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Conserved domains on  [gi|2714531187|ref|WP_341068805|]
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transglycosylase SLT domain-containing protein [Bacillus sp. FSL R12-0069]

Protein Classification

lysozyme family protein( domain architecture ID 63)

lysozyme family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lyz-like super family cl00222
lysozyme-like domains; This family contains several members, including soluble lytic ...
 47-122 2.04e-06

lysozyme-like domains; This family contains several members, including soluble lytic transglycosylases (SLT), goose egg-white lysozymes (GEWL), hen egg-white lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, chitosanases, and pesticin. Typical members are involved in the hydrolysis of beta-1,4- linked polysaccharides.


The actual alignment was detected with superfamily member pfam01464:

Pssm-ID: 469668 [Multi-domain]  Cd Length: 114  Bit Score: 44.61  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2714531187  47 IIEEAKKVNLPEWIPLTIAEHESRLNPRSVGDNGtSFGLFQL--HRGGGLA-PDHLTDDELKDPRTNAQIA---MPHLMK 120
Cdd:pfam01464   1 IIKAAQKYGVDPSLLLAIAQQESGFNPKAVSKSG-AVGLMQImpSTAKRLGlRVNPGVDDLFDPEKNIKAGtkyLKELYK 79


                  ..
gi 2714531187 121 GY 122
Cdd:pfam01464  80 QY 81
 
Name Accession Description Interval E-value
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 47-122 2.04e-06

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 44.61  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2714531187  47 IIEEAKKVNLPEWIPLTIAEHESRLNPRSVGDNGtSFGLFQL--HRGGGLA-PDHLTDDELKDPRTNAQIA---MPHLMK 120
Cdd:pfam01464   1 IIKAAQKYGVDPSLLLAIAQQESGFNPKAVSKSG-AVGLMQImpSTAKRLGlRVNPGVDDLFDPEKNIKAGtkyLKELYK 79


                  ..
gi 2714531187 121 GY 122
Cdd:pfam01464  80 QY 81
MltE COG0741
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ...
 44-140 5.08e-04

Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440504 [Multi-domain]  Cd Length: 244  Bit Score: 39.21  E-value: 5.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2714531187  44 KQIIIEEAKKVNL-PEWIpLTIAEHESRLNPRSVGDNGTSfGLFQL--------HRGGGLAPdhlTDDELKDPRTNAQIA 114
Cdd:COG0741   104 LPLIEEAAKKYGVdPALV-LALIRQESAFNPNAVSPAGAR-GLMQLmpatarrlGLKLGLGP---SPDDLFDPETNIRAG 178

                          90       100
                  ....*....|....*....|....*.
gi 2714531187 115 MPHLMKGYKRgvQKGLTDFALLKYIA 140
Cdd:COG0741   179 AAYLRELLDR--FDGDLVLALAAYNA 202
 
Name Accession Description Interval E-value
SLT pfam01464
Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found ...
 47-122 2.04e-06

Transglycosylase SLT domain; This family is distantly related to pfam00062. Members are found in phages, type II, type III and type IV secretion systems.


Pssm-ID: 396169 [Multi-domain]  Cd Length: 114  Bit Score: 44.61  E-value: 2.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2714531187  47 IIEEAKKVNLPEWIPLTIAEHESRLNPRSVGDNGtSFGLFQL--HRGGGLA-PDHLTDDELKDPRTNAQIA---MPHLMK 120
Cdd:pfam01464   1 IIKAAQKYGVDPSLLLAIAQQESGFNPKAVSKSG-AVGLMQImpSTAKRLGlRVNPGVDDLFDPEKNIKAGtkyLKELYK 79


                  ..
gi 2714531187 121 GY 122
Cdd:pfam01464  80 QY 81
MltE COG0741
Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin ...
 44-140 5.08e-04

Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440504 [Multi-domain]  Cd Length: 244  Bit Score: 39.21  E-value: 5.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2714531187  44 KQIIIEEAKKVNL-PEWIpLTIAEHESRLNPRSVGDNGTSfGLFQL--------HRGGGLAPdhlTDDELKDPRTNAQIA 114
Cdd:COG0741   104 LPLIEEAAKKYGVdPALV-LALIRQESAFNPNAVSPAGAR-GLMQLmpatarrlGLKLGLGP---SPDDLFDPETNIRAG 178

                          90       100
                  ....*....|....*....|....*.
gi 2714531187 115 MPHLMKGYKRgvQKGLTDFALLKYIA 140
Cdd:COG0741   179 AAYLRELLDR--FDGDLVLALAAYNA 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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