NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2691154936|ref|WP_335339068.1|]
View 

divergent polysaccharide deacetylase family protein

Protein Classification

divergent polysaccharide deacetylase family protein( domain architecture ID 10789863)

divergent polysaccharide deacetylase family protein similar to Escherichia coli YibQ

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
6-227 2.95e-95

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


:

Pssm-ID: 442108  Cd Length: 334  Bit Score: 282.38  E-value: 2.95e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936   6 AAPSYGNQVAIVIDDIGYH-ERDLELLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKA-LGPGGLTL 83
Cdd:COG2861   111 PAAAAAPKIAIVIDDLGYSlSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKNdPGPGTLLT 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  84 DMRKWQLQTTLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHV 163
Cdd:COG2861   191 GMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVPVARRDV 270
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2691154936 164 FLDNQTQSDALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHLVE 227
Cdd:COG2861   271 FLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARGIELVPVSALLK 334
 
Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
6-227 2.95e-95

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442108  Cd Length: 334  Bit Score: 282.38  E-value: 2.95e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936   6 AAPSYGNQVAIVIDDIGYH-ERDLELLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKA-LGPGGLTL 83
Cdd:COG2861   111 PAAAAAPKIAIVIDDLGYSlSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKNdPGPGTLLT 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  84 DMRKWQLQTTLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHV 163
Cdd:COG2861   191 GMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVPVARRDV 270
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2691154936 164 FLDNQTQSDALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHLVE 227
Cdd:COG2861   271 FLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARGIELVPVSALLK 334
Polysacc_deac_2 pfam04748
Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 ...
16-226 2.14e-90

Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 (personal obs:Yeats C).


Pssm-ID: 428102  Cd Length: 214  Bit Score: 265.55  E-value: 2.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  16 IVIDDIGYHERDLE-LLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKA--LGPGGLTLDMRKWQLQT 92
Cdd:pfam04748   1 IVIDDLGYNLATAEaLLALPPPVTLAILPYAPHSRELAELARAAGHEVLLHLPMEPLSYPKndPGPGALLVGMSPEEIRR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  93 TLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHVFLDNQTQSD 172
Cdd:pfam04748  81 RLEWALARVPGAVGVNNHMGSRFTADERAMRAVLEELKERGLFFLDSRTTAKSVAPKVAKELGVPYAERDVFLDNVQDEA 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2691154936 173 ALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHLV 226
Cdd:pfam04748 161 AIRKQLDKAEAIARKRGSAIAIGHPYPETLEALKEWLPELEARGIELVPVSALL 214
CE4_DAC2 cd10936
Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This ...
13-225 8.22e-82

Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This family contains an uncharacterized protein BH1492 from Bacillus halodurans, an uncharacterized protein ATU2773 from Agrobacterium tumefaciens C58, and other bacterial hypothetical proteins. Although their functions are still unknown, structural superposition and sequence comparison suggest that BH1492 and ATU2773 might be divergently related to the 7-stranded barrel catalytic domain of polysaccharide deacetylases (DACs) from the carbohydrate esterase 4 (CE4) superfamily, which remove N-linked acetyl groups from cell wall polysaccharides. This family is designated as DAC family 2, a divergent DAC family.


Pssm-ID: 200562  Cd Length: 215  Bit Score: 243.66  E-value: 8.22e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  13 QVAIVIDDIGYHERDLE-LLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKALG-PGGLTLDMRKWQL 90
Cdd:cd10936     1 RLAIVIDDLGYDLATAEaLLALPFPVTLAILPYAPHAAELAEAARAAGHEVLLHLPMEPLGYPKNDpPGALLTGMSAEEI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  91 QTTLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHVFLDNQTQ 170
Cdd:cd10936    81 EKRLEAALARVPGAVGVNNHMGSRFTADREAMRQVLEALKERGLFFVDSRTTPKSVAYRVAKELGVPTARRDVFLDNEQD 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2691154936 171 SDALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHL 225
Cdd:cd10936   161 EAAIRRQLDKAAKIARKRGSAIAIGHPRPETLAALKEWLPELEARGIELVPVSAL 215
 
Name Accession Description Interval E-value
YibQ COG2861
Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family ...
6-227 2.95e-95

Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism];


Pssm-ID: 442108  Cd Length: 334  Bit Score: 282.38  E-value: 2.95e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936   6 AAPSYGNQVAIVIDDIGYH-ERDLELLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKA-LGPGGLTL 83
Cdd:COG2861   111 PAAAAAPKIAIVIDDLGYSlSGTRRALALPGPVTLAFLPYAPYSRELAELARAAGHEVLLHLPMEPLSPKNdPGPGTLLT 190
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  84 DMRKWQLQTTLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHV 163
Cdd:COG2861   191 GMSEEEIRRRLRWALARVPGAVGVNNHMGSRFTSDEEAMRPVMEELKKRGLFFLDSRTSPRSVAPKVAKELGVPVARRDV 270
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2691154936 164 FLDNQTQSDALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHLVE 227
Cdd:COG2861   271 FLDNVQDEAAIDKQLAKLEKIARKNGSAIAIGHPHPETLEALKEWLPELEARGIELVPVSALLK 334
Polysacc_deac_2 pfam04748
Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 ...
16-226 2.14e-90

Divergent polysaccharide deacetylase; This family is divergently related to pfam01522 (personal obs:Yeats C).


Pssm-ID: 428102  Cd Length: 214  Bit Score: 265.55  E-value: 2.14e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  16 IVIDDIGYHERDLE-LLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKA--LGPGGLTLDMRKWQLQT 92
Cdd:pfam04748   1 IVIDDLGYNLATAEaLLALPPPVTLAILPYAPHSRELAELARAAGHEVLLHLPMEPLSYPKndPGPGALLVGMSPEEIRR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  93 TLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHVFLDNQTQSD 172
Cdd:pfam04748  81 RLEWALARVPGAVGVNNHMGSRFTADERAMRAVLEELKERGLFFLDSRTTAKSVAPKVAKELGVPYAERDVFLDNVQDEA 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2691154936 173 ALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHLV 226
Cdd:pfam04748 161 AIRKQLDKAEAIARKRGSAIAIGHPYPETLEALKEWLPELEARGIELVPVSALL 214
CE4_DAC2 cd10936
Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This ...
13-225 8.22e-82

Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; This family contains an uncharacterized protein BH1492 from Bacillus halodurans, an uncharacterized protein ATU2773 from Agrobacterium tumefaciens C58, and other bacterial hypothetical proteins. Although their functions are still unknown, structural superposition and sequence comparison suggest that BH1492 and ATU2773 might be divergently related to the 7-stranded barrel catalytic domain of polysaccharide deacetylases (DACs) from the carbohydrate esterase 4 (CE4) superfamily, which remove N-linked acetyl groups from cell wall polysaccharides. This family is designated as DAC family 2, a divergent DAC family.


Pssm-ID: 200562  Cd Length: 215  Bit Score: 243.66  E-value: 8.22e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  13 QVAIVIDDIGYHERDLE-LLDLPGHLSYAILPHTPFSQRFAYQASHKRRELLLHIPMQALEDKALG-PGGLTLDMRKWQL 90
Cdd:cd10936     1 RLAIVIDDLGYDLATAEaLLALPFPVTLAILPYAPHAAELAEAARAAGHEVLLHLPMEPLGYPKNDpPGALLTGMSAEEI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2691154936  91 QTTLGHALATLPQVKGVNNHMGSALTQSVEPMKWTMELLKKRGLYFLDSRTTELSQAQNVANLYGVANVARHVFLDNQTQ 170
Cdd:cd10936    81 EKRLEAALARVPGAVGVNNHMGSRFTADREAMRQVLEALKERGLFFVDSRTTPKSVAYRVAKELGVPTARRDVFLDNEQD 160
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2691154936 171 SDALRRQFEELKSLARQQGYAIGIAHPYPQTRLFLAEALGELANEGIELVPLSHL 225
Cdd:cd10936   161 EAAIRRQLDKAAKIARKRGSAIAIGHPRPETLAALKEWLPELEARGIELVPVSAL 215
 
Blast search parameters
Data Source: Live blast search RID = KJ11ZSSD013
User Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01   Maximum number of hits: 500

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure