NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2745235732|ref|WP_350028685|]
View 

polysaccharide biosynthesis C-terminal domain-containing protein [Weissella paramesenteroides]

Protein Classification

similar to protein CELE_W06F12( domain architecture ID 10630577)

protein similar to protein CELE_W06F12

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Polysacc_synt_C pfam14667
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral ...
 38-149 5.06e-09

Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral membrane region of polysaccharide biosynthesis proteins.


:

Pssm-ID: 434111 [Multi-domain]  Cd Length: 141  Bit Score: 52.19  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745235732  38 NVIGMQFLIPTQRMKQYFYSVTIGAFVNLLLVYPFILILHDIGVVYATIIAEVAVTSYQFYTVRKHLDIQQMLLDSSKIL 117
Cdd:pfam14667  15 STVLTSILQGLGRTKLALIALLIGALVKLILNLLLIPLFGIVGAAIATVISLLVVALLNLYYLRRYLGLRLLLRRLLKPL 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2745235732 118 IAAIIMFMTLLYVNQLLSFSIWHFMLKIVVGV 149
Cdd:pfam14667  95 LAALVMGIVVYLLLLLLGLLLGLALALLLAVL 126
 
Name Accession Description Interval E-value
Polysacc_synt_C pfam14667
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral ...
 38-149 5.06e-09

Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral membrane region of polysaccharide biosynthesis proteins.


Pssm-ID: 434111 [Multi-domain]  Cd Length: 141  Bit Score: 52.19  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745235732  38 NVIGMQFLIPTQRMKQYFYSVTIGAFVNLLLVYPFILILHDIGVVYATIIAEVAVTSYQFYTVRKHLDIQQMLLDSSKIL 117
Cdd:pfam14667  15 STVLTSILQGLGRTKLALIALLIGALVKLILNLLLIPLFGIVGAAIATVISLLVVALLNLYYLRRYLGLRLLLRRLLKPL 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2745235732 118 IAAIIMFMTLLYVNQLLSFSIWHFMLKIVVGV 149
Cdd:pfam14667  95 LAALVMGIVVYLLLLLLGLLLGLALALLLAVL 126
 
Name Accession Description Interval E-value
Polysacc_synt_C pfam14667
Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral ...
 38-149 5.06e-09

Polysaccharide biosynthesis C-terminal domain; This family represents the C-terminal integral membrane region of polysaccharide biosynthesis proteins.


Pssm-ID: 434111 [Multi-domain]  Cd Length: 141  Bit Score: 52.19  E-value: 5.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2745235732  38 NVIGMQFLIPTQRMKQYFYSVTIGAFVNLLLVYPFILILHDIGVVYATIIAEVAVTSYQFYTVRKHLDIQQMLLDSSKIL 117
Cdd:pfam14667  15 STVLTSILQGLGRTKLALIALLIGALVKLILNLLLIPLFGIVGAAIATVISLLVVALLNLYYLRRYLGLRLLLRRLLKPL 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2745235732 118 IAAIIMFMTLLYVNQLLSFSIWHFMLKIVVGV 149
Cdd:pfam14667  95 LAALVMGIVVYLLLLLLGLLLGLALALLLAVL 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH