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Conserved domains on  [gi|2567559073|ref|WP_306461453|]
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TonB-dependent receptor [Colwellia ponticola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 54-263 5.72e-28

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


:

Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 120.73  E-value: 5.72e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   54 KSTADEKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNTnsqsnitATGLSTINLRNLG 133
Cdd:COG4771     23 DATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADAL-RLLPGVSVTRSGG-------RGGSSGISIRGLG 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  134 SQRTLTLIDGRRVVSNSHGsNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKAR-GGESVEG 212
Cdd:COG4771     95 GDRVLVLIDGVPVNNPALG-GGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSlGYGSNGN 173

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2567559073  213 GAKEFTLDLNYGSefaeGRGYVYLS-STYDKQYGLTYNDRKRAQIQESHSYD 263
Cdd:COG4771    174 GTYSGSLSLGGPG----DKLSFLLSgSYRDRDGYLDYRNGGFVGNSGYERYN 221
OM_channels super family cl21487
Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in ...
 82-1020 2.70e-27

Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end.


The actual alignment was detected with superfamily member cd01347:

Pssm-ID: 473880 [Multi-domain]  Cd Length: 635  Bit Score: 118.71  E-value: 2.70e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   82 MDNEAIEDTGLGSLAEiLIDELPQISESSSntnsqsniTATGLSTINLRNLGSQRTLTLIDGRRVVSNSHGSNaVSLSTI 161
Cdd:cd01347      5 ITAEDIEKQPATSLAD-LLRRIPGVSVTRG--------GGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRG-VDLNTI 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  162 PTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKARGGesveggakeftldlnYGSefaegrGYVYLSSTYD 241
Cdd:cd01347     75 PPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAG---------------YGS------DNSGSSGGGG 133

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  242 KQYGLTYNDRKRAQIQESHSYDDermcntmlteaeprdgecmrdisqadwrslsdsipggvfhegsggvGGFWYDGQTLR 321
Cdd:cd01347    134 FDVSGALADDGAFGARLYGAYRD----------------------------------------------GDGTIDGDGQA 167

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  322 DDWVEEQHGIdtdqfvmlktpdeglntAIKVDFELTDDITFYGQLQHSLNKSFNNkapesedesdlvitydpatgefgqi 401
Cdd:cd01347    168 DDSDEERYNV-----------------AGKLDWRPDDDTRLTLDAGYQDQDADGP------------------------- 205

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  402 dmgrikrsNPYVPAEIAAGGGSTIKWDRNFAEVGNIYTDNTRHTIRSWAGLQGtaFDGEWDWDVSVGYGKSTQeqirgne 481
Cdd:cd01347    206 --------GGTLPANGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGLEHDL--NDTGWTLRANLSYSYTDN------- 268

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  482 idvikasyaldaeyaddgvtiqcaddaaraagcVPMNLFGEGSITTEAADYIRANPTIDTEVEQLTFTGYMAGDLFDMPa 561
Cdd:cd01347    269 ---------------------------------DGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTGP- 314

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  562 GPVATAFGFEFRRDSQEVKTGGGaveggisfnyvpqysgemdvaeiFGEAGIPLLRDVTGAKSL------TADISARFAD 635
Cdd:cd01347    315 VAHTLTLGVEYRREELDEKQTAL-----------------------YAQDTIELTDDLTLTLGLrydhydQDSKDTIAGG 371

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  636 YSAKGVDLVASYRAGLVWEIVDGYAIRTNWARAQRAPSIDNLmsppagdydsdYTDICLGATATstdaghdncrketsia 715
Cdd:cd01347    372 TTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGEL-----------YGGGSHGGTAA---------------- 424

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  716 nyiaqngefdvadnnyspgVGNPDLFEETADTLTVGVTLapSFVEGLRIAIDYYDIAIEDALSTYSNDNIMEYCYNSela 795
Cdd:cd01347    425 -------------------VGNPNLKPEKSKQYELGLKY--DPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVY--- 480

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  796 wderggsnsfcndlkrdedgglievmqrdYNVDEISTSGIDLaiEYVHDFDDlgSIKFKSDWTHVldWTKTVQSPSgpvt 875
Cdd:cd01347    481 -----------------------------VNGGKARIRGVEL--EASYDLTD--GLGLTGSYTYT--DTEVKRTDG---- 521

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  876 eNYEGYYDNDIYDTQGSASLTWY--KEDWRVRWSTKYKGPitvnqgdeedwledmANNDENCAAGNAecvanpealmlnE 953
Cdd:cd01347    522 -ATTGNRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGK---------------QYADTANGNNTV------------K 573

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2567559073  954 IGSYITHSLSVSYDIslskGGDLRVFGGVNNIFDNQGDYSLGGRGHFYSGYGSSvGRFLYAGAEITF 1020
Cdd:cd01347    574 VPGYTLVDLSASYQF----TKNLTLRLGVNNLFDKDYYTSLSVRGSGLYGYYGP-GRTYYLSVSYKF 635
 
Name Accession Description Interval E-value
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 54-263 5.72e-28

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 120.73  E-value: 5.72e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   54 KSTADEKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNTnsqsnitATGLSTINLRNLG 133
Cdd:COG4771     23 DATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADAL-RLLPGVSVTRSGG-------RGGSSGISIRGLG 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  134 SQRTLTLIDGRRVVSNSHGsNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKAR-GGESVEG 212
Cdd:COG4771     95 GDRVLVLIDGVPVNNPALG-GGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSlGYGSNGN 173

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2567559073  213 GAKEFTLDLNYGSefaeGRGYVYLS-STYDKQYGLTYNDRKRAQIQESHSYD 263
Cdd:COG4771    174 GTYSGSLSLGGPG----DKLSFLLSgSYRDRDGYLDYRNGGFVGNSGYERYN 221
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 82-1020 2.70e-27

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 118.71  E-value: 2.70e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   82 MDNEAIEDTGLGSLAEiLIDELPQISESSSntnsqsniTATGLSTINLRNLGSQRTLTLIDGRRVVSNSHGSNaVSLSTI 161
Cdd:cd01347      5 ITAEDIEKQPATSLAD-LLRRIPGVSVTRG--------GGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRG-VDLNTI 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  162 PTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKARGGesveggakeftldlnYGSefaegrGYVYLSSTYD 241
Cdd:cd01347     75 PPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAG---------------YGS------DNSGSSGGGG 133

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  242 KQYGLTYNDRKRAQIQESHSYDDermcntmlteaeprdgecmrdisqadwrslsdsipggvfhegsggvGGFWYDGQTLR 321
Cdd:cd01347    134 FDVSGALADDGAFGARLYGAYRD----------------------------------------------GDGTIDGDGQA 167

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  322 DDWVEEQHGIdtdqfvmlktpdeglntAIKVDFELTDDITFYGQLQHSLNKSFNNkapesedesdlvitydpatgefgqi 401
Cdd:cd01347    168 DDSDEERYNV-----------------AGKLDWRPDDDTRLTLDAGYQDQDADGP------------------------- 205

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  402 dmgrikrsNPYVPAEIAAGGGSTIKWDRNFAEVGNIYTDNTRHTIRSWAGLQGtaFDGEWDWDVSVGYGKSTQeqirgne 481
Cdd:cd01347    206 --------GGTLPANGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGLEHDL--NDTGWTLRANLSYSYTDN------- 268

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  482 idvikasyaldaeyaddgvtiqcaddaaraagcVPMNLFGEGSITTEAADYIRANPTIDTEVEQLTFTGYMAGDLFDMPa 561
Cdd:cd01347    269 ---------------------------------DGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTGP- 314

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  562 GPVATAFGFEFRRDSQEVKTGGGaveggisfnyvpqysgemdvaeiFGEAGIPLLRDVTGAKSL------TADISARFAD 635
Cdd:cd01347    315 VAHTLTLGVEYRREELDEKQTAL-----------------------YAQDTIELTDDLTLTLGLrydhydQDSKDTIAGG 371

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  636 YSAKGVDLVASYRAGLVWEIVDGYAIRTNWARAQRAPSIDNLmsppagdydsdYTDICLGATATstdaghdncrketsia 715
Cdd:cd01347    372 TTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGEL-----------YGGGSHGGTAA---------------- 424

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  716 nyiaqngefdvadnnyspgVGNPDLFEETADTLTVGVTLapSFVEGLRIAIDYYDIAIEDALSTYSNDNIMEYCYNSela 795
Cdd:cd01347    425 -------------------VGNPNLKPEKSKQYELGLKY--DPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVY--- 480

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  796 wderggsnsfcndlkrdedgglievmqrdYNVDEISTSGIDLaiEYVHDFDDlgSIKFKSDWTHVldWTKTVQSPSgpvt 875
Cdd:cd01347    481 -----------------------------VNGGKARIRGVEL--EASYDLTD--GLGLTGSYTYT--DTEVKRTDG---- 521

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  876 eNYEGYYDNDIYDTQGSASLTWY--KEDWRVRWSTKYKGPitvnqgdeedwledmANNDENCAAGNAecvanpealmlnE 953
Cdd:cd01347    522 -ATTGNRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGK---------------QYADTANGNNTV------------K 573

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2567559073  954 IGSYITHSLSVSYDIslskGGDLRVFGGVNNIFDNQGDYSLGGRGHFYSGYGSSvGRFLYAGAEITF 1020
Cdd:cd01347    574 VPGYTLVDLSASYQF----TKNLTLRLGVNNLFDKDYYTSLSVRGSGLYGYYGP-GRTYYLSVSYKF 635
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
59-1004 9.74e-18

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 88.35  E-value: 9.74e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   59 EKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNTnsqsnitatGLSTINLR--NLGSQR 136
Cdd:COG1629      2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLL-RRVPGVSVTSAGG---------GAGQISIRgfGGGGNR 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  137 TLTLIDGRRVVSNSHGSNAvsLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGfafkarggesveggaKE 216
Cdd:COG1629     72 VLVLVDGVPLNDPSGGDGG--LSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDG---------------KG 134

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  217 FTLDLNYGSeFAEGRGYVYLSSTYDKQYGLtyndrkraqiqeshsyddermcntmlteaeprdgecmrdisqadwrslsd 296
Cdd:COG1629    135 GEVSASYGS-YGTYRASLSLSGGNGKLAYR-------------------------------------------------- 163

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  297 sipggvfhegsggVGGFWYDGQTLRDDwveeqhgidtdqfvmlkTPDEGLNTAIKVDFELTDDITFygqlqhslnksfnn 376
Cdd:COG1629    164 -------------LSASYRDSDGYRDN-----------------SDSDRYNLRAKLGYQLGDDTRL-------------- 199

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  377 kapesedesDLVITYdpatgefgqidmGRIKRSNPYVPAEIAAGGGSTIKWDRNFAEVGNIYTDNTRHTirswAGLQGTA 456
Cdd:COG1629    200 ---------TLSASY------------SDSDQDSPGYLTLAALRPRGAMDDGTNPYSNDTDDNTRDRYS----LSLEYEH 254

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  457 FDGEWDWDVSVGYGKSTQeqirgneidvikasyaldaeyaddgvtiqcaddaaraagcvpmNLFGEGSITTEAADYIRan 536
Cdd:COG1629    255 LGDGLKLSASAYYRYDDT-------------------------------------------DLDSDFTPTPADGGTLE-- 289

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  537 ptiDTEVEQLTFTGYMAGDLFDMPAGPVATAFGFEFRRDSQEVKTGGGAVEGGI--SFNYVPQYSGEMDVAEIFGEAGIP 614
Cdd:COG1629    290 ---QTDFDNRTYGLELRLTYDLGFGGKHTLLVGLDYQRQDLDGSGYPLDLGSGSlpTLTSGADDDGTTTSLALYAQDTYK 366

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  615 LlrdvtgAKSLTADISARFADYSAKGVDLVA--------------SYRAGLVWEIVDGYAIRTNWARAQRAPSIDNLMSP 680
Cdd:COG1629    367 L------TDKLTLTAGLRYDYVSYDVDDTVTgtdsasgsrsysafSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYAN 440

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  681 PAGDYdsdytdiclgatatstdaghdncrketsianyiaqngefdvadnnyspGVGNPDLFEETADTLTVGVTLAPsFVE 760
Cdd:COG1629    441 GTDPY------------------------------------------------SVGNPDLKPETSTNYELGLRYRL-LDG 471

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  761 GLRIAIDYYDIAIEDALSTYSNDNimeycynselawderggsnsfcndlkrdeDGGLIEVMQrdyNVDEISTSGIDLAIE 840
Cdd:COG1629    472 RLSLSLALFYSDVDNEILSVPLPN-----------------------------DSGFSTYYT---NAGKARSYGVELELS 519

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  841 YvhDFDDLGSIKFKsdwthvLDWTKTVQSPSGPVTENYEGYYDNDIYDTQGSASLTW-YKEDWRVRWSTKYKGPITVNQg 919
Cdd:COG1629    520 Y--QLTPGLSLNAS------YSYTDAKFDDDTDGSADLDGNRLPGVPPLTANLGLTYeFPGGWSLGLGVRYVGDRYLDD- 590

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  920 deedwledmANNDENcaagnaecvanpealmlneIGSYITHSLSVSYDIslskGGDLRVFGGVNNIFDNQGDYSLGGRGH 999
Cdd:COG1629    591 ---------ANTQGA-------------------PGGYTLVDLGAGYRF----GDNLTLSLGVDNLFDKKYATSLSVRAS 638


                   ....*
gi 2567559073 1000 FYSGY 1004
Cdd:COG1629    639 NVRGF 643
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 74-188 1.60e-17

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 78.85  E-value: 1.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   74 TVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSntnsqsniTATGLSTINLRNLGSQRTLTLIDGRRVVSNSHGS 153
Cdd:pfam07715    4 DTPGSVSVVTAEDIEDQGATNLADAL-RGVPGVSVSSG--------GGGGGSSISIRGFGSNRVLVLVDGVPLNSGGGGS 74

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 2567559073  154 naVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGV 188
Cdd:pfam07715   75 --VDLNSIDPEDIERVEVLKGPASALYGSGAIGGV 107
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
56-199 1.43e-15

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 81.19  E-value: 1.43e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   56 TADEKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISesssntnsqsnITATG----LSTINLRN 131
Cdd:PRK10641    23 TSPDTLVVTANRFQQPVSTVLAPTTVVTRDDIDRWQSKSVNDVL-RRLPGVD-----------IAQNGglgqLSSLFIRG 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2567559073  132 LGSQRTLTLIDGRRVvsNSHG-SNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEG 199
Cdd:PRK10641    91 TNSSHVLVLIDGVRL--NQAGiSGSADLSQIPISLVQRIEYIRGPRSAVYGSDAIGGVVNIITTRDKPG 157
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 427-1019 1.80e-15

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 80.20  E-value: 1.80e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  427 WDRNFAEVGNIYTDNTRHTIRSWAGLQGTAFDGEWDWDVSVGYGKSTQEQIRGN-EIDVIKASYALDAEYADDGVTIQCA 505
Cdd:pfam00593    2 WQLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYsDTDRKRLSLGYDYDLGDGLSWLSTL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  506 DDAARAAGCVPMNLFGEGSITTeAADYIRANPTIDTEVEQLTFTGYMAGDlFDMPAGPVATAFGFEFRRDSQEVKTGGGA 585
Cdd:pfam00593   82 RLGLRYSSLDGDYTSNSSGLSG-AGDYLSDDRLYGLYGLDGDLELSLDLS-HDLLLGVELRTAGLDYRRLDDDAYDPYDP 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  586 VEGGISFNYvpqySGEMDVAEIFGEAGIPLlrdvtgAKSLTADISARFADYSAKGVDLVA------------SYRAGLVW 653
Cdd:pfam00593  160 ANPSSSSYS----DTTTDSYGLYLQDNIKL------TDRLTLTLGLRYDHYSTDGDDGNGggdnfsrsysafSPRLGLVY 229

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  654 EIVDGYAIRTNWARAQRAPSIDNLMSPPAGdydsdytdiclgatatstdaghdncrketsianyiaqngefdvaDNNYSP 733
Cdd:pfam00593  230 KPTDNLSLYASYSRGFRAPSLGELYGSGSG--------------------------------------------GGGGAV 265

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  734 GVGNPDLFEETADTLTVGVTLapsFVEGLRIAIDYYDIAIEDALSTYSNDNIMEYCYNselawderggsnsfcndlkrde 813
Cdd:pfam00593  266 AGGNPDLKPETSDNYELGLKY---DDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVY---------------------- 320

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  814 dgglievmqRDYNVDEISTSGIDLAIEYvHDFDDLGSIKfksdwthVLDWTKTVQSPSGpvteNYEGYYDNDIYDTQGSA 893
Cdd:pfam00593  321 ---------TYTNVGKARIRGVELELSG-RLWGLGLSGG-------GYTYTDADDDADA----DDTGNPLPNVPRHTANL 379

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  894 SLTWYK--EDWRVRWSTKYKGPITVNQGDEEDwledmanndencaagnaecvanpealmLNEIGSYITHSLSVSYDISls 971
Cdd:pfam00593  380 GLTYDFplGGWGARLGARYVGSGERRYGDAAN---------------------------TFKTPGYTLVDLSAGYRLN-- 430

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*...
gi 2567559073  972 kgGDLRVFGGVNNIFDNQGDYSLGGRGHFYSGYgSSVGRFLYAGAEIT 1019
Cdd:pfam00593  431 --KNLTLRLGVNNLFDKYYKRYYSSGGGNLGGY-PGPGRTFYLGLSYK 475
TonB-hemin TIGR01785
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ...
 59-237 5.08e-12

TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273807 [Multi-domain]  Cd Length: 665  Bit Score: 70.11  E-value: 5.08e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   59 EKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISesssntnsqsnITATGLS---TINLRNLGSQ 135
Cdd:TIGR01785    2 DTVTVTATRTRQVLSEAPASVSVISGEQIESKQANNLADAL-NTVPGVD-----------VTGGGRPpgqSINIRGLQDN 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  136 RTLTLIDGRRVVSNSHGSNaVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEgfafKARGGESVEGGAK 215
Cdd:TIGR01785   70 RVLVVVDGARQNYQRGGAH-NGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAD----LLRPGQLFGGLAK 144

                          170       180
                   ....*....|....*....|..
gi 2567559073  216 eftldLNYGSEFAEGRGYVYLS 237
Cdd:TIGR01785  145 -----LSYGSNNNSFGGSVAVA 161
 
Name Accession Description Interval E-value
FepA COG4771
Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and ...
 54-263 5.72e-28

Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism];


Pssm-ID: 443803 [Multi-domain]  Cd Length: 612  Bit Score: 120.73  E-value: 5.72e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   54 KSTADEKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNTnsqsnitATGLSTINLRNLG 133
Cdd:COG4771     23 DATELEEVVVTATRTEQSLSDAPASVSVITAEEIEKLGATDLADAL-RLLPGVSVTRSGG-------RGGSSGISIRGLG 94

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  134 SQRTLTLIDGRRVVSNSHGsNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKAR-GGESVEG 212
Cdd:COG4771     95 GDRVLVLIDGVPVNNPALG-GGGDLSYIPPDDIERIEVIRGPASALYGSDAIGGVINIITKKPTDELEGSVSlGYGSNGN 173

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2567559073  213 GAKEFTLDLNYGSefaeGRGYVYLS-STYDKQYGLTYNDRKRAQIQESHSYD 263
Cdd:COG4771    174 GTYSGSLSLGGPG----DKLSFLLSgSYRDRDGYLDYRNGGFVGNSGYERYN 221
ligand_gated_channel cd01347
TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) ...
 82-1020 2.70e-27

TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.


Pssm-ID: 238657 [Multi-domain]  Cd Length: 635  Bit Score: 118.71  E-value: 2.70e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   82 MDNEAIEDTGLGSLAEiLIDELPQISESSSntnsqsniTATGLSTINLRNLGSQRTLTLIDGRRVVSNSHGSNaVSLSTI 161
Cdd:cd01347      5 ITAEDIEKQPATSLAD-LLRRIPGVSVTRG--------GGGGGSTISIRGFGPDRTLVLVDGLPLASSNYGRG-VDLNTI 74

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  162 PTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKARGGesveggakeftldlnYGSefaegrGYVYLSSTYD 241
Cdd:cd01347     75 PPELIERVEVLKGPSSALYGSGAIGGVVNIITKRPTDEFGGSVTAG---------------YGS------DNSGSSGGGG 133

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  242 KQYGLTYNDRKRAQIQESHSYDDermcntmlteaeprdgecmrdisqadwrslsdsipggvfhegsggvGGFWYDGQTLR 321
Cdd:cd01347    134 FDVSGALADDGAFGARLYGAYRD----------------------------------------------GDGTIDGDGQA 167

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  322 DDWVEEQHGIdtdqfvmlktpdeglntAIKVDFELTDDITFYGQLQHSLNKSFNNkapesedesdlvitydpatgefgqi 401
Cdd:cd01347    168 DDSDEERYNV-----------------AGKLDWRPDDDTRLTLDAGYQDQDADGP------------------------- 205

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  402 dmgrikrsNPYVPAEIAAGGGSTIKWDRNFAEVGNIYTDNTRHTIRSWAGLQGtaFDGEWDWDVSVGYGKSTQeqirgne 481
Cdd:cd01347    206 --------GGTLPANGTGSSLGGGPSSNTNGDRDWDYRDRYRKRASLGLEHDL--NDTGWTLRANLSYSYTDN------- 268

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  482 idvikasyaldaeyaddgvtiqcaddaaraagcVPMNLFGEGSITTEAADYIRANPTIDTEVEQLTFTGYMAGDLFDMPa 561
Cdd:cd01347    269 ---------------------------------DGDPLILNGGNNAAGGDLGRSGYSSERDTTQLGFDAGLNAPFGTGP- 314

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  562 GPVATAFGFEFRRDSQEVKTGGGaveggisfnyvpqysgemdvaeiFGEAGIPLLRDVTGAKSL------TADISARFAD 635
Cdd:cd01347    315 VAHTLTLGVEYRREELDEKQTAL-----------------------YAQDTIELTDDLTLTLGLrydhydQDSKDTIAGG 371

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  636 YSAKGVDLVASYRAGLVWEIVDGYAIRTNWARAQRAPSIDNLmsppagdydsdYTDICLGATATstdaghdncrketsia 715
Cdd:cd01347    372 TTAKKSYSHWSPSLGLVYKLTDGLSLYASYSQGFRAPSLGEL-----------YGGGSHGGTAA---------------- 424

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  716 nyiaqngefdvadnnyspgVGNPDLFEETADTLTVGVTLapSFVEGLRIAIDYYDIAIEDALSTYSNDNIMEYCYNSela 795
Cdd:cd01347    425 -------------------VGNPNLKPEKSKQYELGLKY--DPGDGLTLSAALFRIDIKNEIVSTPTNTGLGLVTVY--- 480

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  796 wderggsnsfcndlkrdedgglievmqrdYNVDEISTSGIDLaiEYVHDFDDlgSIKFKSDWTHVldWTKTVQSPSgpvt 875
Cdd:cd01347    481 -----------------------------VNGGKARIRGVEL--EASYDLTD--GLGLTGSYTYT--DTEVKRTDG---- 521

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  876 eNYEGYYDNDIYDTQGSASLTWY--KEDWRVRWSTKYKGPitvnqgdeedwledmANNDENCAAGNAecvanpealmlnE 953
Cdd:cd01347    522 -ATTGNRLPGIPKHTANLGLDYElpDEGLTAGGGVRYRGK---------------QYADTANGNNTV------------K 573

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2567559073  954 IGSYITHSLSVSYDIslskGGDLRVFGGVNNIFDNQGDYSLGGRGHFYSGYGSSvGRFLYAGAEITF 1020
Cdd:cd01347    574 VPGYTLVDLSASYQF----TKNLTLRLGVNNLFDKDYYTSLSVRGSGLYGYYGP-GRTYYLSVSYKF 635
BtuB COG4206
Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];
61-255 3.31e-26

Outer membrane cobalamin receptor protein BtuB [Coenzyme transport and metabolism];


Pssm-ID: 443355 [Multi-domain]  Cd Length: 276  Bit Score: 109.58  E-value: 3.31e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   61 ITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNtnsqsniTATGLSTINLRNLGSQRTLTL 140
Cdd:COG4206      1 VVVTATRLEQSKSDLTGSVTVIDAEELERSGATSLADAL-RRVPGVQVSSSG-------GPGSAASISIRGLGSNQTLVL 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  141 IDGRRVVSNSHGSnaVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKARGGESvEGGAKEFTLD 220
Cdd:COG4206     73 IDGVPLNDPSLGG--VDLSLIPPDDIERIEVLKGAASALYGSDAIGGVINITTKKGKKGFKGSVSASYG-SFGTRRLSAS 149

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2567559073  221 LNYGSefaeGRGYVYLSSTYDKQYGLTYNDRKRAQ 255
Cdd:COG4206    150 LSGGA----GKFSYSLSASYRRSDGYRYNDPDLRN 180
CirA COG1629
Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];
59-1004 9.74e-18

Outer membrane receptor protein, Fe transport [Inorganic ion transport and metabolism];


Pssm-ID: 441236 [Multi-domain]  Cd Length: 644  Bit Score: 88.35  E-value: 9.74e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   59 EKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSNTnsqsnitatGLSTINLR--NLGSQR 136
Cdd:COG1629      2 EEVVVTATRTDESLQDVPGSVSVISREQLEDQPATDLGDLL-RRVPGVSVTSAGG---------GAGQISIRgfGGGGNR 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  137 TLTLIDGRRVVSNSHGSNAvsLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGfafkarggesveggaKE 216
Cdd:COG1629     72 VLVLVDGVPLNDPSGGDGG--LSYIDPEDIERVEVLRGPSSALYGSGALGGVINIVTKKPKDG---------------KG 134

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  217 FTLDLNYGSeFAEGRGYVYLSSTYDKQYGLtyndrkraqiqeshsyddermcntmlteaeprdgecmrdisqadwrslsd 296
Cdd:COG1629    135 GEVSASYGS-YGTYRASLSLSGGNGKLAYR-------------------------------------------------- 163

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  297 sipggvfhegsggVGGFWYDGQTLRDDwveeqhgidtdqfvmlkTPDEGLNTAIKVDFELTDDITFygqlqhslnksfnn 376
Cdd:COG1629    164 -------------LSASYRDSDGYRDN-----------------SDSDRYNLRAKLGYQLGDDTRL-------------- 199

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  377 kapesedesDLVITYdpatgefgqidmGRIKRSNPYVPAEIAAGGGSTIKWDRNFAEVGNIYTDNTRHTirswAGLQGTA 456
Cdd:COG1629    200 ---------TLSASY------------SDSDQDSPGYLTLAALRPRGAMDDGTNPYSNDTDDNTRDRYS----LSLEYEH 254

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  457 FDGEWDWDVSVGYGKSTQeqirgneidvikasyaldaeyaddgvtiqcaddaaraagcvpmNLFGEGSITTEAADYIRan 536
Cdd:COG1629    255 LGDGLKLSASAYYRYDDT-------------------------------------------DLDSDFTPTPADGGTLE-- 289

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  537 ptiDTEVEQLTFTGYMAGDLFDMPAGPVATAFGFEFRRDSQEVKTGGGAVEGGI--SFNYVPQYSGEMDVAEIFGEAGIP 614
Cdd:COG1629    290 ---QTDFDNRTYGLELRLTYDLGFGGKHTLLVGLDYQRQDLDGSGYPLDLGSGSlpTLTSGADDDGTTTSLALYAQDTYK 366

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  615 LlrdvtgAKSLTADISARFADYSAKGVDLVA--------------SYRAGLVWEIVDGYAIRTNWARAQRAPSIDNLMSP 680
Cdd:COG1629    367 L------TDKLTLTAGLRYDYVSYDVDDTVTgtdsasgsrsysafSPSLGLTYQLSPNLSLYASYSRGFRAPTFGELYAN 440

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  681 PAGDYdsdytdiclgatatstdaghdncrketsianyiaqngefdvadnnyspGVGNPDLFEETADTLTVGVTLAPsFVE 760
Cdd:COG1629    441 GTDPY------------------------------------------------SVGNPDLKPETSTNYELGLRYRL-LDG 471

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  761 GLRIAIDYYDIAIEDALSTYSNDNimeycynselawderggsnsfcndlkrdeDGGLIEVMQrdyNVDEISTSGIDLAIE 840
Cdd:COG1629    472 RLSLSLALFYSDVDNEILSVPLPN-----------------------------DSGFSTYYT---NAGKARSYGVELELS 519

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  841 YvhDFDDLGSIKFKsdwthvLDWTKTVQSPSGPVTENYEGYYDNDIYDTQGSASLTW-YKEDWRVRWSTKYKGPITVNQg 919
Cdd:COG1629    520 Y--QLTPGLSLNAS------YSYTDAKFDDDTDGSADLDGNRLPGVPPLTANLGLTYeFPGGWSLGLGVRYVGDRYLDD- 590

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  920 deedwledmANNDENcaagnaecvanpealmlneIGSYITHSLSVSYDIslskGGDLRVFGGVNNIFDNQGDYSLGGRGH 999
Cdd:COG1629    591 ---------ANTQGA-------------------PGGYTLVDLGAGYRF----GDNLTLSLGVDNLFDKKYATSLSVRAS 638


                   ....*
gi 2567559073 1000 FYSGY 1004
Cdd:COG1629    639 NVRGF 643
Plug pfam07715
TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently ...
 74-188 1.60e-17

TonB-dependent Receptor Plug Domain; The Plug domain has been shown to be an independently folding subunit of the TonB-dependent receptors. It acts as the channel gate, blocking the pore until the channel is bound by ligand. At this point it under goes conformational changes opens the channel.


Pssm-ID: 462243 [Multi-domain]  Cd Length: 107  Bit Score: 78.85  E-value: 1.60e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   74 TVATPLATMDNEAIEDTGLGSLAEILiDELPQISESSSntnsqsniTATGLSTINLRNLGSQRTLTLIDGRRVVSNSHGS 153
Cdd:pfam07715    4 DTPGSVSVVTAEDIEDQGATNLADAL-RGVPGVSVSSG--------GGGGGSSISIRGFGSNRVLVLVDGVPLNSGGGGS 74

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 2567559073  154 naVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGV 188
Cdd:pfam07715   75 --VDLNSIDPEDIERVEVLKGPASALYGSGAIGGV 107
btuB PRK10641
TonB-dependent vitamin B12 receptor BtuB;
56-199 1.43e-15

TonB-dependent vitamin B12 receptor BtuB;


Pssm-ID: 236730 [Multi-domain]  Cd Length: 614  Bit Score: 81.19  E-value: 1.43e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   56 TADEKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISesssntnsqsnITATG----LSTINLRN 131
Cdd:PRK10641    23 TSPDTLVVTANRFQQPVSTVLAPTTVVTRDDIDRWQSKSVNDVL-RRLPGVD-----------IAQNGglgqLSSLFIRG 90

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2567559073  132 LGSQRTLTLIDGRRVvsNSHG-SNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEG 199
Cdd:PRK10641    91 TNSSHVLVLIDGVRL--NQAGiSGSADLSQIPISLVQRIEYIRGPRSAVYGSDAIGGVVNIITTRDKPG 157
TonB_dep_Rec pfam00593
TonB dependent receptor; This model now only covers the conserved part of the barrel structure.
 427-1019 1.80e-15

TonB dependent receptor; This model now only covers the conserved part of the barrel structure.


Pssm-ID: 395474 [Multi-domain]  Cd Length: 475  Bit Score: 80.20  E-value: 1.80e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  427 WDRNFAEVGNIYTDNTRHTIRSWAGLQGTAFDGEWDWDVSVGYGKSTQEQIRGN-EIDVIKASYALDAEYADDGVTIQCA 505
Cdd:pfam00593    2 WQLSLDLLGDDTLLTLGYDYSRYTDGLDLGLTLDGYGNDGGYLGDRPLYYGRDYsDTDRKRLSLGYDYDLGDGLSWLSTL 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  506 DDAARAAGCVPMNLFGEGSITTeAADYIRANPTIDTEVEQLTFTGYMAGDlFDMPAGPVATAFGFEFRRDSQEVKTGGGA 585
Cdd:pfam00593   82 RLGLRYSSLDGDYTSNSSGLSG-AGDYLSDDRLYGLYGLDGDLELSLDLS-HDLLLGVELRTAGLDYRRLDDDAYDPYDP 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  586 VEGGISFNYvpqySGEMDVAEIFGEAGIPLlrdvtgAKSLTADISARFADYSAKGVDLVA------------SYRAGLVW 653
Cdd:pfam00593  160 ANPSSSSYS----DTTTDSYGLYLQDNIKL------TDRLTLTLGLRYDHYSTDGDDGNGggdnfsrsysafSPRLGLVY 229

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  654 EIVDGYAIRTNWARAQRAPSIDNLMSPPAGdydsdytdiclgatatstdaghdncrketsianyiaqngefdvaDNNYSP 733
Cdd:pfam00593  230 KPTDNLSLYASYSRGFRAPSLGELYGSGSG--------------------------------------------GGGGAV 265

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  734 GVGNPDLFEETADTLTVGVTLapsFVEGLRIAIDYYDIAIEDALSTYSNDNIMEYCYNselawderggsnsfcndlkrde 813
Cdd:pfam00593  266 AGGNPDLKPETSDNYELGLKY---DDGRLSLSLALFYIDIKNLITSDPDGPGLGGTVY---------------------- 320

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  814 dgglievmqRDYNVDEISTSGIDLAIEYvHDFDDLGSIKfksdwthVLDWTKTVQSPSGpvteNYEGYYDNDIYDTQGSA 893
Cdd:pfam00593  321 ---------TYTNVGKARIRGVELELSG-RLWGLGLSGG-------GYTYTDADDDADA----DDTGNPLPNVPRHTANL 379

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  894 SLTWYK--EDWRVRWSTKYKGPITVNQGDEEDwledmanndencaagnaecvanpealmLNEIGSYITHSLSVSYDISls 971
Cdd:pfam00593  380 GLTYDFplGGWGARLGARYVGSGERRYGDAAN---------------------------TFKTPGYTLVDLSAGYRLN-- 430

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|....*...
gi 2567559073  972 kgGDLRVFGGVNNIFDNQGDYSLGGRGHFYSGYgSSVGRFLYAGAEIT 1019
Cdd:pfam00593  431 --KNLTLRLGVNNLFDKYYKRYYSSGGGNLGGY-PGPGRTFYLGLSYK 475
PRK13483 PRK13483
ligand-gated channel protein;
127-198 7.91e-13

ligand-gated channel protein;


Pssm-ID: 184080 [Multi-domain]  Cd Length: 660  Bit Score: 72.50  E-value: 7.91e-13
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2567559073  127 INLRNLGSQRTLTLIDGRRVVS-----NSHGSNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKE 198
Cdd:PRK13483    91 ISLRGMGSQYTLILVDGKRQSSretrpNSDGPGVEQAWTPPLAAIERIEVIRGPMSSLYGSDAIGGVINIITRKVPN 167
TonB-hemin TIGR01785
TonB-dependent heme/hemoglobin receptor family protein; This model represents the ...
 59-237 5.08e-12

TonB-dependent heme/hemoglobin receptor family protein; This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273807 [Multi-domain]  Cd Length: 665  Bit Score: 70.11  E-value: 5.08e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   59 EKITVTGSRLRRDSFTVATPLATMDNEAIEDTGLGSLAEILiDELPQISesssntnsqsnITATGLS---TINLRNLGSQ 135
Cdd:TIGR01785    2 DTVTVTATRTRQVLSEAPASVSVISGEQIESKQANNLADAL-NTVPGVD-----------VTGGGRPpgqSINIRGLQDN 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  136 RTLTLIDGRRVVSNSHGSNaVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEgfafKARGGESVEGGAK 215
Cdd:TIGR01785   70 RVLVVVDGARQNYQRGGAH-NGSLFVDPELLKRIEIVKGPSSSLYGSGALGGVVAFRTKDAAD----LLRPGQLFGGLAK 144

                          170       180
                   ....*....|....*....|..
gi 2567559073  216 eftldLNYGSEFAEGRGYVYLS 237
Cdd:TIGR01785  145 -----LSYGSNNNSFGGSVAVA 161
PRK10064 PRK10064
catecholate siderophore receptor CirA; Provisional
 126-195 2.77e-11

catecholate siderophore receptor CirA; Provisional


Pssm-ID: 236646 [Multi-domain]  Cd Length: 663  Bit Score: 67.60  E-value: 2.77e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2567559073  126 TINLRNLGSQRTLTLIDGRRVVSNS--HGSNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQ 195
Cdd:PRK10064    88 GVSIRGLDSSYTLILIDGKRVNSRNavFRHNDFDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKK 159
PRK13528 PRK13528
outer membrane receptor FepA; Provisional
 127-195 2.02e-10

outer membrane receptor FepA; Provisional


Pssm-ID: 237413 [Multi-domain]  Cd Length: 727  Bit Score: 64.78  E-value: 2.02e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  127 INLRNLGSQRTLTLIDGRRVVSNshgsNAVSLST------------IPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQ 194
Cdd:PRK13528    97 IDIRGMGPENTLILIDGVPVTSR----NSVRYSWrgerdtrgdtnwVPPEMVERIEVIRGPAAARYGSGAAGGVVNIITK 172


                   .
gi 2567559073  195 Q 195
Cdd:PRK13528   173 R 173
PRK13513 PRK13513
ligand-gated channel protein;
125-206 2.18e-10

ligand-gated channel protein;


Pssm-ID: 184104 [Multi-domain]  Cd Length: 659  Bit Score: 64.79  E-value: 2.18e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  125 STINLRNLGSQRTLTLIDGRRVVS-----NSHGSNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEG 199
Cdd:PRK13513    91 SDISIRGMAAKYTLILVDGKRVDTrstrpNSDGSGIEQGWLPPLAAIERIEVVRGPMSSLYGSDAMGGVINIITRKVQKE 170


                   ....*..
gi 2567559073  200 FAFKARG 206
Cdd:PRK13513   171 WHGSLRA 177
PRK13524 PRK13524
FepA family TonB-dependent siderophore receptor;
127-195 3.04e-10

FepA family TonB-dependent siderophore receptor;


Pssm-ID: 237410 [Multi-domain]  Cd Length: 744  Bit Score: 64.28  E-value: 3.04e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  127 INLRNLGSQRTLTLIDGRRVVSNshgsNAVSL------------STIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQ 194
Cdd:PRK13524    99 IDIRGMGPENTLILIDGKPVSSR----NSVRYgwrgerdtrgdtNWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITK 174


                   .
gi 2567559073  195 Q 195
Cdd:PRK13524   175 K 175
PRK13484 PRK13484
IreA family TonB-dependent siderophore receptor;
127-194 1.24e-08

IreA family TonB-dependent siderophore receptor;


Pssm-ID: 139605 [Multi-domain]  Cd Length: 682  Bit Score: 58.87  E-value: 1.24e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2567559073  127 INLRNLGSQRTLTLIDGRRVV---SNSHGSNAVSLSTIP-TGMVKKVEVITGGASAAYGSDAIAGVVNIITQ 194
Cdd:PRK13484    88 ISIRGLSGDYTLILVDGRRQSgreSRPNGSGGFEAGFIPpVEAIERIEVIRGPMSSLYGSDAIGGVINIITK 159
TonB-siderophor TIGR01783
TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of ...
 83-321 1.62e-08

TonB-dependent siderophore receptor; This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273805 [Multi-domain]  Cd Length: 651  Bit Score: 58.58  E-value: 1.62e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   83 DNEAIEDTGLGSLAEILIDELPqisesssnTNSQSNITATGLSTINLRNLGSQRTL--TLIDGRRVVSNShgsnavSLST 160
Cdd:TIGR01783   10 TRQELEDQQAGSLSEALQRVPG--------VVVGGSGGTTQFGNITIRGFGLEVDIdnVYLDGVPLLSRG------NLAI 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  161 IPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQDKEGFAFKARGGESVEGG-AKEFTLDLNYGSE----------FAE 229
Cdd:TIGR01783   76 VDPAMVERVEVLRGPASLLYGGSAPGGVINIVTKRPQDEPKGSVTFGAGTRSGyRTAFDLGGPLGADgtfrgrlngaRQD 155

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  230 GRGYVYLSSTY----DKQYGLTYNDRKRAQIQESHSYDDERMCNTML---TEAEPRDGECMRDISQADWRSLSDSIPGGV 302
Cdd:TIGR01783  156 GDSFYDGAGEEtrlgATATDWQLDDRTLLRLGAYYQKERDRGGYGGLpasGGTSGRDLSSDRYLGTSSNRNYDDREYLSY 235

                          250
                   ....*....|....*....
gi 2567559073  303 FHEGSGGVGGFWYDGQTLR 321
Cdd:TIGR01783  236 GLSLEYQFNDVWTGKQNLR 254
TonB-hemlactrns TIGR01786
TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model ...
 125-193 2.99e-08

TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins]


Pssm-ID: 273808 [Multi-domain]  Cd Length: 715  Bit Score: 57.81  E-value: 2.99e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2567559073  125 STINLRNLGSQRTLTLIDGRR--VVSNSHGSNAVSLSTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIIT 193
Cdd:TIGR01786   62 QGINIRGLDKNRVAVLVDGIRqnTSYGGQGSTFYAINSIDPELIKSIEIVKGASSSLYGSGALGGVVAFRT 132
PRK13486 PRK13486
TonB-dependent receptor;
122-198 1.27e-07

TonB-dependent receptor;


Pssm-ID: 139606 [Multi-domain]  Cd Length: 696  Bit Score: 55.80  E-value: 1.27e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  122 TGLSTINLRNLGSQRTLTLIDGRRVVSNS----HGSNAVSLSTIPT-GMVKKVEVITGGASAAYGSDAIAGVVNIITQQD 196
Cdd:PRK13486    81 TGGLEISIRGMPASYTLILIDGVRQGGSSdvtpNGFSAMNTGFMPPlAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN 160


                   ..
gi 2567559073  197 KE 198
Cdd:PRK13486   161 AD 162
FhuE COG4773
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion ...
 20-193 3.73e-06

Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism];


Pssm-ID: 443805 [Multi-domain]  Cd Length: 692  Bit Score: 51.05  E-value: 3.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   20 AGSAIAFAPTTFAADAENAIAKSVTQItpaknvkkstadEKITVTGSRLRRDSFTV-----ATPLAT-----------MD 83
Cdd:COG4773      6 AGSGLAAAAAGALAQAAAAAAAEATTL------------PEVTVTGTAEGTGGYTAkssstATKLDTplretpqsvsvVT 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   84 NEAIEDTGLGSLAEILiDELPQISESSSNTNSQSNITATGLSTINlrnlgsqrtlTLIDGRRVvsnshgsNAVSLSTIPT 163
Cdd:COG4773     74 RQLIEDQGATTLDDAL-RNVPGVTVSSYDGGGRDSFSIRGFSIDN----------YLRDGLPL-------GGFGGGQPDT 135

                          170       180       190
                   ....*....|....*....|....*....|
gi 2567559073  164 GMVKKVEVITGGASAAYGSDAIAGVVNIIT 193
Cdd:COG4773    136 ANLERVEVLKGPAGLLYGAGSPGGLVNLVT 165
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
826-1020 1.23e-05

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 49.16  E-value: 1.23e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  826 NVDEISTSGIDLAIEYVHDFDDLGSIKFKSDWThvldWTKTV-QSPSGPVTENYE--GYYDNdiydtQGSASLTWYKEDW 902
Cdd:COG4772    523 NAGETRHQGLELALDYDLLKGGGLGLPLFAAYT----YTDAEfTSDFGPVFAGNRlpYVPRH-----QLTAGLGYEHGGW 593

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  903 RVRWSTKYKGpitvnqgdeeDWLEDMANNDENCAAGnaecvanpealmlnEIGSYITHSLSVSYDIslskGGDLRVFGGV 982
Cdd:COG4772    594 TANLNGRYVS----------EQFTDAANTVADGSFG--------------KIPSYTVLDLSASYDF----GKNLSLFAGV 645

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 2567559073  983 NNIFDNQgdYSLGGRGHFYSGYGSSVGRFLYAGAEITF 1020
Cdd:COG4772    646 NNLFDKR--YIASRAPNYAAGIRPGPPRTVYAGLRLKF 681
FecA COG4772
Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];
43-252 3.72e-04

Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism];


Pssm-ID: 443804 [Multi-domain]  Cd Length: 681  Bit Score: 44.53  E-value: 3.72e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073   43 VTQITPAKNVKKSTADEKITVTGSRLRRDS-FTVATPLATMDNEAIEDTGLGSLAEILIDeLP--QISESssntnsqsni 119
Cdd:COG4772      8 ALLLAAAAAAEAATTLETVVVTGSRAAEARlKDVPGSVSVVDREELENQAATSLREVLRR-VPgvNVQEE---------- 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  120 TATGLST-INLRNLGSQRT---LTLIDGRRVVSNSHGSNAVSLSTIPTGMvKKVEVITGGASAAYGSDAIAGVVNIITQQ 195
Cdd:COG4772     77 DGFGLRPnIGIRGLGPRRSrgiTLLEDGIPIAPAPYGDPAAYYFPDLERM-ERIEVLRGAAALRYGPQTVGGAINFVTRT 155

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 2567559073  196 DKEGFafkarggesveggakEFTLDLNYGSeFAEGRGYVYLSSTYDK-QYGLTYNDRK 252
Cdd:COG4772    156 IPTAF---------------GGELRVTGGS-FGYRRTHASVGGTVGNfGYLVEYSRKR 197
Fiu COG4774
Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];
139-222 8.35e-03

Outer membrane receptor for monomeric catechols [Inorganic ion transport and metabolism];


Pssm-ID: 443806 [Multi-domain]  Cd Length: 639  Bit Score: 39.86  E-value: 8.35e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559073  139 TLIDGRRVVSNShgsnavslsTIPTGMVKKVEVITGGASAAYGSDAIAGVVNIITQQ--DKEGFAFKARGGesvEGGAKE 216
Cdd:COG4774     63 IYVDGLRDPGQY---------RRDTFNLERVEVLKGPASVLYGRGSPGGVINLVTKRptDEPFTEVTLTYG---SDGQRR 130


                   ....*.
gi 2567559073  217 FTLDLN 222
Cdd:COG4774    131 ATLDVN 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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