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Conserved domains on  [gi|2693050090|ref|WP_335647695|]
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transglycosylase SLT domain-containing protein [Parasphingorhabdus flavimaris]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MltE super family cl43257
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ...
 19-83 1.38e-03

Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG0741:

Pssm-ID: 440504 [Multi-domain]  Cd Length: 244  Bit Score: 39.21  E-value: 1.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2693050090  19 IAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQTWLGLvdekGDEYGLGWAQD 83
Cdd:COG0741   107 IEEAAKKYGVDPALVLALIRQESAFNPNAV-SPAGARGLMQLMPATARRL----GLKLGLGPSPD 166
 
Name Accession Description Interval E-value
MltE COG0741
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ...
 19-83 1.38e-03

Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440504 [Multi-domain]  Cd Length: 244  Bit Score: 39.21  E-value: 1.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2693050090  19 IAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQTWLGLvdekGDEYGLGWAQD 83
Cdd:COG0741   107 IEEAAKKYGVDPALVLALIRQESAFNPNAV-SPAGARGLMQLMPATARRL----GLKLGLGPSPD 166
Slt35-like cd13399
Slt35-like lytic transglycosylase; Lytic transglycosylase similar to Escherichia coli lytic ...
 27-85 3.52e-03

Slt35-like lytic transglycosylase; Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).


Pssm-ID: 381602 [Multi-domain]  Cd Length: 108  Bit Score: 36.13  E-value: 3.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2693050090  27 GVDFQYLMAQAQLESGMRPDAKASTSSATGLYQFVEQTW-LGLVDEKGDEYGLGW-AQDAI 85
Cdd:cd13399     2 GVPPGILAAILGVESGFGPNAGGSPAGAQGIAQFMPSTWkAYGVDGNGDGKADPFnPEDAI 62
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 19-68 6.99e-03

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 35.75  E-value: 6.99e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2693050090  19 IAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQT--WLGL 68
Cdd:pfam01464   1 IIKAAQKYGVDPSLLLAIAQQESGFNPKAV-SKSGAVGLMQIMPSTakRLGL 51
 
Name Accession Description Interval E-value
MltE COG0741
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ...
 19-83 1.38e-03

Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440504 [Multi-domain]  Cd Length: 244  Bit Score: 39.21  E-value: 1.38e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2693050090  19 IAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQTWLGLvdekGDEYGLGWAQD 83
Cdd:COG0741   107 IEEAAKKYGVDPALVLALIRQESAFNPNAV-SPAGARGLMQLMPATARRL----GLKLGLGPSPD 166
Slt35-like cd13399
Slt35-like lytic transglycosylase; Lytic transglycosylase similar to Escherichia coli lytic ...
 27-85 3.52e-03

Slt35-like lytic transglycosylase; Lytic transglycosylase similar to Escherichia coli lytic transglycosylase Slt35 and Pseudomonas aeruginosa Sltb1. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc) as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).


Pssm-ID: 381602 [Multi-domain]  Cd Length: 108  Bit Score: 36.13  E-value: 3.52e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2693050090  27 GVDFQYLMAQAQLESGMRPDAKASTSSATGLYQFVEQTW-LGLVDEKGDEYGLGW-AQDAI 85
Cdd:cd13399     2 GVPPGILAAILGVESGFGPNAGGSPAGAQGIAQFMPSTWkAYGVDGNGDGKADPFnPEDAI 62
MltD-like cd16894
Membrane-bound lytic murein transglycosylase D and similar proteins; Lytic transglycosylases ...
 29-78 6.77e-03

Membrane-bound lytic murein transglycosylase D and similar proteins; Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).


Pssm-ID: 381615 [Multi-domain]  Cd Length: 129  Bit Score: 35.96  E-value: 6.77e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2693050090  29 DFQYLmaqAQLESGMRPDAKaSTSSATGLYQFVEQTwlglvdekGDEYGL 78
Cdd:cd16894     9 ELKYL---ALVESGFNPDAV-SSAGAAGLWQFMPAT--------AREYGL 46
MltF COG4623
Membrane-bound lytic murein transglycosylase MltF [Cell wall/membrane/envelope biogenesis, ...
 18-70 6.86e-03

Membrane-bound lytic murein transglycosylase MltF [Cell wall/membrane/envelope biogenesis, Signal transduction mechanisms];


Pssm-ID: 443662 [Multi-domain]  Cd Length: 421  Bit Score: 37.73  E-value: 6.86e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2693050090  18 VIAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQT--WLGLVD 70
Cdd:COG4623   267 LFEKYAEEYGLDWRLLAALAYQESHWNPRAR-SPTGARGLMQLMPATakELGVDD 320
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 19-68 6.99e-03

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 35.75  E-value: 6.99e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2693050090  19 IAQSAQRTGVDFQYLMAQAQLESGMRPDAKaSTSSATGLYQFVEQT--WLGL 68
Cdd:pfam01464   1 IIKAAQKYGVDPSLLLAIAQQESGFNPKAV-SKSGAVGLMQIMPSTakRLGL 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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