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Conserved domains on  [gi|2734811898|ref|WP_346715344|]
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transposase, partial [[Pseudomonas] hibiscicola]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
4-70 2.79e-15

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 68.02  E-value: 2.79e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2734811898   4 KWLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVacRGKTDSGDAQVIARY 70
Cdd:COG3547    46 AWLKKLGPPCLVGMEATGGYHHWLARFLAAAGHEVVVVNPRQVKAFRKGR--RAKTDRIDAEAIARA 110
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
4-70 2.79e-15

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 68.02  E-value: 2.79e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2734811898   4 KWLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVacRGKTDSGDAQVIARY 70
Cdd:COG3547    46 AWLKKLGPPCLVGMEATGGYHHWLARFLAAAGHEVVVVNPRQVKAFRKGR--RAKTDRIDAEAIARA 110
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 5-71 7.67e-15

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 64.17  E-value: 7.67e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2734811898   5 WLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVACRGKTDSGDAQVIARYI 71
Cdd:pfam01548  40 KLLASAGEVLVGVEATGHYGALLVAFLLAAGFQVVYVNPLAVKRLRDLYIRGAKTDAKDAFVIADLA 106
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 5-70 1.45e-13

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 63.12  E-value: 1.45e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2734811898   5 WLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVacRGKTDSGDAQVIARY 70
Cdd:NF033542   41 WLAKLAPPCVVVMEATGGYHAWLRELLALGGFPVVLVNPRHVKPFRKGA--RAKTDRIDAEAIAEA 104
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
4-70 2.79e-15

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 68.02  E-value: 2.79e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2734811898   4 KWLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVacRGKTDSGDAQVIARY 70
Cdd:COG3547    46 AWLKKLGPPCLVGMEATGGYHHWLARFLAAAGHEVVVVNPRQVKAFRKGR--RAKTDRIDAEAIARA 110
DEDD_Tnp_IS110 pfam01548
Transposase; Transposase proteins are necessary for efficient DNA transposition. This family ...
 5-71 7.67e-15

Transposase; Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.


Pssm-ID: 460249  Cd Length: 155  Bit Score: 64.17  E-value: 7.67e-15
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2734811898   5 WLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVACRGKTDSGDAQVIARYI 71
Cdd:pfam01548  40 KLLASAGEVLVGVEATGHYGALLVAFLLAAGFQVVYVNPLAVKRLRDLYIRGAKTDAKDAFVIADLA 106
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 5-70 1.45e-13

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 63.12  E-value: 1.45e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2734811898   5 WLSTLPVGSRIGVEATNRYHELVVQAAQKAGHVVFVLNPRDIKHYAKGVacRGKTDSGDAQVIARY 70
Cdd:NF033542   41 WLAKLAPPCVVVMEATGGYHAWLRELLALGGFPVVLVNPRHVKPFRKGA--RAKTDRIDAEAIAEA 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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