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Conserved domains on  [gi|2740891456|ref|WP_349044065|]
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glutaredoxin domain-containing protein [Brucella melitensis]

Protein Classification

glutaredoxin family protein( domain architecture ID 10002164)

glutaredoxin (GRX) family protein similar to GRX, a glutathione dependent reductase that catalyzes the reduction of disulfides in target proteins using an active site dithiol, present in a CXXC motif

CATH:  3.40.30.10
EC:  1.8.-.-
Gene Ontology:  GO:0015035

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GrxC COG0695
Glutaredoxin [Posttranslational modification, protein turnover, chaperones];
14-87 4.84e-11

Glutaredoxin [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440459 [Multi-domain]  Cd Length: 74  Bit Score: 53.28  E-value: 4.84e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFD--QLREYVR 87
Cdd:COG0695   10 CPYCARAKRLLDEKGIPYEEIDVDE---------DPEAREELRERSG--RRTVPVIFIGGEHLGGFDegELDALLA 74
 
Name Accession Description Interval E-value
GrxC COG0695
Glutaredoxin [Posttranslational modification, protein turnover, chaperones];
14-87 4.84e-11

Glutaredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440459 [Multi-domain]  Cd Length: 74  Bit Score: 53.28  E-value: 4.84e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFD--QLREYVR 87
Cdd:COG0695   10 CPYCARAKRLLDEKGIPYEEIDVDE---------DPEAREELRERSG--RRTVPVIFIGGEHLGGFDegELDALLA 74
GRX_GRXb_1_3_like cd03418
Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of ...
13-82 5.18e-10

Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.


Pssm-ID: 239510 [Multi-domain]  Cd Length: 75  Bit Score: 50.66  E-value: 5.18e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2740891456 13 NCAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtRRMTMPQIFHDGKHVGGFDQL 82
Cdd:cd03418    9 NCPYCVRAKALLDKKGVDYEEIDVDG---------DPALREEMINRSG-GRRTVPQIFIGDVHIGGCDDL 68
PRK10638 PRK10638
glutaredoxin 3; Provisional
14-82 1.28e-08

glutaredoxin 3; Provisional


Pssm-ID: 182607 [Multi-domain]  Cd Length: 83  Bit Score: 47.12  E-value: 1.28e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVadsveDGKPVLNEAVIDElealvgTRRMTMPQIFHDGKHVGGFDQL 82
Cdd:PRK10638  12 CPFCHRAKALLNSKGVSFQEIPI-----DGDAAKREEMIKR------SGRTTVPQIFIDAQHIGGCDDL 69
GlrX-dom TIGR02190
Glutaredoxin-family domain; This C-terminal domain with homology to glutaredoxin is fused to ...
14-85 1.49e-08

Glutaredoxin-family domain; This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.


Pssm-ID: 131245 [Multi-domain]  Cd Length: 79  Bit Score: 47.14  E-value: 1.49e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2740891456 14 CAPCLNSKRLLdaKKHPYEFVSVadsvedgkPVLNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFDQLREY 85
Cdd:TIGR02190 18 CPFCAKAKATL--KEKGYDFEEI--------PLGNDARGRSLRAVTG--ATTVPQVFIGGKLIGGSDELEAY 77
Glutaredoxin pfam00462
Glutaredoxin;
14-76 1.84e-06

Glutaredoxin;


Pssm-ID: 425695 [Multi-domain]  Cd Length: 60  Bit Score: 40.95  E-value: 1.84e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHV 76
Cdd:pfam00462  9 CPFCKRAKRLLKSLGVDFEEIDVDE---------DPEIREELKELSG--WPTVPQVFIDGEHI 60
 
Name Accession Description Interval E-value
GrxC COG0695
Glutaredoxin [Posttranslational modification, protein turnover, chaperones];
14-87 4.84e-11

Glutaredoxin [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440459 [Multi-domain]  Cd Length: 74  Bit Score: 53.28  E-value: 4.84e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFD--QLREYVR 87
Cdd:COG0695   10 CPYCARAKRLLDEKGIPYEEIDVDE---------DPEAREELRERSG--RRTVPVIFIGGEHLGGFDegELDALLA 74
GRX_GRXb_1_3_like cd03418
Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of ...
13-82 5.18e-10

Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.


Pssm-ID: 239510 [Multi-domain]  Cd Length: 75  Bit Score: 50.66  E-value: 5.18e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2740891456 13 NCAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtRRMTMPQIFHDGKHVGGFDQL 82
Cdd:cd03418    9 NCPYCVRAKALLDKKGVDYEEIDVDG---------DPALREEMINRSG-GRRTVPQIFIGDVHIGGCDDL 68
GRX_family cd02066
Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins ...
17-87 7.44e-10

Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family.


Pssm-ID: 239017 [Multi-domain]  Cd Length: 72  Bit Score: 50.16  E-value: 7.44e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2740891456 17 CLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGTRrmTMPQIFHDGKHVGGFDQLREYVR 87
Cdd:cd02066   13 CKRAKRLLESLGIEFEEIDILE---------DGELREELKELSGWP--TVPQIFINGEFIGGYDDLKALHE 72
PRK10638 PRK10638
glutaredoxin 3; Provisional
14-82 1.28e-08

glutaredoxin 3; Provisional


Pssm-ID: 182607 [Multi-domain]  Cd Length: 83  Bit Score: 47.12  E-value: 1.28e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVadsveDGKPVLNEAVIDElealvgTRRMTMPQIFHDGKHVGGFDQL 82
Cdd:PRK10638  12 CPFCHRAKALLNSKGVSFQEIPI-----DGDAAKREEMIKR------SGRTTVPQIFIDAQHIGGCDDL 69
GlrX-dom TIGR02190
Glutaredoxin-family domain; This C-terminal domain with homology to glutaredoxin is fused to ...
14-85 1.49e-08

Glutaredoxin-family domain; This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.


Pssm-ID: 131245 [Multi-domain]  Cd Length: 79  Bit Score: 47.14  E-value: 1.49e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2740891456 14 CAPCLNSKRLLdaKKHPYEFVSVadsvedgkPVLNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFDQLREY 85
Cdd:TIGR02190 18 CPFCAKAKATL--KEKGYDFEEI--------PLGNDARGRSLRAVTG--ATTVPQVFIGGKLIGGSDELEAY 77
GRX_bact TIGR02181
Glutaredoxin, GrxC family; Glutaredoxins are thioltransferases (disulfide reductases) which ...
13-82 1.27e-07

Glutaredoxin, GrxC family; Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport]


Pssm-ID: 274017 [Multi-domain]  Cd Length: 79  Bit Score: 44.56  E-value: 1.27e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2740891456 13 NCAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFDQL 82
Cdd:TIGR02181  8 YCPYCTRAKALLSSKGVTFTEIRVDG---------DPALRDEMMQRSG--RRTVPQIFIGDVHVGGCDDL 66
GRX_hybridPRX5 cd03029
Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing ...
14-85 3.65e-07

Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH -> GSH reductase -> GSH -> GRX domain of hybrid -> PRX domain of hybrid -> peroxide substrate.


Pssm-ID: 239327 [Multi-domain]  Cd Length: 72  Bit Score: 43.27  E-value: 3.65e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2740891456 14 CAPCLNSKRLLdaKKHPYEFVSVadsvedgkPVLNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFDQLREY 85
Cdd:cd03029   11 CPFCARAKAAL--QENGISYEEI--------PLGKDITGRSLRAVTG--AMTVPQVFIDGELIGGSDDLEKY 70
Glutaredoxin pfam00462
Glutaredoxin;
14-76 1.84e-06

Glutaredoxin;


Pssm-ID: 425695 [Multi-domain]  Cd Length: 60  Bit Score: 40.95  E-value: 1.84e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHV 76
Cdd:pfam00462  9 CPFCKRAKRLLKSLGVDFEEIDVDE---------DPEIREELKELSG--WPTVPQVFIDGEHI 60
grxA PRK11200
glutaredoxin 1; Provisional
13-88 1.84e-06

glutaredoxin 1; Provisional


Pssm-ID: 183036 [Multi-domain]  Cd Length: 85  Bit Score: 41.94  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2740891456 13 NCAPCLNSKRL---LDAKKHPYEFVSVaDSVEDGkpvlneavID--ELEALVGTRRMTMPQIFHDGKHVGGFDQLREYVR 87
Cdd:PRK11200  10 GCPYCVRAKELaekLSEERDDFDYRYV-DIHAEG--------ISkaDLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVK 80

                 .
gi 2740891456 88 T 88
Cdd:PRK11200  81 E 81
GRX_GRXh_1_2_like cd03419
Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of ...
14-82 5.53e-06

Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3.


Pssm-ID: 239511 [Multi-domain]  Cd Length: 82  Bit Score: 40.60  E-value: 5.53e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2740891456 14 CAPCLNSKRLLDAKKHPYEFVSVaDSVEDGKpvlneAVIDELEALVGTRrmTMPQIFHDGKHVGGFDQL 82
Cdd:cd03419   10 CPYCKRAKSLLKELGVKPAVVEL-DQHEDGS-----EIQDYLQELTGQR--TVPNVFIGGKFIGGCDDL 70
NrdH cd02976
NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active ...
13-80 1.91e-04

NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.


Pssm-ID: 239274 [Multi-domain]  Cd Length: 73  Bit Score: 36.43  E-value: 1.91e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2740891456 13 NCAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELEALVGtrRMTMPQIFHDGKHVGGFD 80
Cdd:cd02976    9 DCPYCKATKRFLDERGIPFEEVDVDE---------DPEALEELKKLNG--YRSVPVVVIGDEHLSGFR 65
ArsC_family cd02977
Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins ...
3-34 5.69e-03

Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.


Pssm-ID: 239275  Cd Length: 105  Bit Score: 32.85  E-value: 5.69e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2740891456   3 KIYGYiPsvyNCAPCLNSKRLLDAKKHPYEFV 34
Cdd:cd02977     2 TIYGN-P---NCSTSRKALAWLEEHGIEYEFI 29
GlrX_YruB TIGR02196
Glutaredoxin-like protein, YruB-family; This glutaredoxin-like protein family contains the ...
1-80 7.15e-03

Glutaredoxin-like protein, YruB-family; This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.


Pssm-ID: 274027 [Multi-domain]  Cd Length: 74  Bit Score: 32.35  E-value: 7.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2740891456  1 MFKIYgyipSVYNCAPCLNSKRLLDAKKHPYEFVSVADsvedgkpvlNEAVIDELeaLVGTRRMTMPQIFHDGKHVGGFD 80
Cdd:TIGR02196  1 KVKVY----TTPWCPPCVKAKEYLTSKGVAFEEIDVEK---------DAAAREEL--LKVYGQRGVPVIVIGHKIVVGFD 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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