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Conserved domains on  [gi|2729505455|ref|WP_344109806|]
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transposase, partial [Nocardiopsis rosea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS630 super family cl41314
IS630 family transposase;
1-40 6.62e-10

IS630 family transposase;


The actual alignment was detected with superfamily member NF033545:

Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 52.26  E-value: 6.62e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2729505455   1 PRYAPELNPVETMWSQVKTRI-ANRAFRSVEEVERALRSAL 40
Cdd:NF033545  256 PPYSPWLNPIERVWAVLKRRLlRNRAFRSVDELREAIDAFL 296
 
Name Accession Description Interval E-value
transpos_IS630 NF033545
IS630 family transposase;
1-40 6.62e-10

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 52.26  E-value: 6.62e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2729505455   1 PRYAPELNPVETMWSQVKTRI-ANRAFRSVEEVERALRSAL 40
Cdd:NF033545  256 PPYSPWLNPIERVWAVLKRRLlRNRAFRSVDELREAIDAFL 296
COG3335 COG3335
Transposase [Mobilome: prophages, transposons];
1-40 8.42e-09

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442564 [Multi-domain]  Cd Length: 292  Bit Score: 49.09  E-value: 8.42e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2729505455   1 PRYAPELNPVETMWSQVK-TRIANRAFRSVEEVERALRSAL 40
Cdd:COG3335   231 PPYSPDLNPIERLWSKLKaLLRKNRAFRSKDELKAAVRSFL 271
DDE_3 pfam13358
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 1-32 1.10e-06

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


Pssm-ID: 433142 [Multi-domain]  Cd Length: 146  Bit Score: 42.27  E-value: 1.10e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2729505455   1 PRYAPELNPVETMWSQVKTRI-ANRAFRSVEEV 32
Cdd:pfam13358 113 PPYSPELNPIEILWSVLKRELlNNRRFKDLEEL 145
PBP1_ABC_ligand_binding-like cd06341
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ...
 2-50 7.83e-03

type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.


Pssm-ID: 380564 [Multi-domain]  Cd Length: 340  Bit Score: 32.28  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2729505455   2 RYAPELNPVETMWSQVktrianrAFRSVEEVERALRSAlfsgDGCPTRA 50
Cdd:cd06341   264 KYAPELQDPLQQFALS-------GYIAADLFVRGLEAA----GGCPTRA 301
 
Name Accession Description Interval E-value
transpos_IS630 NF033545
IS630 family transposase;
1-40 6.62e-10

IS630 family transposase;


Pssm-ID: 468076 [Multi-domain]  Cd Length: 298  Bit Score: 52.26  E-value: 6.62e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2729505455   1 PRYAPELNPVETMWSQVKTRI-ANRAFRSVEEVERALRSAL 40
Cdd:NF033545  256 PPYSPWLNPIERVWAVLKRRLlRNRAFRSVDELREAIDAFL 296
COG3335 COG3335
Transposase [Mobilome: prophages, transposons];
1-40 8.42e-09

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442564 [Multi-domain]  Cd Length: 292  Bit Score: 49.09  E-value: 8.42e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2729505455   1 PRYAPELNPVETMWSQVK-TRIANRAFRSVEEVERALRSAL 40
Cdd:COG3335   231 PPYSPDLNPIERLWSKLKaLLRKNRAFRSKDELKAAVRSFL 271
DDE_3 pfam13358
DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are ...
 1-32 1.10e-06

DDE superfamily endonuclease; This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


Pssm-ID: 433142 [Multi-domain]  Cd Length: 146  Bit Score: 42.27  E-value: 1.10e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 2729505455   1 PRYAPELNPVETMWSQVKTRI-ANRAFRSVEEV 32
Cdd:pfam13358 113 PPYSPELNPIEILWSVLKRELlNNRRFKDLEEL 145
PBP1_ABC_ligand_binding-like cd06341
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ...
 2-50 7.83e-03

type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.


Pssm-ID: 380564 [Multi-domain]  Cd Length: 340  Bit Score: 32.28  E-value: 7.83e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2729505455   2 RYAPELNPVETMWSQVktrianrAFRSVEEVERALRSAlfsgDGCPTRA 50
Cdd:cd06341   264 KYAPELQDPLQQFALS-------GYIAADLFVRGLEAA----GGCPTRA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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