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Conserved domains on  [gi|2742932907|ref|WP_349430902|]
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LysM peptidoglycan-binding domain-containing protein, partial [Weissella confusa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06347 super family cl32140
1,4-beta-N-acetylmuramoylhydrolase;
1-210 6.67e-42

1,4-beta-N-acetylmuramoylhydrolase;


The actual alignment was detected with superfamily member PRK06347:

Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 150.23  E-value: 6.67e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   1 GNTNSGSATST-TYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGSQENGSSTNNSGNNTNSSGNAGT 79
Cdd:PRK06347  320 NSSNTGNTSNAkIYTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPST 399

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  80 SNggqTTGAK-YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNAGANTGSNTGNTSGSSSSSS 158
Cdd:PRK06347  400 GT---STNAKvYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTN 476

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2742932907 159 SSSNTasgtkYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK06347  477 TNAKV-----YTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKV 523
 
Name Accession Description Interval E-value
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
1-210 6.67e-42

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 150.23  E-value: 6.67e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   1 GNTNSGSATST-TYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGSQENGSSTNNSGNNTNSSGNAGT 79
Cdd:PRK06347  320 NSSNTGNTSNAkIYTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPST 399

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  80 SNggqTTGAK-YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNAGANTGSNTGNTSGSSSSSS 158
Cdd:PRK06347  400 GT---STNAKvYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTN 476

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2742932907 159 SSSNTasgtkYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK06347  477 TNAKV-----YTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKV 523
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
4-57 4.94e-19

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 80.91  E-value: 4.94e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2742932907   4 NSGSATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGS 57
Cdd:COG1388   103 AAAAPSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 13-55 2.04e-15

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 67.81  E-value: 2.04e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2742932907  13 YTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIK 55
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKIP 43
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 11-54 5.23e-14

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 64.04  E-value: 5.23e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2742932907  11 TTYTVQSGDSVWGISNKFGITMDQLIQWNNIQN-NFIYPGQKLTI 54
Cdd:cd00118     1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLINpDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
12-54 1.49e-12

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 60.15  E-value: 1.49e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 2742932907   12 TYTVQSGDSVWGISNKFGITMDQLIQWNNIQN-NFIYPGQKLTI 54
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVSDLLELNNILDpDNLQVGQKLKI 44
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 171-210 1.16e-05

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 41.32  E-value: 1.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907 171 VKAGDSVWSVSNKYGITMAQLIQWN-NIQN-NFIYPGQQLTV 210
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANpQLSNpNLIYPGMKIKI 42
 
Name Accession Description Interval E-value
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
1-210 6.67e-42

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 150.23  E-value: 6.67e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   1 GNTNSGSATST-TYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGSQENGSSTNNSGNNTNSSGNAGT 79
Cdd:PRK06347  320 NSSNTGNTSNAkIYTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGTSTSKPST 399

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  80 SNggqTTGAK-YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNAGANTGSNTGNTSGSSSSSS 158
Cdd:PRK06347  400 GT---STNAKvYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTN 476

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2742932907 159 SSSNTasgtkYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK06347  477 TNAKV-----YTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKV 523
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
3-210 4.72e-37

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 136.75  E-value: 4.72e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   3 TNSGSATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGSQENGSSTNNSGNNTNSSGNAGTSNg 82
Cdd:PRK06347  398 STGTSTNAKVYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTSNTNTSKPSTNTNTSKPSTNTN- 476

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  83 gqTTGAKYTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNagantgsntgnTSGSSSSSSSSSN 162
Cdd:PRK06347  477 --TNAKVYTVAKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKVSAGSTTN-----------NTNTAKPSTNKPS 543

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2742932907 163 TASGTKYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK06347  544 NSTVKTYTVKKGDSLWAISRQYKTTVDNIKAWNKLTSNMIHVGQKLTI 591
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
77-210 7.23e-27

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 108.24  E-value: 7.23e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  77 AGTSNGGQTTGAK-YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNaganTGSNTGNTSGSSS 155
Cdd:PRK06347  319 SNSSNTGNTSNAKiYTVVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTS----DTNTSKPSTGTST 394

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2742932907 156 SSSSSSNTASGTKYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK06347  395 SKPSTGTSTNAKVYTVVKGDSLWRIANNNKVTIANLKSWNNLKSDFIYPGQKLKV 449
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
4-57 4.94e-19

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 80.91  E-value: 4.94e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2742932907   4 NSGSATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGS 57
Cdd:COG1388   103 AAAAPSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
169-210 1.19e-15

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 72.05  E-value: 1.19e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907 169 YTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:COG1388   112 YTVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKI 153
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 13-55 2.04e-15

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 67.81  E-value: 2.04e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2742932907  13 YTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIK 55
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKIP 43
LysM COG1388
LysM repeat [Cell wall/membrane/envelope biogenesis];
84-134 2.38e-15

LysM repeat [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440998 [Multi-domain]  Cd Length: 156  Bit Score: 71.28  E-value: 2.38e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2742932907  84 QTTGAKYTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNG 134
Cdd:COG1388   106 APSPVTYTVKKGDTLWSIARRYGVSVEELKRWNGLSSDTIRPGQKLKIPAS 156
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 7-129 8.65e-15

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 72.85  E-value: 8.65e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   7 SATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGSQENGSStnnsgnntnssgnagTSNGGQTT 86
Cdd:PRK10783  340 PLNSRSYKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSKLKVGQTLTIGAGSSAQRL---------------ANNSDSIT 404

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2742932907  87 gakYTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQL 129
Cdd:PRK10783  405 ---YRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAKNLQPGDKL 444
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 169-210 3.95e-14

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 64.34  E-value: 3.95e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907 169 YTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKI 42
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 11-54 5.23e-14

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 64.04  E-value: 5.23e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2742932907  11 TTYTVQSGDSVWGISNKFGITMDQLIQWNNIQN-NFIYPGQKLTI 54
Cdd:cd00118     1 KTYTVKPGDTLWSIAKKYGVTVEELAAANPLINpDCIYPGQKLKI 45
LysM pfam01476
LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety ...
 90-131 1.20e-13

LysM domain; The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.


Pssm-ID: 396179 [Multi-domain]  Cd Length: 43  Bit Score: 63.18  E-value: 1.20e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907  90 YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIV 131
Cdd:pfam01476   1 YTVKKGDTLSSIAKRYGITVEQLAELNGLSSPNLYVGQKLKI 42
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 86-209 5.13e-13

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 67.84  E-value: 5.13e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  86 TGAKYTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFVYPGQQLIVSNGGSSNAGANTGSNTGntsgsssssssssntas 165
Cdd:PRK10783  342 NSRSYKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSKLKVGQTLTIGAGSSAQRLANNSDSIT----------------- 404

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2742932907 166 gtkYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLT 209
Cdd:PRK10783  405 ---YRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAKNLQPGDKLT 445
PRK13914 PRK13914
invasion associated endopeptidase;
8-210 9.44e-13

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 67.13  E-value: 9.44e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907   8 ATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTI-KGSQENGSSTNNSGNNTNSSGNAGTSNGGQTT 86
Cdd:PRK13914   25 ASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQVnEVAAAEKTEKSVSATWLNVRSGAGVDNSIITS 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742932907  87 ---GAKYTVQSGDSV-W-KISNDHGITMAQLIEW--NNIKNNFVYPGQQLIVSNGGSSNAGANTGSNTGNTSGSSSSSSS 159
Cdd:PRK13914  105 ikgGTKVTVETTESNgWhKITYNDGKTGFVNGKYltDKVTSTPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAP 184

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2742932907 160 SSNT--------ASGTKYTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK13914  185 KVAEtketpvvdQNATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAI 243
LysM smart00257
Lysin motif;
12-54 1.49e-12

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 60.15  E-value: 1.49e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 2742932907   12 TYTVQSGDSVWGISNKFGITMDQLIQWNNIQN-NFIYPGQKLTI 54
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVSDLLELNNILDpDNLQVGQKLKI 44
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 169-210 4.91e-12

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 59.04  E-value: 4.91e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2742932907 169 YTVKAGDSVWSVSNKYGITMAQLIQWNNIQN-NFIYPGQQLTV 210
Cdd:cd00118     3 YTVKPGDTLWSIAKKYGVTVEELAAANPLINpDCIYPGQKLKI 45
LysM smart00257
Lysin motif;
168-210 6.87e-12

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 58.61  E-value: 6.87e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 2742932907  168 KYTVKAGDSVWSVSNKYGITMAQLIQWNNIQN-NFIYPGQQLTV 210
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVSDLLELNNILDpDNLQVGQKLKI 44
LysM cd00118
Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain ...
 90-131 2.97e-11

Lysin Motif is a small domain involved in binding peptidoglycan; LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.


Pssm-ID: 212030 [Multi-domain]  Cd Length: 45  Bit Score: 56.72  E-value: 2.97e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2742932907  90 YTVQSGDSVWKISNDHGITMAQLIEWNNIKNNFV-YPGQQLIV 131
Cdd:cd00118     3 YTVKPGDTLWSIAKKYGVTVEELAAANPLINPDCiYPGQKLKI 45
LysM smart00257
Lysin motif;
89-131 3.82e-11

Lysin motif;


Pssm-ID: 197609 [Multi-domain]  Cd Length: 44  Bit Score: 56.30  E-value: 3.82e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 2742932907   89 KYTVQSGDSVWKISNDHGITMAQLIEWNNIKN-NFVYPGQQLIV 131
Cdd:smart00257   1 TYTVKKGDTLSSIARRYGISVSDLLELNNILDpDNLQVGQKLKI 44
PRK13914 PRK13914
invasion associated endopeptidase;
10-57 6.02e-09

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 55.58  E-value: 6.02e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2742932907  10 STTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIKGS 57
Cdd:PRK13914  199 ATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSSSSIYVGQKLAIKQT 246
PRK06347 PRK06347
1,4-beta-N-acetylmuramoylhydrolase;
2-55 1.54e-08

1,4-beta-N-acetylmuramoylhydrolase;


Pssm-ID: 180536 [Multi-domain]  Cd Length: 592  Bit Score: 54.70  E-value: 1.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2742932907   2 NTNSGSATST-TYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTIK 55
Cdd:PRK06347  538 STNKPSNSTVkTYTVKKGDSLWAISRQYKTTVDNIKAWNKLTSNMIHVGQKLTIK 592
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 3-54 5.54e-08

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 51.16  E-value: 5.54e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2742932907   3 TNSGSATSTTYTVQSGDSVWGISNKF---GITMDQLIQWN--NIQN-NFIYPGQKLTI 54
Cdd:COG1652   102 AELAPDAPKTYTVKPGDTLWGIAKRFygdPARWPEIAEANrdQIKNpDLIYPGQVLRI 159
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 1-54 6.88e-06

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 46.27  E-value: 6.88e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2742932907   1 GNTNSGSATSTTYTVQSGDSVWGISNKFGITMDQLIQWNNIQNNFIYPGQKLTI 54
Cdd:PRK10783  393 AQRLANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAKNLQPGDKLTL 446
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 171-210 1.16e-05

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 41.32  E-value: 1.16e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907 171 VKAGDSVWSVSNKYGITMAQLIQWN-NIQN-NFIYPGQQLTV 210
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANpQLSNpNLIYPGMKIKI 42
spore_safA TIGR02899
spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found ...
 92-129 2.93e-05

spore coat assembly protein SafA; SafA (YrbB) (SafA) of Bacillus subtilis is a protein found at the interface of the spore cortex and spore coat, and is dependent on SpoVID for its localization. This model is based on the N-terminal LysM (lysin motif) domain (see pfamAM model pfam01476) of SafA and, from several other spore-forming species, the protein with the most similar N-terminal region. However, this set of proteins differs greatly in C-terminal of the LysM domaim; blocks of 12-residue and 13-residue repeats are found in the Bacillus cereus group, tandem LysM domains in Thermoanaerobacter tengcongensis MB4, etc. in which one of which is found in most examples of endospore-forming bacteria. [Cellular processes, Sporulation and germination]


Pssm-ID: 131945 [Multi-domain]  Cd Length: 44  Bit Score: 40.17  E-value: 2.93e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2742932907  92 VQSGDSVWKISNDHGITMAQLIEWN-NIKN-NFVYPGQQL 129
Cdd:TIGR02899   1 VQKGDTLWKIAKKYGVDFDELIQANpQLSNpNLIYPGMKI 40
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 79-131 4.43e-05

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 42.69  E-value: 4.43e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2742932907  79 TSNGGQTTGAKYTVQSGDSVWKISNDH---GITMAQLIEWN--NIKN-NFVYPGQQLIV 131
Cdd:COG1652   101 SAELAPDAPKTYTVKPGDTLWGIAKRFygdPARWPEIAEANrdQIKNpDLIYPGQVLRI 159
mltD PRK10783
membrane-bound lytic murein transglycosylase D; Provisional
 169-210 5.97e-05

membrane-bound lytic murein transglycosylase D; Provisional


Pssm-ID: 182727 [Multi-domain]  Cd Length: 456  Bit Score: 43.57  E-value: 5.97e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2742932907 169 YTVKAGDSVWSVSNKYGITMAQLIQWNNIQNNFIYPGQQLTV 210
Cdd:PRK10783  346 YKVRSGDTLSGIASRLNVSTKDLQQWNNLRGSKLKVGQTLTI 387
XkdP COG1652
Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion ...
 169-210 1.67e-04

Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain [Inorganic ion transport and metabolism];


Pssm-ID: 441258 [Multi-domain]  Cd Length: 163  Bit Score: 41.14  E-value: 1.67e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2742932907 169 YTVKAGDSVWSVSNKY---GITMAQLIQWN--NIQN-NFIYPGQQLTV 210
Cdd:COG1652   112 YTVKPGDTLWGIAKRFygdPARWPEIAEANrdQIKNpDLIYPGQVLRI 159
PRK14125 PRK14125
cell division suppressor protein YneA; Provisional
 12-54 1.23e-03

cell division suppressor protein YneA; Provisional


Pssm-ID: 184523 [Multi-domain]  Cd Length: 103  Bit Score: 37.32  E-value: 1.23e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2742932907  12 TYTVQSGDSVWGISNKF----GITMDQLIQW----NNIQNNFIYPGQKLTI 54
Cdd:PRK14125   38 EITVQEGDTLWALADQYagkhHMAKNEFIEWvedvNNLPSGHIKAGDKLVI 88
PRK14125 PRK14125
cell division suppressor protein YneA; Provisional
 89-131 2.10e-03

cell division suppressor protein YneA; Provisional


Pssm-ID: 184523 [Multi-domain]  Cd Length: 103  Bit Score: 36.55  E-value: 2.10e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2742932907  89 KYTVQSGDSVWKISND----HGITMAQLIEW----NNIKNNFVYPGQQLIV 131
Cdd:PRK14125   38 EITVQEGDTLWALADQyagkHHMAKNEFIEWvedvNNLPSGHIKAGDKLVI 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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