGAKQIGETLKID 124
PRK05568 PRK05568
flavodoxin; Provisional
 1-84 7.20e-07

flavodoxin; Provisional


Pssm-ID: 235508 [Multi-domain]  Cd Length: 142  Bit Score: 45.96  E-value: 7.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKI----QALFDDAALFNAESVSVDDLKPYDFLIFGASTtgVGDLQDDWEVLLPKVEKM-- 74
Cdd:PRK05568    1 MKKINIIYWSGTGNTEAMANLIaegaKENGAEVKLLNVSEASVDDVKGADVVALGSPA--MGDEVLEEGEMEPFVESIss 78

                          90
                  ....*....|
gi 2534204920  75 DFTGKKVALF 84
Cdd:PRK05568   79 LVKGKKLVLF 88
HemG COG4635
Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport ...
 3-53 1.20e-05

Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain) [Coenzyme transport and metabolism];


Pssm-ID: 443673  Cd Length: 179  Bit Score: 43.34  E-value: 1.20e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALFD----DAALFNAESVSVDDLKPYDFLIFGAS 53
Cdd:COG4635     2 KVLILYASRDGQTRKIAERIAEVLReaghDVDLVDLEDAPDLDLAGYDAVVIGAS 56
PRK08105 PRK08105
flavodoxin; Provisional
 1-99 2.31e-05

flavodoxin; Provisional


Pssm-ID: 181230 [Multi-domain]  Cd Length: 149  Bit Score: 42.18  E-value: 2.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEAVAEKIQALFD----DAALFnaESVSVDDLKPY--DFLIFGASTTGVGDLQDDwevLLPKVEKM 74
Cdd:PRK08105    1 MAKVGIFVGTVYGNALLVAEEAEAILTaqghEVTLF--EDPELSDWQPYqdELVLVVTSTTGQGDLPDS---IVPLFQAL 75

                          90       100       110
                  ....*....|....*....|....*....|
gi 2534204920  75 D-----FTGKKVALFSLGDSaSFSTsFAGA 99
Cdd:PRK08105   76 KdtagyQPNLRYGVIALGDS-SYDN-FCGA 103
Flavodoxin_5 pfam12724
Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins ...
 6-87 3.63e-05

Flavodoxin domain; This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.


Pssm-ID: 463681 [Multi-domain]  Cd Length: 144  Bit Score: 41.48  E-value: 3.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   6 IVYGSSTGATEAVAEKIQALFDD-AALFNAESVS-VDDLKPYDFLIFGASTTGvGDLQDDWEVLLpKVEKMDFTGKKVAL 83
Cdd:pfam12724   2 ILYSSRDGQTKKIAERIAEELREeGELVDVEDVEaGEDLSSYDAVVIGASIYY-GKHLPELRQFV-TKHRDELSSKPVAF 79


                  ....
gi 2534204920  84 FSLG 87
Cdd:pfam12724  80 FSVN 83
PRK05723 PRK05723
flavodoxin; Provisional
 3-98 4.32e-04

flavodoxin; Provisional


Pssm-ID: 168208  Cd Length: 151  Bit Score: 38.62  E-value: 4.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALFDDAAL--FNAESVSVDDLKPY--DFLIFGASTTGVGDLQDDWEVLLPKVEKM---D 75
Cdd:PRK05723    2 KVAILSGSVYGTAEEVARHAESLLKAAGFeaWHNPRASLQDLQAFapEALLAVTSTTGMGELPDNLMPLYSAIRDQlpaA 81

                          90       100
                  ....*....|....*....|...
gi 2534204920  76 FTGKKVALFSLGDsASFSTSFAG 98
Cdd:PRK05723   82 WRGLPGAVIALGD-SSYGDTFCG 103
PRK07308 PRK07308
flavodoxin; Validated
 1-89 1.65e-03

flavodoxin; Validated


Pssm-ID: 180922 [Multi-domain]  Cd Length: 146  Bit Score: 37.08  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   1 MSKIAIVYGSSTGATEA----VAEKIQALFDDAALFNAESVSVDDLKPYDFLIFGASTTGVGDLQDDWEVLLPKVEKMDF 76
Cdd:PRK07308    1 MALAKIVYASMTGNTEEiadiVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDL 80

                          90
                  ....*....|...
gi 2534204920  77 TGKKVALFSLGDS 89
Cdd:PRK07308   81 SGKIYGVVGSGDT 93
PRK06242 PRK06242
flavodoxin; Provisional
 3-124 2.55e-03

flavodoxin; Provisional


Pssm-ID: 180484 [Multi-domain]  Cd Length: 150  Bit Score: 36.43  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGS-STGATEAVAEKIqALFDDAALFNAESVSVDDLKPYDFLIFGastTGVgDLQDDWEVLLPKVEKM-DFTGKK 80
Cdd:PRK06242    2 KALIVYASvHHGNTEKIAKAI-AEVLDAEVIDPGDVNPEDLSEYDLIGFG---SGI-YFGKFHKSLLKLIEKLpPVSGKK 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2534204920  81 VALfslgdsasFSTS---FAGAMYYIYKALKGK-VEIVGSVSTDGY-TF 124
Cdd:PRK06242   77 AFI--------FSTSglpFLKYHKALKKKLKEKgFEIVGEFSCKGFdTF 117
NorV COG0426
Flavorubredoxin [Energy production and conversion];
3-84 2.83e-03

Flavorubredoxin [Energy production and conversion];


Pssm-ID: 440195 [Multi-domain]  Cd Length: 390  Bit Score: 37.12  E-value: 2.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2534204920   3 KIAIVYGSSTGATEAVAEKIQALFDDA----ALFNAESVSVDDLKP----YDFLIFGASTTGVGDLQDDWEvLLPKVEKM 74
Cdd:COG0426   248 KVVIVYASMYGNTEKMAEAIAEGLTEEgvkvKLYDLEKTDPSEIITeifdAKGIVIGSPTYNGGAFPPIAD-LLGYLKGL 326

                          90
                  ....*....|
gi 2534204920  75 DFTGKKVALF 84
Cdd:COG0426   327 APKNKLAGAF 336
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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