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Conserved domains on  [gi|2734273757|ref|WP_346487367|]
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transposase, partial [Stenotrophomonas sp. TWI1409]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
1-69 7.61e-14

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 63.79  E-value: 7.61e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734273757   1 ACTGLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCR-RGQPLYDELSKRGHPSTAVFNILAR 69
Cdd:COG3547   256 AYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALRHNpRLKAWYQRLLAEGKPKKVAIVALAR 325
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-69 7.61e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 63.79  E-value: 7.61e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734273757   1 ACTGLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCR-RGQPLYDELSKRGHPSTAVFNILAR 69
Cdd:COG3547   256 AYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALRHNpRLKAWYQRLLAEGKPKKVAIVALAR 325
Transposase_20 pfam02371
Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of ...
 4-45 2.71e-10

Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.


Pssm-ID: 426743 [Multi-domain]  Cd Length: 86  Bit Score: 50.63  E-value: 2.71e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2734273757  4 GLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCRR 45
Cdd:pfam02371 38 GLAPVERSSGGKVRRGRISKRGNRRLRRALYEAALAAIRHNP 79
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 4-58 4.23e-09

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 50.41  E-value: 4.23e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2734273757   4 GLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMG--LKRCRRGQPLYDELSKRGH 58
Cdd:NF033542  257 GLVPRQYSSGGKVRLGRISKRGNRRLRRTLLVAAARavRRRNPASRAFYDRLRAWGR 313
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-69 7.61e-14

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 63.79  E-value: 7.61e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734273757   1 ACTGLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCR-RGQPLYDELSKRGHPSTAVFNILAR 69
Cdd:COG3547   256 AYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALRHNpRLKAWYQRLLAEGKPKKVAIVALAR 325
Transposase_20 pfam02371
Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of ...
 4-45 2.71e-10

Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.


Pssm-ID: 426743 [Multi-domain]  Cd Length: 86  Bit Score: 50.63  E-value: 2.71e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 2734273757  4 GLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMGLKRCRR 45
Cdd:pfam02371 38 GLAPVERSSGGKVRRGRISKRGNRRLRRALYEAALAAIRHNP 79
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 4-58 4.23e-09

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 50.41  E-value: 4.23e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2734273757   4 GLDPRPNESGGRTGRRRLSKQGAPVLRQMLYMAAMG--LKRCRRGQPLYDELSKRGH 58
Cdd:NF033542  257 GLVPRQYSSGGKVRLGRISKRGNRRLRRTLLVAAARavRRRNPASRAFYDRLRAWGR 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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