NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2744978721|ref|WP_349822614|]
View 

MULTISPECIES: recombinase RecT, partial [unclassified Coprococcus]

Protein Classification

recombinase family protein( domain architecture ID 374)

recombinase family protein such as recombinase RecT, which binds to single-stranded DNA and promotes the renaturation of complementary single-stranded DNA

Gene Ontology:  GO:0003677|GO:0006310

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RecT super family cl04285
RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and ...
 13-122 3.84e-27

RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.


The actual alignment was detected with superfamily member TIGR00616:

Pssm-ID: 446337  Cd Length: 241  Bit Score: 100.06  E-value: 3.84e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721  13 AQQNLGITEYLTKDAIKNQINKVVGG-KNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPSPQLGHYYMVP 91
Cdd:TIGR00616  23 QVKGADVKGLLSSPSMIKRFEEVLPRhKRATRFTRIALSLIRSEPMLQKCDTMSVISAAMVAATLGLEPGKNLGYAYILP 102

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2744978721  92 FNNTKAGVKEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:TIGR00616 103 YGNKNEKAKNVQFILGYKGYIDLARRSGQYK 133
 
Name Accession Description Interval E-value
rect TIGR00616
recombinase, phage RecT family; All proteins in this family for which functions are known bind ...
 13-122 3.84e-27

recombinase, phage RecT family; All proteins in this family for which functions are known bind ssDNA and are involved in the the pairing of homologous DNA This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). RecT and homologs are found in prophage regions of bacterial genomes. RecT works with a partner protein, RecE. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 129703  Cd Length: 241  Bit Score: 100.06  E-value: 3.84e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721  13 AQQNLGITEYLTKDAIKNQINKVVGG-KNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPSPQLGHYYMVP 91
Cdd:TIGR00616  23 QVKGADVKGLLSSPSMIKRFEEVLPRhKRATRFTRIALSLIRSEPMLQKCDTMSVISAAMVAATLGLEPGKNLGYAYILP 102

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2744978721  92 FNNTKAGVKEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:TIGR00616 103 YGNKNEKAKNVQFILGYKGYIDLARRSGQYK 133
RecT COG3723
Recombinational DNA repair protein RecT [Replication, recombination and repair];
4-122 1.04e-24

Recombinational DNA repair protein RecT [Replication, recombination and repair];


Pssm-ID: 442937  Cd Length: 264  Bit Score: 94.26  E-value: 1.04e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721   4 NNSLVAKSKAQQNLGITEYLTKdaIKNQINKVVG-GKNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPSP 82
Cdd:COG3723     2 SNQLAKKATKKKPDTVKALLKQ--MKKEFELALPkHYSPERFLRSALTALQNTPALAKCDPTSILNALMQAAQLGLEPNA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2744978721  83 qLGHYYMVPFNNTkagvkEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:COG3723    80 -LGQAYLVPYGNT-----EVQFQIGYKGLIDLARRSGQIK 113
recT PRK09846
recombination protein RecT;
3-120 2.81e-20

recombination protein RecT;


Pssm-ID: 236628  Cd Length: 266  Bit Score: 82.81  E-value: 2.81e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721   3 VNNSLVAKSKAQQnlgITEYLTKdaIKNQINKVV-GGKNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPS 81
Cdd:PRK09846    9 QGNRAPAAVKNNT---LADFINK--MKEQFALALpKHMTADRLIRIATTEIRKNPKLAECDTMSFLGAIMQCAQLGLEPG 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2744978721  82 PQLGHYYMVPFNNTKAGV--KEAQFQMGYKGYIQLAIRSGQ 120
Cdd:PRK09846   84 SALGHAYLLPFGNKNEKSgkKNVQLIIGYRGMIDLARRSGQ 124
RecT pfam03837
RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and ...
 43-122 1.02e-15

RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.


Pssm-ID: 397770  Cd Length: 192  Bit Score: 69.30  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721  43 RFISAIVSAYNTNptLQECTNQSILSAALLGESLQLSPSPqlGHYYMVPFnntkaGVKEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:pfam03837   2 RFMRSALTTIKKT--LAKCSPASVLAALMQAAQLGLNPFT--KEAYLVPY-----GGGEAQLQVGYKGFIKLAKRSGQYA 72
 
Name Accession Description Interval E-value
rect TIGR00616
recombinase, phage RecT family; All proteins in this family for which functions are known bind ...
 13-122 3.84e-27

recombinase, phage RecT family; All proteins in this family for which functions are known bind ssDNA and are involved in the the pairing of homologous DNA This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). RecT and homologs are found in prophage regions of bacterial genomes. RecT works with a partner protein, RecE. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 129703  Cd Length: 241  Bit Score: 100.06  E-value: 3.84e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721  13 AQQNLGITEYLTKDAIKNQINKVVGG-KNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPSPQLGHYYMVP 91
Cdd:TIGR00616  23 QVKGADVKGLLSSPSMIKRFEEVLPRhKRATRFTRIALSLIRSEPMLQKCDTMSVISAAMVAATLGLEPGKNLGYAYILP 102

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2744978721  92 FNNTKAGVKEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:TIGR00616 103 YGNKNEKAKNVQFILGYKGYIDLARRSGQYK 133
RecT COG3723
Recombinational DNA repair protein RecT [Replication, recombination and repair];
4-122 1.04e-24

Recombinational DNA repair protein RecT [Replication, recombination and repair];


Pssm-ID: 442937  Cd Length: 264  Bit Score: 94.26  E-value: 1.04e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721   4 NNSLVAKSKAQQNLGITEYLTKdaIKNQINKVVG-GKNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPSP 82
Cdd:COG3723     2 SNQLAKKATKKKPDTVKALLKQ--MKKEFELALPkHYSPERFLRSALTALQNTPALAKCDPTSILNALMQAAQLGLEPNA 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 2744978721  83 qLGHYYMVPFNNTkagvkEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:COG3723    80 -LGQAYLVPYGNT-----EVQFQIGYKGLIDLARRSGQIK 113
recT PRK09846
recombination protein RecT;
3-120 2.81e-20

recombination protein RecT;


Pssm-ID: 236628  Cd Length: 266  Bit Score: 82.81  E-value: 2.81e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721   3 VNNSLVAKSKAQQnlgITEYLTKdaIKNQINKVV-GGKNGQRFISAIVSAYNTNPTLQECTNQSILSAALLGESLQLSPS 81
Cdd:PRK09846    9 QGNRAPAAVKNNT---LADFINK--MKEQFALALpKHMTADRLIRIATTEIRKNPKLAECDTMSFLGAIMQCAQLGLEPG 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2744978721  82 PQLGHYYMVPFNNTKAGV--KEAQFQMGYKGYIQLAIRSGQ 120
Cdd:PRK09846   84 SALGHAYLLPFGNKNEKSgkKNVQLIIGYRGMIDLARRSGQ 124
RecT pfam03837
RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and ...
 43-122 1.02e-15

RecT family; The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.


Pssm-ID: 397770  Cd Length: 192  Bit Score: 69.30  E-value: 1.02e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2744978721  43 RFISAIVSAYNTNptLQECTNQSILSAALLGESLQLSPSPqlGHYYMVPFnntkaGVKEAQFQMGYKGYIQLAIRSGQYK 122
Cdd:pfam03837   2 RFMRSALTTIKKT--LAKCSPASVLAALMQAAQLGLNPFT--KEAYLVPY-----GGGEAQLQVGYKGFIKLAKRSGQYA 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH