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Conserved domains on  [gi|2747583652|ref|WP_350669758|]
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NAD-binding protein, partial [Pseudoalteromonas sp. 43-MNA-CIBAN-0464]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
trkA super family cl35844
Trk system potassium transporter TrkA;
1-77 2.54e-23

Trk system potassium transporter TrkA;


The actual alignment was detected with superfamily member PRK09496:

Pssm-ID: 236541 [Multi-domain]  Cd Length: 453  Bit Score: 90.95  E-value: 2.54e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2747583652   1 KHIRAVMNELQKLERSYKKIMIAGGGNIGAGLARSLER-NHSVKLLERSKERAEQLSEMLDNTVVFCGDASDQELLSE 77
Cdd:PRK09496  215 EHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKeGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEE 292
 
Name Accession Description Interval E-value
trkA PRK09496
Trk system potassium transporter TrkA;
1-77 2.54e-23

Trk system potassium transporter TrkA;


Pssm-ID: 236541 [Multi-domain]  Cd Length: 453  Bit Score: 90.95  E-value: 2.54e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2747583652   1 KHIRAVMNELQKLERSYKKIMIAGGGNIGAGLARSLER-NHSVKLLERSKERAEQLSEMLDNTVVFCGDASDQELLSE 77
Cdd:PRK09496  215 EHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKeGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEE 292
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 1-77 6.67e-06

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 41.59  E-value: 6.67e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2747583652   1 KHIRAVMNELQKLERSyKKIMIAGGGNIGAGLARSL-ERNHSVKLLERSKERAEQLSEmlDNTVVFCGDASDQELLSE 77
Cdd:COG0569    80 EALRRRRMERGIKKLK-MHVIIIGAGRVGRSLARELeEEGHDVVVIDKDPERVERLAE--EDVLVIVGDATDEEVLEE 154
TrkA_N pfam02254
TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include ...
 26-77 3.20e-04

TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.


Pssm-ID: 426679 [Multi-domain]  Cd Length: 115  Bit Score: 35.96  E-value: 3.20e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2747583652  26 GNIGAGLARSLERNHSVKLLERSKERAEQLSEmlDNTVVFCGDASDQELLSE 77
Cdd:pfam02254   7 GRVGRSLAEELSEGGDVVVIDKDEERVEELRE--EGVPVVVGDATDEEVLEE 56
 
Name Accession Description Interval E-value
trkA PRK09496
Trk system potassium transporter TrkA;
1-77 2.54e-23

Trk system potassium transporter TrkA;


Pssm-ID: 236541 [Multi-domain]  Cd Length: 453  Bit Score: 90.95  E-value: 2.54e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2747583652   1 KHIRAVMNELQKLERSYKKIMIAGGGNIGAGLARSLER-NHSVKLLERSKERAEQLSEMLDNTVVFCGDASDQELLSE 77
Cdd:PRK09496  215 EHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKeGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEE 292
TrkA COG0569
Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion ...
 1-77 6.67e-06

Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain [Inorganic ion transport and metabolism, Signal transduction mechanisms];


Pssm-ID: 440335 [Multi-domain]  Cd Length: 296  Bit Score: 41.59  E-value: 6.67e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2747583652   1 KHIRAVMNELQKLERSyKKIMIAGGGNIGAGLARSL-ERNHSVKLLERSKERAEQLSEmlDNTVVFCGDASDQELLSE 77
Cdd:COG0569    80 EALRRRRMERGIKKLK-MHVIIIGAGRVGRSLARELeEEGHDVVVIDKDPERVERLAE--EDVLVIVGDATDEEVLEE 154
TrkA_N pfam02254
TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include ...
 26-77 3.20e-04

TrkA-N domain; This domain is found in a wide variety of proteins. These proteins include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.


Pssm-ID: 426679 [Multi-domain]  Cd Length: 115  Bit Score: 35.96  E-value: 3.20e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2747583652  26 GNIGAGLARSLERNHSVKLLERSKERAEQLSEmlDNTVVFCGDASDQELLSE 77
Cdd:pfam02254   7 GRVGRSLAEELSEGGDVVVIDKDEERVEELRE--EGVPVVVGDATDEEVLEE 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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