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Conserved domains on  [gi|2536472809|ref|WP_293210633|]
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MULTISPECIES: DUF5676 family membrane protein [Alphaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5676 super family cl40929
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 13-88 9.07e-06

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


The actual alignment was detected with superfamily member pfam18926:

Pssm-ID: 436837  Cd Length: 82  Bit Score: 40.01  E-value: 9.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2536472809 13 ILPVGHSLSLFLLISYLLCVAFGLIAPEPMR-MYEAWAPL--LPGFEW--LTVQGFFFGLIGAYLYGWYIALVFVPLCNF 87
Cdd:pfam18926  2 TKKFGLALAITTAIVWLLCSILVALAPDALMaFFNAMMHGldLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYNA 81


                 .
gi 2536472809 88 F 88
Cdd:pfam18926 82 L 82
 
Name Accession Description Interval E-value
DUF5676 pfam18926
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 13-88 9.07e-06

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


Pssm-ID: 436837  Cd Length: 82  Bit Score: 40.01  E-value: 9.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2536472809 13 ILPVGHSLSLFLLISYLLCVAFGLIAPEPMR-MYEAWAPL--LPGFEW--LTVQGFFFGLIGAYLYGWYIALVFVPLCNF 87
Cdd:pfam18926  2 TKKFGLALAITTAIVWLLCSILVALAPDALMaFFNAMMHGldLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYNA 81


                 .
gi 2536472809 88 F 88
Cdd:pfam18926 82 L 82
 
Name Accession Description Interval E-value
DUF5676 pfam18926
2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins ...
 13-88 9.07e-06

2TM family of unknown function (DUF5676); This family of presumed integral membrane proteins is found in bacteria and archaea. Proteins in this family are approximately 90 amino acids in length and contain two predicted transmembrane helices.


Pssm-ID: 436837  Cd Length: 82  Bit Score: 40.01  E-value: 9.07e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2536472809 13 ILPVGHSLSLFLLISYLLCVAFGLIAPEPMR-MYEAWAPL--LPGFEW--LTVQGFFFGLIGAYLYGWYIALVFVPLCNF 87
Cdd:pfam18926  2 TKKFGLALAITTAIVWLLCSILVALAPDALMaFFNAMMHGldLGGMKWwtPTSAGFLLGLVVWSLLGGVAGWVIASIYNA 81


                 .
gi 2536472809 88 F 88
Cdd:pfam18926 82 L 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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