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Conserved domains on  [gi|2666409945|ref|WP_329906246|]
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MULTISPECIES: ATP/GTP-binding protein, partial [Streptomyces]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Srp102 super family cl43652
Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, ...
 1-81 1.87e-27

Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, secretion, and vesicular transport];


The actual alignment was detected with superfamily member COG2229:

Pssm-ID: 441830 [Multi-domain]  Cd Length: 189  Bit Score: 97.97  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2666409945   1 GAVVLVDTRRLADCFPA--VDYFEN--SGLPFVIALNGFDGHQPYTPDEVREALQIGPDTPILTTDARHRADAKSALITL 76
Cdd:COG2229    96 GVVFLADSRRLEDSFNAesLDFFEErlEKLPFVVAVNKRDLPDALSLEELREALDLGPDVPVVEADARDGESVKETLIAL 175


                  ....*
gi 2666409945  77 VEHAL 81
Cdd:COG2229   176 LELVL 180
 
Name Accession Description Interval E-value
Srp102 COG2229
Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, ...
 1-81 1.87e-27

Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441830 [Multi-domain]  Cd Length: 189  Bit Score: 97.97  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2666409945   1 GAVVLVDTRRLADCFPA--VDYFEN--SGLPFVIALNGFDGHQPYTPDEVREALQIGPDTPILTTDARHRADAKSALITL 76
Cdd:COG2229    96 GVVFLADSRRLEDSFNAesLDFFEErlEKLPFVVAVNKRDLPDALSLEELREALDLGPDVPVVEADARDGESVKETLIAL 175


                  ....*
gi 2666409945  77 VEHAL 81
Cdd:COG2229   176 LELVL 180
ATP_bind_1 pfam03029
Conserved hypothetical ATP binding protein; Members of this family are found in a range of ...
 1-83 1.66e-11

Conserved hypothetical ATP binding protein; Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.


Pssm-ID: 397252 [Multi-domain]  Cd Length: 238  Bit Score: 57.38  E-value: 1.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2666409945   1 GAVVLVDTRRLADcfpAVDYFEN----------SGLPFVIALNGFDGHQ-------------------------PYTPDE 45
Cdd:pfam03029 124 GAVYLVDTRRLTD---PTDFFSGllyalsimlrLGLPFVVALNKFDLLSlefalkwftdpedlqlllelddgkyRKLNEA 200

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2666409945  46 VREALQIGPDTPILTTDARHRADAKSALITLVEHALMA 83
Cdd:pfam03029 201 IREALDLFYLVPVFLPDARERGESMEDLLTLIDEALQY 238
 
Name Accession Description Interval E-value
Srp102 COG2229
Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, ...
 1-81 1.87e-27

Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441830 [Multi-domain]  Cd Length: 189  Bit Score: 97.97  E-value: 1.87e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2666409945   1 GAVVLVDTRRLADCFPA--VDYFEN--SGLPFVIALNGFDGHQPYTPDEVREALQIGPDTPILTTDARHRADAKSALITL 76
Cdd:COG2229    96 GVVFLADSRRLEDSFNAesLDFFEErlEKLPFVVAVNKRDLPDALSLEELREALDLGPDVPVVEADARDGESVKETLIAL 175


                  ....*
gi 2666409945  77 VEHAL 81
Cdd:COG2229   176 LELVL 180
ATP_bind_1 pfam03029
Conserved hypothetical ATP binding protein; Members of this family are found in a range of ...
 1-83 1.66e-11

Conserved hypothetical ATP binding protein; Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.


Pssm-ID: 397252 [Multi-domain]  Cd Length: 238  Bit Score: 57.38  E-value: 1.66e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2666409945   1 GAVVLVDTRRLADcfpAVDYFEN----------SGLPFVIALNGFDGHQ-------------------------PYTPDE 45
Cdd:pfam03029 124 GAVYLVDTRRLTD---PTDFFSGllyalsimlrLGLPFVVALNKFDLLSlefalkwftdpedlqlllelddgkyRKLNEA 200

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2666409945  46 VREALQIGPDTPILTTDARHRADAKSALITLVEHALMA 83
Cdd:pfam03029 201 IREALDLFYLVPVFLPDARERGESMEDLLTLIDEALQY 238
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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