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Conserved domains on  [gi|2711898653|ref|WP_339374524|]
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SUMF1/EgtB/PvdO family nonheme iron enzyme [Nodularia spumigena]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YfmG super family cl43372
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain ...
12-51 1.43e-13

Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1262:

Pssm-ID: 440874 [Multi-domain]  Cd Length: 238  Bit Score: 61.56  E-value: 1.43e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2711898653  12 VLRGGSWLINPDYCRSASRlNYDTRDSRLNGIGFRVVCAV 51
Cdd:COG1262   200 VLRGGSWATPPDHLRSAYR-NFFPPDARWQFVGFRLARDL 238
 
Name Accession Description Interval E-value
YfmG COG1262
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain ...
12-51 1.43e-13

Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440874 [Multi-domain]  Cd Length: 238  Bit Score: 61.56  E-value: 1.43e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2711898653  12 VLRGGSWLINPDYCRSASRlNYDTRDSRLNGIGFRVVCAV 51
Cdd:COG1262   200 VLRGGSWATPPDHLRSAYR-NFFPPDARWQFVGFRLARDL 238
FGE-sulfatase pfam03781
Sulfatase-modifying factor enzyme 1; This domain is found in eukaryotic proteins required for ...
9-48 1.96e-07

Sulfatase-modifying factor enzyme 1; This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.


Pssm-ID: 397722 [Multi-domain]  Cd Length: 259  Bit Score: 45.18  E-value: 1.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2711898653   9 GIAVLRGGSWL--INPDYCRSASRLNYDTRDSRLNGIGFRVV 48
Cdd:pfam03781 217 GYRVVRGGSWAcsVYPSRLRPAFRGNCQTPGTRADDVGFRLV 258
 
Name Accession Description Interval E-value
YfmG COG1262
Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain ...
12-51 1.43e-13

Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440874 [Multi-domain]  Cd Length: 238  Bit Score: 61.56  E-value: 1.43e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2711898653  12 VLRGGSWLINPDYCRSASRlNYDTRDSRLNGIGFRVVCAV 51
Cdd:COG1262   200 VLRGGSWATPPDHLRSAYR-NFFPPDARWQFVGFRLARDL 238
FGE-sulfatase pfam03781
Sulfatase-modifying factor enzyme 1; This domain is found in eukaryotic proteins required for ...
9-48 1.96e-07

Sulfatase-modifying factor enzyme 1; This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.


Pssm-ID: 397722 [Multi-domain]  Cd Length: 259  Bit Score: 45.18  E-value: 1.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2711898653   9 GIAVLRGGSWL--INPDYCRSASRLNYDTRDSRLNGIGFRVV 48
Cdd:pfam03781 217 GYRVVRGGSWAcsVYPSRLRPAFRGNCQTPGTRADDVGFRLV 258
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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