NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2539095782|ref|WP_295357019|]
View 

DUF2442 domain-containing protein [uncultured Succiniclasticum sp.]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2442 super family cl11052
Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has ...
 5-80 1.02e-04

Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.


The actual alignment was detected with superfamily member pfam10387:

Pssm-ID: 431248  Cd Length: 72  Bit Score: 36.45  E-value: 1.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2539095782  5 IKMVEPMPDYKLKVLFDDGKTVIYnvkeDIETIESYKDlvAVHGLFQQVQLDESRTCVYWNDQ-IDLPSDTIYEYGI 80
Cdd:pfam10387  1 VISVTYLDDYRLLVTFDDGRTLGV----PLSPFPRLEN--ATFEQLANVEVSPGGGGIHWPDLdEDISPEGLYAGAK 71
 
Name Accession Description Interval E-value
DUF2442 pfam10387
Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has ...
 5-80 1.02e-04

Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.


Pssm-ID: 431248  Cd Length: 72  Bit Score: 36.45  E-value: 1.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2539095782  5 IKMVEPMPDYKLKVLFDDGKTVIYnvkeDIETIESYKDlvAVHGLFQQVQLDESRTCVYWNDQ-IDLPSDTIYEYGI 80
Cdd:pfam10387  1 VISVTYLDDYRLLVTFDDGRTLGV----PLSPFPRLEN--ATFEQLANVEVSPGGGGIHWPDLdEDISPEGLYAGAK 71
 
Name Accession Description Interval E-value
DUF2442 pfam10387
Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has ...
 5-80 1.02e-04

Protein of unknown function (DUF2442); This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.


Pssm-ID: 431248  Cd Length: 72  Bit Score: 36.45  E-value: 1.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2539095782  5 IKMVEPMPDYKLKVLFDDGKTVIYnvkeDIETIESYKDlvAVHGLFQQVQLDESRTCVYWNDQ-IDLPSDTIYEYGI 80
Cdd:pfam10387  1 VISVTYLDDYRLLVTFDDGRTLGV----PLSPFPRLEN--ATFEQLANVEVSPGGGGIHWPDLdEDISPEGLYAGAK 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH