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Conserved domains on  [gi|2679273315|ref|WP_333548020|]
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flagellar filament capping protein FliD [Pseudomonas citronellolis]

Protein Classification

flagellar filament capping protein FliD( domain architecture ID 11442561)

flagellar filament capping protein FliD is required for the morphogenesis and elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament

Gene Ontology:  GO:0007155|GO:0009288
PubMed:  27664419

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
9-435 1.21e-87

Flagellar capping protein FliD [Cell motility];


:

Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 274.03  E-value: 1.21e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315   9 VQQMATQLAQYDiQASQTRLNRNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSSsstsNMLVNSATFSAEGYATASVGS 88
Cdd:COG1345    15 TDSLVSQLMAAE-RAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSS----TFNAKKATSSNESAVTATATS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  89 TAVSGSYQFFVKQLAAKDQVALQGLSDGD--LGSGELTIGQG-RDSFRIDMSGITSLSALASAINGAsdNTGVKATLVRS 165
Cdd:COG1345    90 GAAAGSYSIEVTQLAQAQSLASAAFASATttLGTGTLTITVGdGKTVTITIDANDTLADIADAINAA--GAGVTASIVND 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 166 DGAvNLVLTSDESGEDQAITLSSSNAAMQGSI------DARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSLTF 239
Cdd:COG1345   168 GSY-RLVLTSKKTGAANAITVSVSGDGALSALlgfdpaSGMTETQAAQDAKLTVNG---ITITSSSNTFTDAIDGVTLTL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 240 TKVSDpaeAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTASG--SGSTTRGALAGDSAVQAIKSAVNGLIRTSFG 317
Cdd:COG1345   244 KKVTG---GPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTkdEETAKAGALLGDSTLRSLQSQLRSALSSPVS 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 318 GV----NLIGYGVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDKGN---LIDSLSSALKTYTSSTsGLLTSRVNSLND 390
Cdd:COG1345   321 GGgsykSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGDGKttgIATRLDDLLDSYTGSD-GTITSRTDGLNK 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2679273315 391 KLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSSMFT 435
Cdd:COG1345   400 QLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLT 444
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
9-435 1.21e-87

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 274.03  E-value: 1.21e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315   9 VQQMATQLAQYDiQASQTRLNRNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSSsstsNMLVNSATFSAEGYATASVGS 88
Cdd:COG1345    15 TDSLVSQLMAAE-RAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSS----TFNAKKATSSNESAVTATATS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  89 TAVSGSYQFFVKQLAAKDQVALQGLSDGD--LGSGELTIGQG-RDSFRIDMSGITSLSALASAINGAsdNTGVKATLVRS 165
Cdd:COG1345    90 GAAAGSYSIEVTQLAQAQSLASAAFASATttLGTGTLTITVGdGKTVTITIDANDTLADIADAINAA--GAGVTASIVND 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 166 DGAvNLVLTSDESGEDQAITLSSSNAAMQGSI------DARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSLTF 239
Cdd:COG1345   168 GSY-RLVLTSKKTGAANAITVSVSGDGALSALlgfdpaSGMTETQAAQDAKLTVNG---ITITSSSNTFTDAIDGVTLTL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 240 TKVSDpaeAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTASG--SGSTTRGALAGDSAVQAIKSAVNGLIRTSFG 317
Cdd:COG1345   244 KKVTG---GPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTkdEETAKAGALLGDSTLRSLQSQLRSALSSPVS 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 318 GV----NLIGYGVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDKGN---LIDSLSSALKTYTSSTsGLLTSRVNSLND 390
Cdd:COG1345   321 GGgsykSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGDGKttgIATRLDDLLDSYTGSD-GTITSRTDGLNK 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2679273315 391 KLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSSMFT 435
Cdd:COG1345   400 QLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLT 444
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 206-429 4.07e-41

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 145.90  E-value: 4.07e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 206 AQDAIVYLGGqggIELRNASNTFDKAIDGVSLTFTKVSDPAEAplSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTA- 284
Cdd:pfam07195   1 AQNAEFTVDG---IKVTSSSNTVTDVIDGVTLNLTKTTEGGET--TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSy 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 285 -SGSGSTTRGALAGDSAVQAIKSAVNGLIRTSFGGVNLIG---YGVSADS-SGKLTLDSSKLEKALAQNADGFEQLFSDK 359
Cdd:pfam07195  76 tLDEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSladIGITTDSdYGTLELDEEKLDKALKENPDSVAELFTGD 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2679273315 360 GNLIDS-----LSSALKTYTSSTSGLLTSRVNSLNDKLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQ 429
Cdd:pfam07195 156 GSRVDTgfakrLTDLLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
fliD PRK08032
flagellar capping protein; Reviewed
 23-435 7.28e-41

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 151.38  E-value: 7.28e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  23 ASQTRLN---RNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSssstsNMLVNSATFSAEGYATASVGSTAVSGSYQFFV 99
Cdd:PRK08032   25 AEKKRLTpitNQQSSYTAKLTAYGTLKSALEKFQTANTALNKA-----DLFSSTKVSSSTTAFSATTDSGASAGKYTISV 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 100 KQLAA---------KDQVALQGLSDGDlgsGELTIGQ--GRDSFRIDMS-GITSLSALASAINGAsdNTGVKATLVRS-D 166
Cdd:PRK08032  100 TQLAQaqslttatvSSTKEALGTSDST---RTITITQpgRKEPLEIDLTaGQTSLSGIRDAINKA--EGGVSASIIKVgD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 167 GAVNLVLTSDESGEDQAITLS-SSNAAMQGSID--------ARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSL 237
Cdd:PRK08032  175 GEYRLVLTSKDTGTDNAMTISvEGDSKLNDFLNydsstgsgNMTQSVAAQNAKLTVNG---IAIERQSNTITDAPEGITL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 238 TFTKVSDPAEaplSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLT------ASGSGSTTRGALAGDSAVQAIKSAVNGL 311
Cdd:PRK08032  252 NLKKVTTGNQ---TLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTkytavdAGADQSSSNGALLGDSTLRTIQTQLKSQ 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 312 IRTS-----FGGVNLIGYgVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDKGnliDSLSSALKTYTS-----STSGLL 381
Cdd:PRK08032  329 LANSqsssdFKTLAQIGI-TQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDG---KKTGITTQIATNlkswlSTTGII 404

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2679273315 382 TSRVNSLNDKLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSSMFT 435
Cdd:PRK08032  405 KTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLT 458
 
Name Accession Description Interval E-value
FliD COG1345
Flagellar capping protein FliD [Cell motility];
9-435 1.21e-87

Flagellar capping protein FliD [Cell motility];


Pssm-ID: 440956 [Multi-domain]  Cd Length: 450  Bit Score: 274.03  E-value: 1.21e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315   9 VQQMATQLAQYDiQASQTRLNRNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSSsstsNMLVNSATFSAEGYATASVGS 88
Cdd:COG1345    15 TDSLVSQLMAAE-RAPLTRLTQQQTSLEAQISAYGTLKSALSSLQDALSALKKSS----TFNAKKATSSNESAVTATATS 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  89 TAVSGSYQFFVKQLAAKDQVALQGLSDGD--LGSGELTIGQG-RDSFRIDMSGITSLSALASAINGAsdNTGVKATLVRS 165
Cdd:COG1345    90 GAAAGSYSIEVTQLAQAQSLASAAFASATttLGTGTLTITVGdGKTVTITIDANDTLADIADAINAA--GAGVTASIVND 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 166 DGAvNLVLTSDESGEDQAITLSSSNAAMQGSI------DARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSLTF 239
Cdd:COG1345   168 GSY-RLVLTSKKTGAANAITVSVSGDGALSALlgfdpaSGMTETQAAQDAKLTVNG---ITITSSSNTFTDAIDGVTLTL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 240 TKVSDpaeAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTASG--SGSTTRGALAGDSAVQAIKSAVNGLIRTSFG 317
Cdd:COG1345   244 KKVTG---GPVTLTVSTDTDAIKKAIKDFVDAYNELIDTINSLTKYTkdEETAKAGALLGDSTLRSLQSQLRSALSSPVS 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 318 GV----NLIGYGVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDKGN---LIDSLSSALKTYTSSTsGLLTSRVNSLND 390
Cdd:COG1345   321 GGgsykSLSDIGITTDKDGKLELDETKLDKALAEDPDAVAKLFTGDGKttgIATRLDDLLDSYTGSD-GTITSRTDGLNK 399

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 2679273315 391 KLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSSMFT 435
Cdd:COG1345   400 QLKDLDDQIERLEDRLEAREARYRKQFTALDTAMSQLNSQSSYLT 444
FliD_C pfam07195
Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 206-429 4.07e-41

Flagellar hook-associated protein 2 C-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the C-terminal region of this family of proteins.


Pssm-ID: 429344 [Multi-domain]  Cd Length: 230  Bit Score: 145.90  E-value: 4.07e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 206 AQDAIVYLGGqggIELRNASNTFDKAIDGVSLTFTKVSDPAEAplSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTA- 284
Cdd:pfam07195   1 AQNAEFTVDG---IKVTSSSNTVTDVIDGVTLNLTKTTEGGET--TLSVSTDTDGIKEAIKDFVDAYNELITTINELTSy 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 285 -SGSGSTTRGALAGDSAVQAIKSAVNGLIRTSFGGVNLIG---YGVSADS-SGKLTLDSSKLEKALAQNADGFEQLFSDK 359
Cdd:pfam07195  76 tLDEETKKAGALAGDSTLRSILSQLRSVLSSSVSDGSISSladIGITTDSdYGTLELDEEKLDKALKENPDSVAELFTGD 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2679273315 360 GNLIDS-----LSSALKTYTSSTSGLLTSRVNSLNDKLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQ 429
Cdd:pfam07195 156 GSRVDTgfakrLTDLLKSYVGASNGTIAGRSDSLNKQIKRLDKQIEDLDKRLETLEARLTAQFTAMDTAVSKMNA 230
fliD PRK08032
flagellar capping protein; Reviewed
 23-435 7.28e-41

flagellar capping protein; Reviewed


Pssm-ID: 236141 [Multi-domain]  Cd Length: 462  Bit Score: 151.38  E-value: 7.28e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  23 ASQTRLN---RNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSssstsNMLVNSATFSAEGYATASVGSTAVSGSYQFFV 99
Cdd:PRK08032   25 AEKKRLTpitNQQSSYTAKLTAYGTLKSALEKFQTANTALNKA-----DLFSSTKVSSSTTAFSATTDSGASAGKYTISV 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 100 KQLAA---------KDQVALQGLSDGDlgsGELTIGQ--GRDSFRIDMS-GITSLSALASAINGAsdNTGVKATLVRS-D 166
Cdd:PRK08032  100 TQLAQaqslttatvSSTKEALGTSDST---RTITITQpgRKEPLEIDLTaGQTSLSGIRDAINKA--EGGVSASIIKVgD 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 167 GAVNLVLTSDESGEDQAITLS-SSNAAMQGSID--------ARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSL 237
Cdd:PRK08032  175 GEYRLVLTSKDTGTDNAMTISvEGDSKLNDFLNydsstgsgNMTQSVAAQNAKLTVNG---IAIERQSNTITDAPEGITL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 238 TFTKVSDPAEaplSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLT------ASGSGSTTRGALAGDSAVQAIKSAVNGL 311
Cdd:PRK08032  252 NLKKVTTGNQ---TLTITKDTTKAKEAIKDWVDAYNSLQDTFSSLTkytavdAGADQSSSNGALLGDSTLRTIQTQLKSQ 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 312 IRTS-----FGGVNLIGYgVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDKGnliDSLSSALKTYTS-----STSGLL 381
Cdd:PRK08032  329 LANSqsssdFKTLAQIGI-TQDPSDGKLEIDDDKLTKALKEDPAGVKALFVGDG---KKTGITTQIATNlkswlSTTGII 404

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2679273315 382 TSRVNSLNDKLADIDDQFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSSMFT 435
Cdd:PRK08032  405 KTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLT 458
fliD PRK06798
flagellar hook-associated protein 2;
28-430 3.37e-27

flagellar hook-associated protein 2;


Pssm-ID: 180698 [Multi-domain]  Cd Length: 440  Bit Score: 112.95  E-value: 3.37e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  28 LNRNKTSYNSELSAVTQLK----SALSTFSSAVSGLKSSSSSTSNMlvNSATFSAEGYATASVGSTAVSGSYQFFVKQLA 103
Cdd:PRK06798   35 LEMKKTPYTNQKQSLTSEKllyaSLKKEFSSFLQTFKDLTTFKGNE--KKVTLSQEGYITVQADASAIAGTYNITVENLA 112

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 104 AKDQVALQGLSDGDLGSG-ELTIGQGRDSFRIDMSgiTSLSALASAINgaSDNTGVKA-TLvrsdgAVNLVLTSDESGED 181
Cdd:PRK06798  113 QRHQITSKPVPDIDAKIGvDETIKINGKEIKVTKD--MTYKDLINKIN--SGNYGVSAyTL-----GNKIFFTSTTEGEE 183

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 182 QAITLSSSNAAM-------QGSIDARKQLSSAQDAIVYLGGqggIELRNASNTFDkAIDGVSLTFTKVSDPAEApLSLDI 254
Cdd:PRK06798  184 GSIKFTDGDSGFleaiglvQSSGVAANDITAAENAEYTING---IKGTSATNKIE-TIPGVTINLKKETTEPIK-LTIQD 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 255 GRDKDATSKkLQGFLDAYNTLMSSIGTLTASGsgsttrGALAGDSAVQAIKSAVNGLIRTSFGGVNLIGYGVSADSSGKL 334
Cdd:PRK06798  259 SNVKDAANL-IKKMVDEYNKAVSTVDLFAGKG------GALQGSAIMFSINRAMNNVFTFSQDGNYLFSFGIQVDKEGTM 331

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 335 TLDSSKLEKALAQNADGFEQLFSDKGNLIDSLSSAL------KTYTSSTSGLLTSRVNSLNDKLADIDDQFDDLQTRYNN 408
Cdd:PRK06798  332 KVDEEALKKALKENPDAAKQFFFGINGLGKEMEKSLdkifgdEGIIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVD 411

                         410       420
                  ....*....|....*....|..
gi 2679273315 409 SYARYLKQytnlMQVMNSMDQT 430
Cdd:PRK06798  412 KYQKLEST----LAALDSQLKT 429
PRK12765 PRK12765
flagellar filament capping protein FliD;
42-359 4.28e-24

flagellar filament capping protein FliD;


Pssm-ID: 237194 [Multi-domain]  Cd Length: 595  Bit Score: 104.98  E-value: 4.28e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  42 VTQLKSALSTFSSAVSGLKSSSSSTSNMLVNSATfsaeGYATASVGSTAVSGSYQFFVKQLAAKD-----QVALQGLSDG 116
Cdd:PRK12765   51 LTAIKTLLSNFKTSVSSLADETSYLKRKVSISDN----PPASVTVNSGVNLQSMKINVSQLAQKDvyqskGFANDSSFVN 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 117 DLGSGE--LTIGQGRDSFRIDMSGITSLSALASAINGASDNTGVKATL-VRSDGAVNLVLTSDESGEDQAITLSSSNAAM 193
Cdd:PRK12765  127 ATLTGEtdLTIFSNGKEYTITVDKSTTYRDLADKINEASGGKIQAKILnVGGKNPYRLVLQSKETGADNAISFYAGKKDA 206

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 194 Q-------------------------------GSIDARKQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSLTFTKV 242
Cdd:PRK12765  207 QsdndaenifkslgwdlddtstidpgkdkkgyGIKDASLHIQTAQNAEFTYNG---IKITRSSNTIDDLGVGVTLTLNKT 283

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 243 SDpaeapLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGTLTASGSGSTTRGALAGDSAVQAIKSAVNGLIR------TSF 316
Cdd:PRK12765  284 GS-----INFDIQQDTEGVTKAVEDLVDAYNNLVTNLNAATSYNSETGTKGTFQGVSEITSIRSSILADLFsqvvdgTDE 358

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2679273315 317 GGVNLIGYGVSADSSGKLTLDSSKLEKALAQNADGFEQLFSDK 359
Cdd:PRK12765  359 DGKSLQDFGLSLNSDGTLSFDSSKFEQKVSEDPDSTQSFFSGS 401
fliD PRK08453
flagellar filament capping protein FliD;
120-427 1.49e-19

flagellar filament capping protein FliD;


Pssm-ID: 181432 [Multi-domain]  Cd Length: 673  Bit Score: 91.05  E-value: 1.49e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 120 SGELTIGqgrdSFRIDMSGITSLS--------ALASAING-----ASDNTGVKATLVRSDGAVNLV---LTSDESGEDQA 183
Cdd:PRK08453  332 EGVISIG----GIKLDLSALTKEGntseenadAIAQAINAkaglyAFKNAEGKLVINSKTGMVTIKgedALGKKSLKDLG 407

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 184 IT--LSSSNAAMQGSIDARKQLSSAQDA-IVYlggqGGIELRNASNTFDKAIDGVSLTFTKVSDPaEAPLSLDIGRDKDA 260
Cdd:PRK08453  408 LKagTVQSYEASQETLFMSKNLQKASDAkFTY----NGVSITRPTNEVNDVISGVNITLEQTTEP-NKPAIISVSRDNQA 482

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 261 TSKKLQGFLDAYNTLMSSIGTLTASGSGSTTRGALAGDSAVQAIKSAVNGLIRTSFGGVN----LIGYGVSADSSGKLTL 336
Cdd:PRK08453  483 IIDSLKEFVKAYNELIPKLDEDTRYDADTKIAGIFNGVGDIRSIRSSLNNVFSYSVHTDNgvesLMKYGLSLDEKGVMTL 562

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 337 DSSKLEKALAQNADGFEQLF-----SDKG------------------NLIDSLSSALKTYTSStsglLTSRVNSLNDkla 393
Cdd:PRK08453  563 DEAKLSSALNSDPKATQDFFygsdsKDMGgreihqegifskfnqviaNLIDGGNAKLKIYEDS----LTRDAKSLTK--- 635

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2679273315 394 DIDDQFDDLQTRYN---NSYARYLKQYTNLMQVMNSM 427
Cdd:PRK08453  636 DKENAQELLKTRYDimaERFAAYDSQISKANQKFNSV 672
fliD PRK06664
flagellar hook-associated protein FliD; Validated
 201-430 7.40e-19

flagellar hook-associated protein FliD; Validated


Pssm-ID: 235848 [Multi-domain]  Cd Length: 661  Bit Score: 89.05  E-value: 7.40e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 201 KQLSSAQDAIVYLGGqggIELRNASNTFDKAIDGVSLTFTKVSdpaEAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIG 280
Cdd:PRK06664  385 NAKSEAKDAKIKFDG---VEVERDKNEITDLIPGVTLNLHKAS---EDPVTLKIEPDYEKIKNLIIEFVAAYNEVLAEIN 458

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 281 TLTASGSGSTTR-----------------GALAGDSAVQAIKSAVNGLIRTS--------FGGVNLIGYGVSADSS---- 331
Cdd:PRK06664  459 IVTSNEKSSIIEeltylsdeekeeayknlGLLRGEFTLLRLKSRLKTIISSSyptsddnaFRMLNQIGISTNSVGSsggl 538

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 332 ---GKLTLDSSKLEKALAQNADGFEQLF---SDKGNLIDS-----LSSALKTYTsSTSGLLTSRVNSLNDKLADIDDQFD 400
Cdd:PRK06664  539 iqdGYLELDEKKLDEVLKENPDSVRELFafdSNGDAVMDNgvakmLLEYLSPYT-QAGGIIYNKVKGLDERIADNNKKIE 617

                         250       260       270
                  ....*....|....*....|....*....|
gi 2679273315 401 DlqtrYNNSYARYLKQytnLMQVMNSMDQT 430
Cdd:PRK06664  618 E----YEKKLESKERK---LKGKYLTMDQT 640
fliD PRK08724
flagellar filament capping protein FliD;
25-187 2.96e-17

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 84.15  E-value: 2.96e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  25 QTRLNRNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSSSstsnMLVNSATFSAEGYATASVGSTAVSGSYQFFVKQLAA 104
Cdd:PRK08724   30 QQRIDNERTDIDTSISAYGRLRESLDTMKNLMTNFRQEKA----FAVRTVDTSDEDVVSATATTDAIAGKYAIDVLQLAQ 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 105 KDQVALQGLS-DGDLGSGELTIGQGRDSFRIDMSGITSLSALASAINGASDNTGVKATLVRSDGAVNLVLTSDESGEDQA 183
Cdd:PRK08724  106 SHKVASDVLDeDAKFGPGKLQISLGDKSFTLDVVGNSKLVDIVRGINGAKSNPGVRASIINDVEGPRLILASNVSGKDNQ 185


                  ....
gi 2679273315 184 ITLS 187
Cdd:PRK08724  186 IKIS 189
fliD PRK08724
flagellar filament capping protein FliD;
202-427 7.96e-14

flagellar filament capping protein FliD;


Pssm-ID: 236335 [Multi-domain]  Cd Length: 673  Bit Score: 73.37  E-value: 7.96e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 202 QLSSAQDAIVYLGGQGGIELRNasNTFDKAIDGVSLTFTKVSDPAEAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGT 281
Cdd:PRK08724  434 EVQSAQDSMVVLDGVAQLSSNN--NVIEDAIEGVDLTLKGKTDKNKPPAEIGVEYDRQSVRNDIEQFVAAYNQFYQTSKA 511

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 282 LTASGSGSTTRGALAGDSAVQAIKSAVNGLIRTSF-----GGVNLIGYGVSADSSGKLTLDSSKLEKALAQNADGFEQLF 356
Cdd:PRK08724  512 LSGVDPATGQKGPLAGDSTVRSADSRLKSVFSSSIeqapeNLKSLTEFGITTTRQGTLEINYDMLDRQLNNNFNKLEEFF 591

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 357 SDKGNLIDSLSSALKTYTSSTsGLLTSRVNS-------LNDKLADIDDQFDDLQTRYNNSYARyLKQYTNLMQ-----VM 424
Cdd:PRK08724  592 GGNTGFAKRVEDAIQSMTGVT-GSIRTREKSlreqnyrLNDDQVALDRRMESLEKRTHAKFAA-MQDATGKMQgqlggMM 669


                  ...
gi 2679273315 425 NSM 427
Cdd:PRK08724  670 NAL 672
FliD_N pfam02465
Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 ...
 9-106 8.76e-14

Flagellar hook-associated protein 2 N-terminus; The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria. This alignment covers the N-terminal region of this family of proteins.


Pssm-ID: 460566 [Multi-domain]  Cd Length: 97  Bit Score: 66.82  E-value: 8.76e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315   9 VQQMATQLAQYDiQASQTRLNRNKTSYNSELSAVTQLKSALSTFSSAVSGLKSSSsstsNMLVNSATFSAEGYATASVGS 88
Cdd:pfam02465   5 TDSIVDQLMAAE-RAPLDRLEQQKTTLEWKQSAYGELNSKLSSLQSALKALSSSS----TFNAKKATSSNESVVTATASS 79

                          90
                  ....*....|....*...
gi 2679273315  89 TAVSGSYQFFVKQLAAKD 106
Cdd:pfam02465  80 GAAAGSYSIEVTQLAQAQ 97
fliD PRK07737
flagellar hook-associated protein 2;
68-432 8.22e-11

flagellar hook-associated protein 2;


Pssm-ID: 236082 [Multi-domain]  Cd Length: 501  Bit Score: 63.67  E-value: 8.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315  68 NMLVNSATFSAEGYATASVGSTAVSGSYQFFVKQLAA----KDQVALQGLSDGDlgsGELTI-----GQGR-DSFRIDMS 137
Cdd:PRK07737   69 TYLKKTVTSSNESVVTATASSSAANGSTTMQVTQLATaatwKSSAKTSFYTGAD---QTLTFnvtnpGETTaKTVEISVK 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 138 GITSLSALASAINgaSDNTGVKA----TLVRSDGAVNLVLTSDESGEDQAITLSSSNAAMQ-------GSIDARKQLS-- 204
Cdd:PRK07737  146 QTDTLDDVISKLN--SSDLGVSAfkdkIWNGTEYVETIAITSKATGAGASIQAADGATASFfsqqlgfTNLDADNELTak 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 205 -SAQDAIVYLGGqggIELRNASNTFdkAIDGVSLTFTKVSDpaeAPLSLDIGRDKDATSKKLQGFLDAYNTLMSSIGT-- 281
Cdd:PRK07737  224 tEGQNAQVTING---LQTERTSNTF--TINGVTYTLKNTTA---GTVTLSVATDVDGIFNKIKDFVDKYNELIDKINAkl 295

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 282 ----------LTASGSGSTTR------------GALAGDSAVQA----IKSAVNGLIRTSFGG-VNLIGYGVSADSS--- 331
Cdd:PRK07737  296 keeryrdyppLTDEQKEAMTEkqielweekaksGLLRGDSILSSalskMRMDFYTKVEGIDGGfSQLAQIGITTSSNyld 375

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2679273315 332 -GKLTLDSSKLEKALAQNADGFEQLF---------SDKG---NLIDSLSSALKTYTSST-SGLLTSRVNSLNDKLADIDD 397
Cdd:PRK07737  376 gGKLEIDETKLRQKIKENPDAVYQLFnsggsssnyNEKGiarRLRDTLKETIKSIEQKAgNTTMTNQQFAIGKDLNQIET 455

                         410       420       430
                  ....*....|....*....|....*....|....*
gi 2679273315 398 QFDDLQTRYNNSYARYLKQYTNLMQVMNSMDQTSS 432
Cdd:PRK07737  456 QIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSM 490
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 123-176 1.25e-04

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 39.51  E-value: 1.25e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2679273315 123 LTIGQGRDSF-RIDMSGITSLSALASAINGASDNTGVKATLVRSDGavNLVLTSD 176
Cdd:pfam07196   2 LTINGVGGGGtDISVSAGDSLGDLADAINAVSSKTGVSASIDTDTG--RLVLTST 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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