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Conserved domains on  [gi|2580539806|ref|WP_310893456|]
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MULTISPECIES: DUF4382 domain-containing protein [unclassified Haloferax]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4382 pfam14321
Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is ...
 154-261 4.31e-19

Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is typically between 142 and 161 amino acids in length.


:

Pssm-ID: 433865  Cd Length: 149  Bit Score: 83.13  E-value: 4.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2580539806 154 NDTDAAEGESSVTYEVDNATVDLTELQGENASLVGEYDVPEGNYTKVFVHVSDVNG-TLKTGEQVNVKLPSN-----KLQ 227
Cdd:pfam14321  33 GETDGGWITLDEREVDEPQTVDLLSLQGGNATLLGELELPAGTYSQIRLVLGDNNSvVNKDGTEYPLKVPSGqqsglKLD 112

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2580539806 228 LNTDFEVGNGESVDFVFDITAFEAG---GSGKYILKP 261
Cdd:pfam14321 113 GNFDFTVEAGGSYDLVLDFDLRKSIvapGNGKYILKP 149
DUF4198 super family cl44601
Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.
 321-365 7.92e-03

Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.


The actual alignment was detected with superfamily member pfam10670:

Pssm-ID: 463175 [Multi-domain]  Cd Length: 207  Bit Score: 37.33  E-value: 7.92e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2580539806 321 DVSAGENATVVVTRNGTPVENATVTIN----------GETAGTTDADGELGVAIP 365
Cdd:pfam10670 140 DLKAGEEFTFQVLFDGKPLAGAEVEVEyggtgyrdapNDAFVKTDADGVFTFTIP 194
 
Name Accession Description Interval E-value
DUF4382 pfam14321
Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is ...
 154-261 4.31e-19

Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is typically between 142 and 161 amino acids in length.


Pssm-ID: 433865  Cd Length: 149  Bit Score: 83.13  E-value: 4.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2580539806 154 NDTDAAEGESSVTYEVDNATVDLTELQGENASLVGEYDVPEGNYTKVFVHVSDVNG-TLKTGEQVNVKLPSN-----KLQ 227
Cdd:pfam14321  33 GETDGGWITLDEREVDEPQTVDLLSLQGGNATLLGELELPAGTYSQIRLVLGDNNSvVNKDGTEYPLKVPSGqqsglKLD 112

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2580539806 228 LNTDFEVGNGESVDFVFDITAFEAG---GSGKYILKP 261
Cdd:pfam14321 113 GNFDFTVEAGGSYDLVLDFDLRKSIvapGNGKYILKP 149
DUF4198 pfam10670
Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.
 321-365 7.92e-03

Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.


Pssm-ID: 463175 [Multi-domain]  Cd Length: 207  Bit Score: 37.33  E-value: 7.92e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2580539806 321 DVSAGENATVVVTRNGTPVENATVTIN----------GETAGTTDADGELGVAIP 365
Cdd:pfam10670 140 DLKAGEEFTFQVLFDGKPLAGAEVEVEyggtgyrdapNDAFVKTDADGVFTFTIP 194
 
Name Accession Description Interval E-value
DUF4382 pfam14321
Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is ...
 154-261 4.31e-19

Domain of unknown function (DUF4382); This family is found in bacteria and archaea, and is typically between 142 and 161 amino acids in length.


Pssm-ID: 433865  Cd Length: 149  Bit Score: 83.13  E-value: 4.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2580539806 154 NDTDAAEGESSVTYEVDNATVDLTELQGENASLVGEYDVPEGNYTKVFVHVSDVNG-TLKTGEQVNVKLPSN-----KLQ 227
Cdd:pfam14321  33 GETDGGWITLDEREVDEPQTVDLLSLQGGNATLLGELELPAGTYSQIRLVLGDNNSvVNKDGTEYPLKVPSGqqsglKLD 112

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2580539806 228 LNTDFEVGNGESVDFVFDITAFEAG---GSGKYILKP 261
Cdd:pfam14321 113 GNFDFTVEAGGSYDLVLDFDLRKSIvapGNGKYILKP 149
DUF4198 pfam10670
Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.
 321-365 7.92e-03

Domain of unknown function (DUF4198); This family was previously missannotated in Pfam as NikM.


Pssm-ID: 463175 [Multi-domain]  Cd Length: 207  Bit Score: 37.33  E-value: 7.92e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2580539806 321 DVSAGENATVVVTRNGTPVENATVTIN----------GETAGTTDADGELGVAIP 365
Cdd:pfam10670 140 DLKAGEEFTFQVLFDGKPLAGAEVEVEyggtgyrdapNDAFVKTDADGVFTFTIP 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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