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Conserved domains on  [gi|2675848487|ref|WP_332310045|]
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ATP-binding protein [Methanosarcina vacuolata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
IS21_help_AAA super family cl41901
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 12-56 6.17e-16

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


The actual alignment was detected with superfamily member NF038214:

Pssm-ID: 439516  Cd Length: 232  Bit Score: 68.27  E-value: 6.17e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWenvYEFFPN 56
Cdd:NF038214  162 YLPFSREGANLLFELIADRYERGSTIITSNLPFSEW---GEVFGD 203
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 12-56 6.17e-16

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 68.27  E-value: 6.17e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWenvYEFFPN 56
Cdd:NF038214  162 YLPFSREGANLLFELIADRYERGSTIITSNLPFSEW---GEVFGD 203
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
12-50 3.40e-14

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 63.65  E-value: 3.40e-14
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENV 50
Cdd:COG1484   171 YLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEV 209
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 12-51 4.79e-14

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 63.23  E-value: 4.79e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVY 51
Cdd:pfam01695 164 YLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF 203
PRK09183 PRK09183
transposase/IS protein; Provisional
 12-51 7.11e-13

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 60.49  E-value: 7.11e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVY 51
Cdd:PRK09183  175 YLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF 214
 
Name Accession Description Interval E-value
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
 12-56 6.17e-16

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 68.27  E-value: 6.17e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWenvYEFFPN 56
Cdd:NF038214  162 YLPFSREGANLLFELIADRYERGSTIITSNLPFSEW---GEVFGD 203
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
12-50 3.40e-14

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 63.65  E-value: 3.40e-14
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENV 50
Cdd:COG1484   171 YLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEV 209
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
 12-51 4.79e-14

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 63.23  E-value: 4.79e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVY 51
Cdd:pfam01695 164 YLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF 203
PRK09183 PRK09183
transposase/IS protein; Provisional
 12-51 7.11e-13

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 60.49  E-value: 7.11e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVY 51
Cdd:PRK09183  175 YLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTF 214
PRK06526 PRK06526
transposase; Provisional
 12-51 6.20e-11

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 54.87  E-value: 6.20e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVY 51
Cdd:PRK06526  170 YIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVF 209
PRK08181 PRK08181
transposase; Validated
 12-56 7.36e-08

transposase; Validated


Pssm-ID: 136670 [Multi-domain]  Cd Length: 269  Bit Score: 46.46  E-value: 7.36e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2675848487  12 YLPFDKVGAHCLFQLISIRYEKNSMILTSNKSYGEWENVyefFPN 56
Cdd:PRK08181  178 YVTKDQAETSVLFELISARYERRSILITANQPFGEWNRV---FPD 219
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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