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Conserved domains on  [gi|2734849419|ref|WP_346730637|]
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Rieske 2Fe-2S domain-containing protein [Leucobacter allii]

Protein Classification

Rieske (2Fe-2S) protein( domain architecture ID 362)

Rieske (2Fe-2S) protein contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs, similar to chloroplast cytochrome b6f complex Rieske protein subunit which plays essential roles in photosynthetic electron transport, redox sensing, and signal transduction in chloroplasts

Gene Ontology:  GO:0051537|GO:0046872
SCOP:  8094396

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rieske super family cl00938
Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron ...
 61-142 1.09e-31

Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.


The actual alignment was detected with superfamily member cd03477:

Pssm-ID: 445190 [Multi-domain]  Cd Length: 91  Bit Score: 108.16  E-value: 1.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  61 DPATAAALGDGEGRVIRDGVAPVGVAR-VDGAECRVSGVCPHLGGVLRWNPAERSWDCPLHGSRFTARGERLEGPAVTDL 139
Cdd:cd03477     1 DITDIEDLAPGEGGVVNIGGKRLAVYRdEDGVLHTVSATCTHLGCIVHWNDAEKSWDCPCHGSRFSYDGEVIEGPAVSGL 80


                  ...
gi 2734849419 140 EPR 142
Cdd:cd03477    81 KPA 83
 
Name Accession Description Interval E-value
Rieske_YhfW_C cd03477
YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an ...
 61-142 1.09e-31

YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.


Pssm-ID: 239559 [Multi-domain]  Cd Length: 91  Bit Score: 108.16  E-value: 1.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  61 DPATAAALGDGEGRVIRDGVAPVGVAR-VDGAECRVSGVCPHLGGVLRWNPAERSWDCPLHGSRFTARGERLEGPAVTDL 139
Cdd:cd03477     1 DITDIEDLAPGEGGVVNIGGKRLAVYRdEDGVLHTVSATCTHLGCIVHWNDAEKSWDCPCHGSRFSYDGEVIEGPAVSGL 80


                  ...
gi 2734849419 140 EPR 142
Cdd:cd03477    81 KPA 83
QcrA/PetC COG0723
Rieske Fe-S protein [Energy production and conversion];
45-140 2.15e-21

Rieske Fe-S protein [Energy production and conversion];


Pssm-ID: 440487 [Multi-domain]  Cd Length: 118  Bit Score: 82.74  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  45 AVAGRMLGGWAEAELSDPAT--AAALGDGEGRVIRDGVAPVGVAR----VDGAECRVSGVCPHLGGVLRWNPAERSWDCP 118
Cdd:COG0723     1 AAAPVFVSPSAKAKAGAPVEvdLSDLPPGEGKVVEWRGKPVFVVRtpvrGDGEIVAVSAICTHLGCPVTWNADEGGFDCP 80

                          90       100
                  ....*....|....*....|..
gi 2734849419 119 LHGSRFTARGERLEGPAVTDLE 140
Cdd:COG0723    81 CHGSRFDPDGRVLKGPAPRPLP 102
PRK13474 PRK13474
cytochrome b6-f complex iron-sulfur subunit; Provisional
 31-135 1.73e-08

cytochrome b6-f complex iron-sulfur subunit; Provisional


Pssm-ID: 237392 [Multi-domain]  Cd Length: 178  Bit Score: 50.42  E-value: 1.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  31 PSLRGAGDAVGA-----NLAVAGRMLggwAEAELSDPATAAAL-GDGEGRVIRDG--VAPVGVarvdgaecrvSGVCPHL 102
Cdd:PRK13474   44 PSAGGAGGGTTAkdelgNDIPASQFL---ATHPAGDRSLVQGLkGDPTYLVVEEDgtIASYGI----------NAVCTHL 110

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2734849419 103 GGVLRWNPAERSWDCPLHGSRFTARGERLEGPA 135
Cdd:PRK13474  111 GCVVPWNSGENKFQCPCHGSQYDATGKVVRGPA 143
Rieske_proteo TIGR01416
ubiquinol-cytochrome c reductase, iron-sulfur subunit; This model represents the ...
 57-140 5.77e-06

ubiquinol-cytochrome c reductase, iron-sulfur subunit; This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport]


Pssm-ID: 273610 [Multi-domain]  Cd Length: 174  Bit Score: 43.53  E-value: 5.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  57 AELSDPaTAAALGDGEGRVIRDGVAPVGVarvdgaecrVSGVCPHLGGVLRWNPAERS---WDCPLHGSRFTARGERLEG 133
Cdd:TIGR01416  83 GALKDP-NSEAQQPDYARVKRSGKPEWLV---------VIGICTHLGCIPTYGPEEGDkggFFCPCHGSHYDTAGRVRKG 152


                  ....*..
gi 2734849419 134 PAVTDLE 140
Cdd:TIGR01416 153 PAPLNLP 159
Rieske pfam00355
Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines ...
 68-139 1.60e-04

Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilizes the protein.


Pssm-ID: 425632 [Multi-domain]  Cd Length: 89  Bit Score: 38.10  E-value: 1.60e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2734849419  68 LGDGEGRVIRDGVAPVGVARVDGAECR-VSGVCPHLG-----GVLRWNPAERswdCPLHGSRFTARGERLEGPAVTDL 139
Cdd:pfam00355  11 LPEGEPKVVEVGGEPLVVFRDEDGELYaLEDRCPHRGaplseGKVNGGGRLE---CPYHGWRFDGTGKVVKVPAPRPL 85
 
Name Accession Description Interval E-value
Rieske_YhfW_C cd03477
YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an ...
 61-142 1.09e-31

YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.


Pssm-ID: 239559 [Multi-domain]  Cd Length: 91  Bit Score: 108.16  E-value: 1.09e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  61 DPATAAALGDGEGRVIRDGVAPVGVAR-VDGAECRVSGVCPHLGGVLRWNPAERSWDCPLHGSRFTARGERLEGPAVTDL 139
Cdd:cd03477     1 DITDIEDLAPGEGGVVNIGGKRLAVYRdEDGVLHTVSATCTHLGCIVHWNDAEKSWDCPCHGSRFSYDGEVIEGPAVSGL 80


                  ...
gi 2734849419 140 EPR 142
Cdd:cd03477    81 KPA 83
QcrA/PetC COG0723
Rieske Fe-S protein [Energy production and conversion];
45-140 2.15e-21

Rieske Fe-S protein [Energy production and conversion];


Pssm-ID: 440487 [Multi-domain]  Cd Length: 118  Bit Score: 82.74  E-value: 2.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  45 AVAGRMLGGWAEAELSDPAT--AAALGDGEGRVIRDGVAPVGVAR----VDGAECRVSGVCPHLGGVLRWNPAERSWDCP 118
Cdd:COG0723     1 AAAPVFVSPSAKAKAGAPVEvdLSDLPPGEGKVVEWRGKPVFVVRtpvrGDGEIVAVSAICTHLGCPVTWNADEGGFDCP 80

                          90       100
                  ....*....|....*....|..
gi 2734849419 119 LHGSRFTARGERLEGPAVTDLE 140
Cdd:COG0723    81 CHGSRFDPDGRVLKGPAPRPLP 102
Rieske cd03467
Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron ...
 63-139 1.45e-09

Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.


Pssm-ID: 239550 [Multi-domain]  Cd Length: 98  Bit Score: 51.72  E-value: 1.45e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  63 ATAAALGDGEGRVIRDGVAPVGVARVDGAECRV-SGVCPHLGGVLRWNPAERS-WDCPLHGSRFTAR-GERLEGPAVTDL 139
Cdd:cd03467     5 GALSELPPGGGRVVVVGGGPVVVVRREGGEVYAlSNRCTHQGCPLSEGEGEDGcIVCPCHGSRFDLRtGEVVSGPAPRPL 84
Rieske_cytochrome_b6f cd03471
Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske ...
 98-135 7.86e-09

Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.


Pssm-ID: 239553  Cd Length: 126  Bit Score: 50.44  E-value: 7.86e-09
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2734849419  98 VCPHLGGVLRWNPAERSWDCPLHGSRFTARGERLEGPA 135
Cdd:cd03471    54 VCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPA 91
PRK13474 PRK13474
cytochrome b6-f complex iron-sulfur subunit; Provisional
 31-135 1.73e-08

cytochrome b6-f complex iron-sulfur subunit; Provisional


Pssm-ID: 237392 [Multi-domain]  Cd Length: 178  Bit Score: 50.42  E-value: 1.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  31 PSLRGAGDAVGA-----NLAVAGRMLggwAEAELSDPATAAAL-GDGEGRVIRDG--VAPVGVarvdgaecrvSGVCPHL 102
Cdd:PRK13474   44 PSAGGAGGGTTAkdelgNDIPASQFL---ATHPAGDRSLVQGLkGDPTYLVVEEDgtIASYGI----------NAVCTHL 110

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2734849419 103 GGVLRWNPAERSWDCPLHGSRFTARGERLEGPA 135
Cdd:PRK13474  111 GCVVPWNSGENKFQCPCHGSQYDATGKVVRGPA 143
NirD COG2146
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion ...
 63-141 2.31e-07

Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase [Inorganic ion transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441749 [Multi-domain]  Cd Length: 103  Bit Score: 45.99  E-value: 2.31e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  63 ATAAALGDGEGRVIRDGVAPVGVARVDGAECRVSGVCPHLGGVLRWNPAERSW-DCPLHGSRFTAR-GERLEGPAVTDLE 140
Cdd:COG2146     7 CALDDLPEGGGVVVEVGGKQIAVFRTDGEVYAYDNRCPHQGAPLSEGIVDGGVvTCPLHGARFDLRtGECLGGPATEPLK 86


                  .
gi 2734849419 141 P 141
Cdd:COG2146    87 T 87
Rieske_proteo TIGR01416
ubiquinol-cytochrome c reductase, iron-sulfur subunit; This model represents the ...
 57-140 5.77e-06

ubiquinol-cytochrome c reductase, iron-sulfur subunit; This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport]


Pssm-ID: 273610 [Multi-domain]  Cd Length: 174  Bit Score: 43.53  E-value: 5.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  57 AELSDPaTAAALGDGEGRVIRDGVAPVGVarvdgaecrVSGVCPHLGGVLRWNPAERS---WDCPLHGSRFTARGERLEG 133
Cdd:TIGR01416  83 GALKDP-NSEAQQPDYARVKRSGKPEWLV---------VIGICTHLGCIPTYGPEEGDkggFFCPCHGSHYDTAGRVRKG 152


                  ....*..
gi 2734849419 134 PAVTDLE 140
Cdd:TIGR01416 153 PAPLNLP 159
Rieske_cytochrome_bc1 cd03470
Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske ...
 95-140 1.27e-05

Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.


Pssm-ID: 239552  Cd Length: 126  Bit Score: 41.78  E-value: 1.27e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2734849419  95 VSGVCPHLGGVlrwnPAER-----SWDCPLHGSRFTARGERLEGPAVTDLE 140
Cdd:cd03470    65 VIGICTHLGCV----PTYRagdygGFFCPCHGSHYDASGRIRKGPAPLNLE 111
Rieske pfam00355
Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines ...
 68-139 1.60e-04

Rieske [2Fe-2S] domain; The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in this motif form a disulphide bridge, which stabilizes the protein.


Pssm-ID: 425632 [Multi-domain]  Cd Length: 89  Bit Score: 38.10  E-value: 1.60e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2734849419  68 LGDGEGRVIRDGVAPVGVARVDGAECR-VSGVCPHLG-----GVLRWNPAERswdCPLHGSRFTARGERLEGPAVTDL 139
Cdd:pfam00355  11 LPEGEPKVVEVGGEPLVVFRDEDGELYaLEDRCPHRGaplseGKVNGGGRLE---CPYHGWRFDGTGKVVKVPAPRPL 85
Rieske_ArOX_small cd03476
Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron ...
 96-142 3.66e-04

Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.


Pssm-ID: 239558  Cd Length: 126  Bit Score: 38.14  E-value: 3.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2734849419  96 SGVCPHLGGVLRWNPAERSWDCPLHGSRFTAR--GERLEGPAVTDLePR 142
Cdd:cd03476    52 SALCTHMGCPLTYDPSNKTFVCPCHFSQFDPArgGQMVSGQATQNL-PQ 99
Rieske_RO_ferredoxin cd03528
Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the ...
 63-139 1.55e-03

Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.


Pssm-ID: 239604 [Multi-domain]  Cd Length: 98  Bit Score: 35.54  E-value: 1.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2734849419  63 ATAAALGDGEGRVIRDGVAPVGVARVDGAECRVSGVCPH----------LGGVLrwnpaerswDCPLHGSRFTAR-GERL 131
Cdd:cd03528     5 CAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDDLCTHgdaslsegyvEGGVI---------ECPLHGGRFDLRtGKAL 75


                  ....*...
gi 2734849419 132 EGPAVTDL 139
Cdd:cd03528    76 SLPATEPL 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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