NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2661306451|ref|WP_327084636|]
View 

type II CAAX prenyl endopeptidase Rce1 family protein [Nocardiopsis sp. EMB25]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YdiL super family cl47285
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 7-53 7.71e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1266:

Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 34.00  E-value: 7.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 2661306451  7 YHLYFVLGGLAVTVPALVCVWAYQRTGRLTPIILAHTAHNLLGSSLI 53
Cdd:COG1266   51 LHLPNLLGFLPAFLLGLVLGLLYLRTGSLWVPILLHALNNLLALLLL 97
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 7-53 7.71e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 34.00  E-value: 7.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 2661306451  7 YHLYFVLGGLAVTVPALVCVWAYQRTGRLTPIILAHTAHNLLGSSLI 53
Cdd:COG1266   51 LHLPNLLGFLPAFLLGLVLGLLYLRTGSLWVPILLHALNNLLALLLL 97
 
Name Accession Description Interval E-value
YdiL COG1266
Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, ...
 7-53 7.71e-04

Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440877 [Multi-domain]  Cd Length: 97  Bit Score: 34.00  E-value: 7.71e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 2661306451  7 YHLYFVLGGLAVTVPALVCVWAYQRTGRLTPIILAHTAHNLLGSSLI 53
Cdd:COG1266   51 LHLPNLLGFLPAFLLGLVLGLLYLRTGSLWVPILLHALNNLLALLLL 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH