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Conserved domains on  [gi|2567559085|ref|WP_306461465|]
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NAD(P)/FAD-dependent oxidoreductase [Colwellia ponticola]

Protein Classification

NAD(P)/FAD-dependent oxidoreductase( domain architecture ID 11426424)

NAD(P)/FAD-dependent oxidoreductase catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

EC:  1.-.-.-
Gene Ontology:  GO:0000166|GO:0016491
SCOP:  3000055

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
12-380 1.42e-127

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


:

Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 372.94  E-value: 1.42e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  12 MDNVEVLIVGAGVIGLAIAAKLSQQFN-EVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQA 90
Cdd:COG0579     2 MEMYDVVIIGAGIVGLALARELSRYEDlKVLVLEKEDDVAQESSGNNSGVIHAGLYYTPGSLKARLCVEGNELFYELCRE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  91 RHIPVNKIGKLLVANGEEEQLSLEKIRINALNNGVDDLTWLDQTQLTQLEPSLR--ATAALHSPSTGIIDSHAYMQNLLA 168
Cdd:COG0579    82 LGIPFKRCGKLVVATGEEEVAFLEKLYERGKANGVPGLEILDREELRELEPLLSdeGVAALYSPSTGIVDPGALTRALAE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 169 EAEQNNAMFVAQTKLISATPTNNGFEVRLDsQGEVlsmQCKYLINCTGLHSEAVAKCIK-GLDSAHIPklhwCRGHYFSY 247
Cdd:COG0579   162 NAEANGVELLLNTEVTGIEREGDGWEVTTN-GGTI---RARFVINAAGLYADRLAQMAGiGKDFGIFP----VKGEYLVL 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 248 QG-KSPFKQLIYPIPRDN--GLGIHASLDMGGQLKFGPDTQYIE--------------------HLDYHFPENL------ 298
Cdd:COG0579   234 DKpAELVNAKVYPVPDPGapFLGVHLTRTIDGNLLFGPNAVFVPkkedslldlfeslrfpnfwpMLAKNLLTKYlesvts 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 299 --KEAFIRQISRYFPTLDKNKLQPAYAGIRPKlqgADDPFKDFVIQTSEVHqlnGLINLFGIDSPGLTSSLAIAEYVAEQ 376
Cdd:COG0579   314 lsKEAFLEALRKYVPELPDEDLIPAFAGIRAQ---IIKPDGDFVIEEADDP---GSIHVLGIESPGATSALAIAEHVAEL 387

                  ....
gi 2567559085 377 INKR 380
Cdd:COG0579   388 LPEK 391
 
Name Accession Description Interval E-value
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
12-380 1.42e-127

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 372.94  E-value: 1.42e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  12 MDNVEVLIVGAGVIGLAIAAKLSQQFN-EVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQA 90
Cdd:COG0579     2 MEMYDVVIIGAGIVGLALARELSRYEDlKVLVLEKEDDVAQESSGNNSGVIHAGLYYTPGSLKARLCVEGNELFYELCRE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  91 RHIPVNKIGKLLVANGEEEQLSLEKIRINALNNGVDDLTWLDQTQLTQLEPSLR--ATAALHSPSTGIIDSHAYMQNLLA 168
Cdd:COG0579    82 LGIPFKRCGKLVVATGEEEVAFLEKLYERGKANGVPGLEILDREELRELEPLLSdeGVAALYSPSTGIVDPGALTRALAE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 169 EAEQNNAMFVAQTKLISATPTNNGFEVRLDsQGEVlsmQCKYLINCTGLHSEAVAKCIK-GLDSAHIPklhwCRGHYFSY 247
Cdd:COG0579   162 NAEANGVELLLNTEVTGIEREGDGWEVTTN-GGTI---RARFVINAAGLYADRLAQMAGiGKDFGIFP----VKGEYLVL 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 248 QG-KSPFKQLIYPIPRDN--GLGIHASLDMGGQLKFGPDTQYIE--------------------HLDYHFPENL------ 298
Cdd:COG0579   234 DKpAELVNAKVYPVPDPGapFLGVHLTRTIDGNLLFGPNAVFVPkkedslldlfeslrfpnfwpMLAKNLLTKYlesvts 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 299 --KEAFIRQISRYFPTLDKNKLQPAYAGIRPKlqgADDPFKDFVIQTSEVHqlnGLINLFGIDSPGLTSSLAIAEYVAEQ 376
Cdd:COG0579   314 lsKEAFLEALRKYVPELPDEDLIPAFAGIRAQ---IIKPDGDFVIEEADDP---GSIHVLGIESPGATSALAIAEHVAEL 387

                  ....
gi 2567559085 377 INKR 380
Cdd:COG0579   388 LPEK 391
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
17-377 4.19e-68

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 219.69  E-value: 4.19e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQF--NEVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQARHIP 94
Cdd:PRK11728    5 FVIIGGGIVGLSTAMQLQERYpgARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHGIP 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  95 VNKIGKLLVANGEEEQLSLEKIRINALNNGVdDLTWLDQTQLTQLEPSLRATAALHSPSTGIIDSHAYMQNLLAEAEQNN 174
Cdd:PRK11728   85 YEECGKLLVATSELELERMEALYERARANGI-EVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 175 AMFVAQTKLISATPTNNGFEVRLdSQGEVlsmQCKYLINCTGLHSEAVAKcIKGLDSAH--IPklhwCRGHYFSYQGKSP 252
Cdd:PRK11728  164 GEIRLGAEVTALDEHANGVVVRT-TQGEY---EARTLINCAGLMSDRLAK-MAGLEPDFriVP----FRGEYYRLAPEKN 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 253 F--KQLIYPIPrDNG---LGIHASLDMGGQLKFGP-------------------DTQyiEHLDY---------HFPENLK 299
Cdd:PRK11728  235 QlvNHLIYPVP-DPAfpfLGVHLTRMIDGSVTVGPnavlafkregyrkrdfslrDLL--EILTYpgfwklaqkHWRSGLG 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 300 E--------AFIRQISRYFPTLDKNKLQPAYAGIRPKLQGADDPF-KDFVIQTSE--VHQLNGlinlfgiDSPGLTSSLA 368
Cdd:PRK11728  312 EmknslsksGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLvDDFLFVETPrsLHVCNA-------PSPAATSSLP 384

                  ....*....
gi 2567559085 369 IAEYVAEQI 377
Cdd:PRK11728  385 IGEHIVSKV 393
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
16-376 5.80e-60

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 197.24  E-value: 5.80e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  16 EVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQ--ARHI 93
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEPSELARLALEALDLWEELEEelGIDC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  94 PVNKIGKLLVANGEEEQLSLEKIRINALNNGvdDLTWLDQTQLTQLEPSLRA-TAALHSPSTGIIDSHAYMQNLLAEAEQ 172
Cdd:pfam01266  81 GFRRCGVLVLARDEEEEALEKLLAALRRLGV--PAELLDAEELRELEPLLPGlRGGLFYPDGGHVDPARLLRALARAAEA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 173 NNAMFVAQTKLISATPTNNGFEVRLDsqGEVlsmqcKYLINCTGLHSEAVAKciKGLDsahiPKLHWCRGHYFSYQgKSP 252
Cdd:pfam01266 159 LGVRIIEGTEVTGIEEEGGVWGVVTT--GEA-----DAVVNAAGAWADLLAL--PGLR----LPVRPVRGQVLVLE-PLP 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 253 FKQLIYPIP--RDNGLGIHASLDMGGQLKFGPDTQYIEHLDYHFPENLKEAFIRQISRYFPTLDknKLQPAYAGIRPKLQ 330
Cdd:pfam01266 225 EALLILPVPitVDPGRGVYLRPRADGRLLLGGTDEEDGFDDPTPDPEEIEELLEAARRLFPALA--DIERAWAGLRPLPD 302
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2567559085 331 GaddpfkDFVIQTsevHQLNGLINLFGIDSPGLTSSLAIAEYVAEQ 376
Cdd:pfam01266 303 G------LPIIGR---PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
 
Name Accession Description Interval E-value
LhgO COG0579
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
12-380 1.42e-127

L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];


Pssm-ID: 440344 [Multi-domain]  Cd Length: 418  Bit Score: 372.94  E-value: 1.42e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  12 MDNVEVLIVGAGVIGLAIAAKLSQQFN-EVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQA 90
Cdd:COG0579     2 MEMYDVVIIGAGIVGLALARELSRYEDlKVLVLEKEDDVAQESSGNNSGVIHAGLYYTPGSLKARLCVEGNELFYELCRE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  91 RHIPVNKIGKLLVANGEEEQLSLEKIRINALNNGVDDLTWLDQTQLTQLEPSLR--ATAALHSPSTGIIDSHAYMQNLLA 168
Cdd:COG0579    82 LGIPFKRCGKLVVATGEEEVAFLEKLYERGKANGVPGLEILDREELRELEPLLSdeGVAALYSPSTGIVDPGALTRALAE 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 169 EAEQNNAMFVAQTKLISATPTNNGFEVRLDsQGEVlsmQCKYLINCTGLHSEAVAKCIK-GLDSAHIPklhwCRGHYFSY 247
Cdd:COG0579   162 NAEANGVELLLNTEVTGIEREGDGWEVTTN-GGTI---RARFVINAAGLYADRLAQMAGiGKDFGIFP----VKGEYLVL 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 248 QG-KSPFKQLIYPIPRDN--GLGIHASLDMGGQLKFGPDTQYIE--------------------HLDYHFPENL------ 298
Cdd:COG0579   234 DKpAELVNAKVYPVPDPGapFLGVHLTRTIDGNLLFGPNAVFVPkkedslldlfeslrfpnfwpMLAKNLLTKYlesvts 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 299 --KEAFIRQISRYFPTLDKNKLQPAYAGIRPKlqgADDPFKDFVIQTSEVHqlnGLINLFGIDSPGLTSSLAIAEYVAEQ 376
Cdd:COG0579   314 lsKEAFLEALRKYVPELPDEDLIPAFAGIRAQ---IIKPDGDFVIEEADDP---GSIHVLGIESPGATSALAIAEHVAEL 387

                  ....
gi 2567559085 377 INKR 380
Cdd:COG0579   388 LPEK 391
PRK11728 PRK11728
L-2-hydroxyglutarate oxidase;
17-377 4.19e-68

L-2-hydroxyglutarate oxidase;


Pssm-ID: 183292 [Multi-domain]  Cd Length: 393  Bit Score: 219.69  E-value: 4.19e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQF--NEVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQARHIP 94
Cdd:PRK11728    5 FVIIGGGIVGLSTAMQLQERYpgARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHGIP 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  95 VNKIGKLLVANGEEEQLSLEKIRINALNNGVdDLTWLDQTQLTQLEPSLRATAALHSPSTGIIDSHAYMQNLLAEAEQNN 174
Cdd:PRK11728   85 YEECGKLLVATSELELERMEALYERARANGI-EVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 175 AMFVAQTKLISATPTNNGFEVRLdSQGEVlsmQCKYLINCTGLHSEAVAKcIKGLDSAH--IPklhwCRGHYFSYQGKSP 252
Cdd:PRK11728  164 GEIRLGAEVTALDEHANGVVVRT-TQGEY---EARTLINCAGLMSDRLAK-MAGLEPDFriVP----FRGEYYRLAPEKN 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 253 F--KQLIYPIPrDNG---LGIHASLDMGGQLKFGP-------------------DTQyiEHLDY---------HFPENLK 299
Cdd:PRK11728  235 QlvNHLIYPVP-DPAfpfLGVHLTRMIDGSVTVGPnavlafkregyrkrdfslrDLL--EILTYpgfwklaqkHWRSGLG 311
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 300 E--------AFIRQISRYFPTLDKNKLQPAYAGIRPKLQGADDPF-KDFVIQTSE--VHQLNGlinlfgiDSPGLTSSLA 368
Cdd:PRK11728  312 EmknslsksGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLvDDFLFVETPrsLHVCNA-------PSPAATSSLP 384

                  ....*....
gi 2567559085 369 IAEYVAEQI 377
Cdd:PRK11728  385 IGEHIVSKV 393
DAO pfam01266
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ...
16-376 5.80e-60

FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.


Pssm-ID: 426168 [Multi-domain]  Cd Length: 339  Bit Score: 197.24  E-value: 5.80e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  16 EVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEETSSRNSEVIHAGIYYPQNSLKAMLCVQGKAMLYQYCQ--ARHI 93
Cdd:pfam01266   1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDDPGSGASGRNAGLIHPGLRYLEPSELARLALEALDLWEELEEelGIDC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  94 PVNKIGKLLVANGEEEQLSLEKIRINALNNGvdDLTWLDQTQLTQLEPSLRA-TAALHSPSTGIIDSHAYMQNLLAEAEQ 172
Cdd:pfam01266  81 GFRRCGVLVLARDEEEEALEKLLAALRRLGV--PAELLDAEELRELEPLLPGlRGGLFYPDGGHVDPARLLRALARAAEA 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 173 NNAMFVAQTKLISATPTNNGFEVRLDsqGEVlsmqcKYLINCTGLHSEAVAKciKGLDsahiPKLHWCRGHYFSYQgKSP 252
Cdd:pfam01266 159 LGVRIIEGTEVTGIEEEGGVWGVVTT--GEA-----DAVVNAAGAWADLLAL--PGLR----LPVRPVRGQVLVLE-PLP 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 253 FKQLIYPIP--RDNGLGIHASLDMGGQLKFGPDTQYIEHLDYHFPENLKEAFIRQISRYFPTLDknKLQPAYAGIRPKLQ 330
Cdd:pfam01266 225 EALLILPVPitVDPGRGVYLRPRADGRLLLGGTDEEDGFDDPTPDPEEIEELLEAARRLFPALA--DIERAWAGLRPLPD 302
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2567559085 331 GaddpfkDFVIQTsevHQLNGLINLFGIDSPGLTSSLAIAEYVAEQ 376
Cdd:pfam01266 303 G------LPIIGR---PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
DadA COG0665
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
15-377 1.55e-36

Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];


Pssm-ID: 440429 [Multi-domain]  Cd Length: 364  Bit Score: 136.19  E-value: 1.55e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  15 VEVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNAsFGEETSSRNsevihAGIYYPQNSLKAM-----LCVQGKAMLYQYCQ 89
Cdd:COG0665     3 ADVVVIGGGIAGLSTAYHLARRGLDVTVLERGR-PGSGASGRN-----AGQLRPGLAALADralvrLAREALDLWRELAA 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  90 ARHIPV--NKIGKLLVANGEEEQLSLEKIRINALNNGVDdLTWLDQTQLTQLEPSLRA---TAALHSPSTGIIDSHAYMQ 164
Cdd:COG0665    77 ELGIDCdfRRTGVLYLARTEAELAALRAEAEALRALGLP-VELLDAAELREREPGLGSpdyAGGLYDPDDGHVDPAKLVR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 165 NLLAEAEQNNAMFVAQTKLISATPTNNGFEVRLDSQGEVlsmQCKYLINCTGLHSEAVAKCIkGLDSAHIPklhwCRGHY 244
Cdd:COG0665   156 ALARAARAAGVRIREGTPVTGLEREGGRVTGVRTERGTV---RADAVVLAAGAWSARLLPML-GLRLPLRP----VRGYV 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 245 FSYQ--GKSPFKQLIYpiprdnGLGIHASLDMGGQLKFGPDTQYiEHLDYHFPENLKEAFIRQISRYFPTLDKNKLQPAY 322
Cdd:COG0665   228 LVTEplPDLPLRPVLD------DTGVYLRPTADGRLLVGGTAEP-AGFDRAPTPERLEALLRRLRRLFPALADAEIVRAW 300
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2567559085 323 AGIRPklQGADdpfKDFVIqtSEVHQLNGLINLFGIDSPGLTSSLAIAEYVAEQI 377
Cdd:COG0665   301 AGLRP--MTPD---GLPII--GRLPGAPGLYVATGHGGHGVTLAPAAGRLLADLI 348
UbiH COG0654
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ...
12-219 1.65e-08

2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis


Pssm-ID: 440419 [Multi-domain]  Cd Length: 326  Bit Score: 55.33  E-value: 1.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  12 MDNVEVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEetssrnsevIHAGIYYPQNSLKAMlcvqgKAM-LYQYCQA 90
Cdd:COG0654     1 MMRTDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRP---------DGRGIALSPRSLELL-----RRLgLWDRLLA 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  91 RHIPVNKIGKLLVANGEeeqlslEKIRINALNNGVDDLTWLDQTQLTQLepslrataalhspstgiidshaymqnLLAEA 170
Cdd:COG0654    67 RGAPIRGIRVRDGSDGR------VLARFDAAETGLPAGLVVPRADLERA--------------------------LLEAA 114
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2567559085 171 EQNNAMFVAQTKLISATPTNNGFEVRLDSQGEVlsmQCKYLINCTGLHS 219
Cdd:COG0654   115 RALGVELRFGTEVTGLEQDADGVTVTLADGRTL---RADLVVGADGARS 160
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
17-63 1.08e-06

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 49.68  E-value: 1.08e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEETSSRNSEVIHA 63
Cdd:COG0569    98 VIIIGAGRVGRSLARELEEEGHDVVVIDKDPERVERLAEEDVLVIVG 144
PTZ00383 PTZ00383
malate:quinone oxidoreductase; Provisional
16-380 1.88e-06

malate:quinone oxidoreductase; Provisional


Pssm-ID: 240393 [Multi-domain]  Cd Length: 497  Bit Score: 49.74  E-value: 1.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  16 EVLIVGAGVIGLAIAAKLSQ--QFNEVLVIDKNASFGEETS--SRNSEVIHAG-IYYPQNSLKAMLCVQGKAMLYQYcqA 90
Cdd:PTZ00383   47 DVVIVGGGVTGTALFYTLSKftNLKKIALIERRSDFALVAShgKNNSQTIHCGdIETNYTLEKARKVKRQADMLRNY--L 124
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  91 RHIP-------VNKIGKLLVANGEEEQLSLEKiRINALNNGVDDLTWLDQTQLTQLEP--------SLR--ATAALHSPS 153
Cdd:PTZ00383  125 TKLPpserdsiIFKMQKMVLGVGEKECEFLEK-RYPVFKELFPSMQLLDKKEIHRVEPrvvlknnhTLReePLAALYVPN 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 154 --TGiIDSHAYMQNLLAEAEQNNAM------FVAQTKLISATPTN-NGFEVRLdSQGEVLSmqcKYLINCTGLHSEAVAK 224
Cdd:PTZ00383  204 elTT-VDYQKLSESFVKHARRDALVpgkkisINLNTEVLNIERSNdSLYKIHT-NRGEIRA---RFVVVSACGYSLLFAQ 278
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 225 CIK-GLDSAHIPKlhwCRGHYFSyqgKSPFKQLIYPI--PRDNGLGIHASLD--MGGQLKFGP----------------- 282
Cdd:PTZ00383  279 KMGyGLEYSCLPV---AGSFYFS---GNILNGKVYTVqnPALPFAAVHGDPDiiAKGKTRFGPtalplpllerynmsslp 352
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 283 DTQYIEHLD-------------------------YHFPENLKEAFIRQISRYFPTLDKNKLQ--PAYAGIRPKLqgADDP 335
Cdd:PTZ00383  353 DFLKVWNPDlnllavyfdlfkdstmrkyvlrnflFEVPLLNKYLFLKDARKIVPSLTRKDLRycVGYGGVRPQL--IDKV 430
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*.
gi 2567559085 336 FKDFVIQTSEVHQLNGLInlFGID-SPGLTSSLAIAEYVAEQINKR 380
Cdd:PTZ00383  431 SKKLLLGEGKIDPGKGII--FNITpSPGATTCLGNAESDMREICER 474
PRK00711 PRK00711
D-amino acid dehydrogenase;
16-57 3.61e-06

D-amino acid dehydrogenase;


Pssm-ID: 234819 [Multi-domain]  Cd Length: 416  Bit Score: 48.64  E-value: 3.61e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2567559085  16 EVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEETSSRN 57
Cdd:PRK00711    2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFAN 43
NAD_binding_8 pfam13450
NAD(P)-binding Rossmann-like domain;
19-50 4.65e-05

NAD(P)-binding Rossmann-like domain;


Pssm-ID: 433218 [Multi-domain]  Cd Length: 67  Bit Score: 40.98  E-value: 4.65e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2567559085  19 IVGAGVIGLAIAAKLSQQFNEVLVIDKNASFG 50
Cdd:pfam13450   1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDRLG 32
CzcO COG2072
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ...
12-50 1.18e-04

Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism];


Pssm-ID: 441675 [Multi-domain]  Cd Length: 414  Bit Score: 43.70  E-value: 1.18e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2567559085  12 MDNVEVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFG 50
Cdd:COG2072     4 TEHVDVVVIGAGQAGLAAAYHLRRAGIDFVVLEKADDVG 42
TrkA_N pfam02254
TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include ...
17-63 1.66e-04

TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.


Pssm-ID: 426679 [Multi-domain]  Cd Length: 115  Bit Score: 40.59  E-value: 1.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQfNEVLVIDKNASFGEETSSRNSEVIHA 63
Cdd:pfam02254   1 IIIIGYGRVGRSLAEELSEG-GDVVVIDKDEERVEELREEGVPVVVG 46
mnmC PRK01747
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ...
16-378 4.49e-04

bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;


Pssm-ID: 234978 [Multi-domain]  Cd Length: 662  Bit Score: 42.14  E-value: 4.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  16 EVLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEETSSrNseviHAGIYYPQNSLK-------------------AML 76
Cdd:PRK01747  262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASG-N----RQGALYPLLSKDdnalsrffraaflfarrfyDAL 336
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085  77 CVQGKAMLYQYCqarhipvnkiGKLLVANGEEEQLSLEKIRinALNNGVDDLTWLDQTQLTQLEPSLRATAALHSPSTGI 156
Cdd:PRK01747  337 PAAGVAFDHDWC----------GVLQLAWDEKSAEKIAKML--ALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGW 404
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 157 IDSHAYMQNLLAEAEQnNAMFVAQTKLISATPTNNGFevRLDSQGEVLSmQCKYLINCTGLHSEAVAKCikgldsAHIPk 236
Cdd:PRK01747  405 LCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGW--QLDFAGGTLA-SAPVVVLANGHDAARFAQT------AHLP- 473
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 237 LHWCRG---HYFSYQGKSPFKQ-LIY-----PIPRDNGLGIHASLDMGgqlkfGPDTQY--IEHLdyhfpENLkeafiRQ 305
Cdd:PRK01747  474 LYSVRGqvsHLPTTPALSALKQvLCYdgyltPQPANGTHCIGASYDRD-----DTDTAFreADHQ-----ENL-----ER 538
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2567559085 306 ISRYFPTLDKNK------LQpAYAGIR-------------PKLQGADDPFKDF--VIQTSEVHQLNGLINLFGIDSPGLT 364
Cdd:PRK01747  539 LAECLPQALWAKevdvsaLQ-GRVGFRcasrdrlpmvgnvPDEAATLAEYAALanQQPARDAPRLPGLYVAGALGSRGLC 617
                         410
                  ....*....|....
gi 2567559085 365 SSLAIAEYVAEQIN 378
Cdd:PRK01747  618 SAPLGAELLASQIE 631
trkA PRK09496
Trk system potassium transporter TrkA;
17-47 9.66e-04

Trk system potassium transporter TrkA;


Pssm-ID: 236541 [Multi-domain]  Cd Length: 453  Bit Score: 40.88  E-value: 9.66e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQFNEVLVIDKNA 47
Cdd:PRK09496    3 IIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33
PRK08132 PRK08132
FAD-dependent oxidoreductase; Provisional
17-56 1.41e-03

FAD-dependent oxidoreductase; Provisional


Pssm-ID: 236158 [Multi-domain]  Cd Length: 547  Bit Score: 40.62  E-value: 1.41e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGeeTSSR 56
Cdd:PRK08132   26 VVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS--TGSR 63
PRK08163 PRK08163
3-hydroxybenzoate 6-monooxygenase;
17-75 4.41e-03

3-hydroxybenzoate 6-monooxygenase;


Pssm-ID: 181262 [Multi-domain]  Cd Length: 396  Bit Score: 38.86  E-value: 4.41e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQFNEVLVIDKNASFGEetssrnsevIHAGIYYPQNSLKAM 75
Cdd:PRK08163    7 VLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE---------IGAGIQLGPNAFSAL 56
ApbA pfam02558
Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also ...
17-48 4.47e-03

Ketopantoate reductase PanE/ApbA; This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=> 2-dehydropantoate + NADPH. AbpA catalyzes the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.


Pssm-ID: 426831 [Multi-domain]  Cd Length: 147  Bit Score: 37.21  E-value: 4.47e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2567559085  17 VLIVGAGVIGLAIAAKLSQQFNEVLVIDKNAS 48
Cdd:pfam02558   1 IAILGAGAIGSLLGARLAKAGHDVTLILRGAE 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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