|
Name |
Accession |
Description |
Interval |
E-value |
| ZnMc super family |
cl00064 |
Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major ... |
196-410 |
8.13e-36 |
|
Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
The actual alignment was detected with superfamily member pfam13583:
Pssm-ID: 469599 Cd Length: 203 Bit Score: 135.44 E-value: 8.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 196 RTMRLAMSVTGEYTQFHGgTVAGALTAINATLTRVNGVFEKDFALHLNLQNYPNVIYTNPATDPYATVVPGAGVpgswNT 275
Cdd:pfam13583 3 RVYRVAVATDCTYSASFG-SVDELRANINATVTTANEVYGRDFNVSLALISDRDVIYTDSSTDSFNADCSGGDL----GN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 276 ELQQTLTANVGNANYDIGHLFGASGGGGNAGCIGCVcldpGGSHPSTGAGKGSGITSPSngipqGDTFDIdfVAHEMGHQ 355
Cdd:pfam13583 78 WRLATLTSWRDSLNYDLAYLTLMTGPSGQNVGVAWV----GALCSSARQNAKASGVARS-----RDEWDI--FAHEIGHT 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 356 LGGNHTFSYQNQGAPVQMEPGSGTTIMAYAG-VANSNLAPPPGTTFDIQPNSDAYF 410
Cdd:pfam13583 147 FGAVHDCSSQGEGLSSSTEDGSGQTIMSYAStASQTAFSPCTIRNINGNPCSQANY 202
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
915-1000 |
3.54e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
:
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 72.53 E-value: 3.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGA-----TYILRYRKTGTTAWTTINPVQPPGNNYTILNLTEQTQYEVQVATKCNGTE 989
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 990 GAFSPSQQFTT 1000
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
670-755 |
2.27e-13 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
:
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 67.52 E-value: 2.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 670 NPPGGVQVSAITQTTATVTWNASYNA-----TYVVQYRVAGTTNWTTFAPAPATNT-VTLTGLTAGTHYEVRIANVCSGV 743
Cdd:cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETsYTLTGLKPGTEYEFRVRAVNGGG 81
|
90
....*....|..
gi 2754901650 744 TGNFSAPTTFMT 755
Cdd:cd00063 82 ESPPSESVTVTT 93
|
|
| Por_Secre_tail |
TIGR04183 |
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
1599-1667 |
2.26e-10 |
|
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
:
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 58.19 E-value: 2.26e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2754901650 1599 IYPNPVSSVLYVKNI--SKKAKYKMYDAVGQIVANGIL-LNNQVNVSRLINGVYIIDIDDNGKTAQKKFIKE 1667
Cdd:TIGR04183 1 IYPNPAKGTLIIILLssSGKVKVEIYDLSGKLVKKTTLnNSNSIDLSNLSSGVYIVKITTGNGTITKKIIKK 72
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1247-1318 |
1.74e-09 |
|
Fibronectin type III domain;
:
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 55.88 E-value: 1.74e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 1247 PTPPNVTISNITTNSALVTWNPTVAG----VSYMMRWRKVGTAGWPNPIISlpASPANTYTLSGLDPYTTYEVQIA 1318
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQ 74
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1161-1236 |
4.49e-08 |
|
Fibronectin type III domain;
:
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 52.03 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAANN----LTYLLQYRVQGTT-AWTSIYVSGVP--YTLANLAASTIYEVQVAANCGITPG 1233
Cdd:pfam00041 3 PSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGePWNEITVPGTTtsVTLTGLKPGTEYEVRVQAVNGGGEG 82
|
...
gi 2754901650 1234 AFT 1236
Cdd:pfam00041 83 PPS 85
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1345-1427 |
1.46e-07 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
:
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 50.96 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWDPFPGA-----TYILKYRKVGIPSWTTVQVA---TNTYILNGLTELTKYEMQVANVCNGTP 1416
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTpgsETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 1417 ASFTPLYYFTT 1427
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
829-903 |
2.07e-06 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
:
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 46.01 E-value: 2.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2754901650 829 VSVWIDFNKDGIFdaneiiltganntttpvtgtftvpataysgpfttRMRVVLRDSNSPGACGNFTNGEVEDYAV 903
Cdd:pfam20009 2 LAVWIDWNNDGDM----------------------------------RVRVSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| FN3 super family |
cl27307 |
Fibronectin type 3 domain [General function prediction only]; |
456-937 |
6.91e-06 |
|
Fibronectin type 3 domain [General function prediction only];
The actual alignment was detected with superfamily member COG3401:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 6.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 456 LTASATDAENDAMTYTWEEVDLMTTSINSGNLGNTDGGASFRSVIPSANPTRYFPRLSSVLAGVLNNSNNlWEAVSTVPR 535
Cdd:COG3401 94 LTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSV-AGAGVVVSP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 536 TTKFAVTVRDNSPIANQQQTQSAIQTIIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVT-- 613
Cdd:COG3401 173 DTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTls 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 614 WNVVA-----------ASTPNDGSESLDFSSFP------LTVGGTAKIRVSAINNVFYAIGTAAIDTLPICTTNP--PGG 674
Cdd:COG3401 253 WDPVTesdatgyrvyrSNSGDGPFTKVATVTTTsytdtgLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLTPPaaPSG 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 675 VQVSAITQTTATVTWNASYN---ATYVVQYRVAGTTNWTTFAPAPATNTVTLTGLTAGTHYEVRIANVcsGVTGNFSAPT 751
Cdd:COG3401 333 LTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAV--DAAGNESAPS 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 752 TFMTPYCAATSSNTNLGYISNVTVAAVNSYTMSNNSGANNYTDYSIDATKLITLVRGTANNNISVSKSWPAALSNKAVSV 831
Cdd:COG3401 411 EEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 832 WIDFNKDGIfdaneiilTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVLRDSNSPGACGNFTNGEVEDYAVKLIDMQPC 911
Cdd:COG3401 491 VTTGSLVGG--------SGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVS 562
|
490 500
....*....|....*....|....*.
gi 2754901650 912 TNAAPSNITITNLTPTSANVSWTATA 937
Cdd:COG3401 563 GAGLGSGNLYLITTLGGSLLTTTSTN 588
|
|
| FN3 super family |
cl27307 |
Fibronectin type 3 domain [General function prediction only]; |
914-1175 |
8.13e-06 |
|
Fibronectin type 3 domain [General function prediction only];
The actual alignment was detected with superfamily member COG3401:
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 8.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 914 AAPSNITITNLTPTSANVSWTATAG---ATYILRYRKTGTTAWTTINPVqPPGNNYTILNLTEQTQYEVQV-ATKCNGTE 989
Cdd:COG3401 328 AAPSGLTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVtAVDAAGNE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 990 GAFSPSQQFTTPPLSYCPMTGTGTGDYISNVTVTSINPALTAMSNNSVQTNYI-------SYTTPATLITLEIGSANNKI 1062
Cdd:COG3401 407 SAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLAdggdtgnAVPFTTTSSTVTATTTDTTT 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1063 SVSKGWTGTANSGAVTAWIDFNRDGLFDNSERILISPANTTTPVTSTFNVPANAYSGPLNTTMRVVLQRTNAPVMCQNAI 1142
Cdd:COG3401 487 ANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVSGAGL 566
|
250 260 270
....*....|....*....|....*....|...
gi 2754901650 1143 NGEVEDYVVNLKPCSTETPTGLTFTAVTHNSAV 1175
Cdd:COG3401 567 GSGNLYLITTLGGSLLTTTSTNTNDVAGVHGGT 599
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
1504-1581 |
3.05e-04 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
:
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 39.85 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1504 IAVWIDFNRNGefdinervfisppnttspvtgtfsvpidafvsmtdykyvVMRV--AMQRDGIPVSCVNFGNGEVEDYSV 1581
Cdd:pfam20009 2 LAVWIDWNNDG---------------------------------------DMRVrvSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| myxo_dep_M36 super family |
cl45606 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
423-475 |
5.55e-03 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
The actual alignment was detected with superfamily member NF038112:
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 41.57 E-value: 5.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 423 AARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTYTWEEV 475
Cdd:NF038112 1268 APDTVTVLVRNVNRAPVAVAGAPATVDERSTVTLDGSGTDADGDALTYAWTQT 1320
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Reprolysin_4 |
pfam13583 |
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the ... |
196-410 |
8.13e-36 |
|
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the characteriztic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.
Pssm-ID: 404471 Cd Length: 203 Bit Score: 135.44 E-value: 8.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 196 RTMRLAMSVTGEYTQFHGgTVAGALTAINATLTRVNGVFEKDFALHLNLQNYPNVIYTNPATDPYATVVPGAGVpgswNT 275
Cdd:pfam13583 3 RVYRVAVATDCTYSASFG-SVDELRANINATVTTANEVYGRDFNVSLALISDRDVIYTDSSTDSFNADCSGGDL----GN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 276 ELQQTLTANVGNANYDIGHLFGASGGGGNAGCIGCVcldpGGSHPSTGAGKGSGITSPSngipqGDTFDIdfVAHEMGHQ 355
Cdd:pfam13583 78 WRLATLTSWRDSLNYDLAYLTLMTGPSGQNVGVAWV----GALCSSARQNAKASGVARS-----RDEWDI--FAHEIGHT 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 356 LGGNHTFSYQNQGAPVQMEPGSGTTIMAYAG-VANSNLAPPPGTTFDIQPNSDAYF 410
Cdd:pfam13583 147 FGAVHDCSSQGEGLSSSTEDGSGQTIMSYAStASQTAFSPCTIRNINGNPCSQANY 202
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
915-1000 |
3.54e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 72.53 E-value: 3.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGA-----TYILRYRKTGTTAWTTINPVQPPGNNYTILNLTEQTQYEVQVATKCNGTE 989
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 990 GAFSPSQQFTT 1000
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
670-755 |
2.27e-13 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 67.52 E-value: 2.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 670 NPPGGVQVSAITQTTATVTWNASYNA-----TYVVQYRVAGTTNWTTFAPAPATNT-VTLTGLTAGTHYEVRIANVCSGV 743
Cdd:cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETsYTLTGLKPGTEYEFRVRAVNGGG 81
|
90
....*....|..
gi 2754901650 744 TGNFSAPTTFMT 755
Cdd:cd00063 82 ESPPSESVTVTT 93
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
671-748 |
3.82e-11 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 60.89 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 671 PPGGVQVSAITQTTATVTWNASYNAT-----YVVQYRVAGTTN-WTTFAPAPATNTVTLTGLTAGTHYEVRIANVCSGVT 744
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitgYEVEYRPKNSGEpWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGE 81
|
....
gi 2754901650 745 GNFS 748
Cdd:pfam00041 82 GPPS 85
|
|
| Por_Secre_tail |
TIGR04183 |
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
1599-1667 |
2.26e-10 |
|
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 58.19 E-value: 2.26e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2754901650 1599 IYPNPVSSVLYVKNI--SKKAKYKMYDAVGQIVANGIL-LNNQVNVSRLINGVYIIDIDDNGKTAQKKFIKE 1667
Cdd:TIGR04183 1 IYPNPAKGTLIIILLssSGKVKVEIYDLSGKLVKKTTLnNSNSIDLSNLSSGVYIVKITTGNGTITKKIIKK 72
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
671-737 |
3.83e-10 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 58.01 E-value: 3.83e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 671 PPGGVQVSAITQTTATVTWNASYNAT---YVVQYRVAGTT---NWTTFAPAPATNTVTLTGLTAGTHYEVRIA 737
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRVEYREegsEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
|
| Por_Secre_tail |
pfam18962 |
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
1599-1665 |
7.68e-10 |
|
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 56.85 E-value: 7.68e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754901650 1599 IYPNPVSSVLYV---KNISKKAKYKMYDAVGQIVANGILLNN----QVNVSRLINGVYIIDIDDNGKTAQKKFI 1665
Cdd:pfam18962 1 IYPNPAKDVLNIslkNSNSSNLNISIYDILGKLVKSNSKTNGnntkTIDVSNLSSGIYFVKINSGNGSTTKKLI 74
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1247-1318 |
1.74e-09 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 55.88 E-value: 1.74e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 1247 PTPPNVTISNITTNSALVTWNPTVAG----VSYMMRWRKVGTAGWPNPIISlpASPANTYTLSGLDPYTTYEVQIA 1318
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQ 74
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
915-993 |
3.12e-09 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 55.11 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGAT-----YILRYRKTGTT-AWTTINpVQPPGNNYTILNLTEQTQYEVQVATKCNGT 988
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitgYEVEYRPKNSGePWNEIT-VPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
|
....*
gi 2754901650 989 EGAFS 993
Cdd:pfam00041 81 EGPPS 85
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
915-990 |
6.20e-09 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 54.54 E-value: 6.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGAT---YILRYR---KTGTTAWTTINpVQPPGNNYTILNLTEQTQYEVQVATKCNGT 988
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRveyREEGSEWKEVN-VTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
|
..
gi 2754901650 989 EG 990
Cdd:smart00060 82 EG 83
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1249-1338 |
1.11e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 54.04 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1249 PPNVTISNITTNSALVTWNP----TVAGVSYMMRWRKVGTAGWPNpiISLPASPANTYTLSGLDPYTTYEVQIanQCAGE 1324
Cdd:cd00063 4 PTNLRVTDVTSTSVTLSWTPpeddGGPITGYVVEYREKGSGDWKE--VEVTPGSETSYTLTGLKPGTEYEFRV--RAVNG 79
|
90
....*....|....
gi 2754901650 1325 NTPNPYSNPNVFTT 1338
Cdd:cd00063 80 GGESPPSESVTVTT 93
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1247-1318 |
3.33e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 52.23 E-value: 3.33e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754901650 1247 PTPPNVTISNITTNSALVTWNPTV--AGVSYMMRWRKVGTAGWPNPIISLPASPANTYTLSGLDPYTTYEVQIA 1318
Cdd:smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPddGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1161-1236 |
4.49e-08 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 52.03 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAANN----LTYLLQYRVQGTT-AWTSIYVSGVP--YTLANLAASTIYEVQVAANCGITPG 1233
Cdd:pfam00041 3 PSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGePWNEITVPGTTtsVTLTGLKPGTEYEVRVQAVNGGGEG 82
|
...
gi 2754901650 1234 AFT 1236
Cdd:pfam00041 83 PPS 85
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1161-1243 |
5.72e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 52.11 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAANN----LTYLLQYRVQGTTAWTSIYVSGVP---YTLANLAASTIYEVQVAANCGITPG 1233
Cdd:cd00063 4 PTNLRVTDVTSTSVTLSWTPPEDDggpiTGYVVEYREKGSGDWKEVEVTPGSetsYTLTGLKPGTEYEFRVRAVNGGGES 83
|
90
....*....|
gi 2754901650 1234 AFTPVKTFAT 1243
Cdd:cd00063 84 PPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1345-1427 |
1.46e-07 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 50.96 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWDPFPGA-----TYILKYRKVGIPSWTTVQVA---TNTYILNGLTELTKYEMQVANVCNGTP 1416
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTpgsETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 1417 ASFTPLYYFTT 1427
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
829-903 |
2.07e-06 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 46.01 E-value: 2.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2754901650 829 VSVWIDFNKDGIFdaneiiltganntttpvtgtftvpataysgpfttRMRVVLRDSNSPGACGNFTNGEVEDYAV 903
Cdd:pfam20009 2 LAVWIDWNNDGDM----------------------------------RVRVSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
456-937 |
6.91e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 6.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 456 LTASATDAENDAMTYTWEEVDLMTTSINSGNLGNTDGGASFRSVIPSANPTRYFPRLSSVLAGVLNNSNNlWEAVSTVPR 535
Cdd:COG3401 94 LTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSV-AGAGVVVSP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 536 TTKFAVTVRDNSPIANQQQTQSAIQTIIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVT-- 613
Cdd:COG3401 173 DTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTls 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 614 WNVVA-----------ASTPNDGSESLDFSSFP------LTVGGTAKIRVSAINNVFYAIGTAAIDTLPICTTNP--PGG 674
Cdd:COG3401 253 WDPVTesdatgyrvyrSNSGDGPFTKVATVTTTsytdtgLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLTPPaaPSG 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 675 VQVSAITQTTATVTWNASYN---ATYVVQYRVAGTTNWTTFAPAPATNTVTLTGLTAGTHYEVRIANVcsGVTGNFSAPT 751
Cdd:COG3401 333 LTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAV--DAAGNESAPS 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 752 TFMTPYCAATSSNTNLGYISNVTVAAVNSYTMSNNSGANNYTDYSIDATKLITLVRGTANNNISVSKSWPAALSNKAVSV 831
Cdd:COG3401 411 EEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 832 WIDFNKDGIfdaneiilTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVLRDSNSPGACGNFTNGEVEDYAVKLIDMQPC 911
Cdd:COG3401 491 VTTGSLVGG--------SGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVS 562
|
490 500
....*....|....*....|....*.
gi 2754901650 912 TNAAPSNITITNLTPTSANVSWTATA 937
Cdd:COG3401 563 GAGLGSGNLYLITTLGGSLLTTTSTN 588
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1161-1226 |
7.71e-06 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 45.68 E-value: 7.71e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAA--NNLTYLLQYRVQGTTA---WTSIYVSGVP--YTLANLAASTIYEVQVAA 1226
Cdd:smart00060 4 PSNLRVTDVTSTSVTLSWEPPPddGITGYIVGYRVEYREEgseWKEVNVTPSStsYTLTGLKPGTEYEFRVRA 76
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
914-1175 |
8.13e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 8.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 914 AAPSNITITNLTPTSANVSWTATAG---ATYILRYRKTGTTAWTTINPVqPPGNNYTILNLTEQTQYEVQV-ATKCNGTE 989
Cdd:COG3401 328 AAPSGLTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVtAVDAAGNE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 990 GAFSPSQQFTTPPLSYCPMTGTGTGDYISNVTVTSINPALTAMSNNSVQTNYI-------SYTTPATLITLEIGSANNKI 1062
Cdd:COG3401 407 SAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLAdggdtgnAVPFTTTSSTVTATTTDTTT 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1063 SVSKGWTGTANSGAVTAWIDFNRDGLFDNSERILISPANTTTPVTSTFNVPANAYSGPLNTTMRVVLQRTNAPVMCQNAI 1142
Cdd:COG3401 487 ANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVSGAGL 566
|
250 260 270
....*....|....*....|....*....|...
gi 2754901650 1143 NGEVEDYVVNLKPCSTETPTGLTFTAVTHNSAV 1175
Cdd:COG3401 567 GSGNLYLITTLGGSLLTTTSTNTNDVAGVHGGT 599
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1345-1409 |
2.15e-05 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 44.53 E-value: 2.15e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWDPFPGAT---YILKYRKVG---IPSWTTVQV--ATNTYILNGLTELTKYEMQVA 1409
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRVEYreeGSEWKEVNVtpSSTSYTLTGLKPGTEYEFRVR 75
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
1077-1152 |
3.75e-05 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 42.54 E-value: 3.75e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2754901650 1077 VTAWIDFNRDGlfdnserilispantttpvtstfnvpanaysgplntTMRVVLQRTNAPVM--CQNAINGEVEDYVVN 1152
Cdd:pfam20009 2 LAVWIDWNNDG------------------------------------DMRVRVSSSGGGATdpCGTASDGEVEDYTVN 43
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1345-1415 |
8.02e-05 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 42.79 E-value: 8.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWD-PFPG----ATYILKYRKVG-IPSWTTVQVA--TNTYILNGLTELTKYEMQVANVCNGT 1415
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTpPPDGngpiTGYEVEYRPKNsGEPWNEITVPgtTTSVTLTGLKPGTEYEVRVQAVNGGG 80
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
1504-1581 |
3.05e-04 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 39.85 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1504 IAVWIDFNRNGefdinervfisppnttspvtgtfsvpidafvsmtdykyvVMRV--AMQRDGIPVSCVNFGNGEVEDYSV 1581
Cdd:pfam20009 2 LAVWIDWNNDG---------------------------------------DMRVrvSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
423-475 |
5.55e-03 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 41.57 E-value: 5.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 423 AARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTYTWEEV 475
Cdd:NF038112 1268 APDTVTVLVRNVNRAPVAVAGAPATVDERSTVTLDGSGTDADGDALTYAWTQT 1320
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
599-753 |
5.88e-03 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 41.47 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 599 VVNVKIDFTTDNGVTWNVVAASTPNDGS----ESLDFSSFPLTV-------GGTAKIRVSAIN-NVFYAIGTAAIDTLPI 666
Cdd:COG4733 450 SVARTVQSVAGRTLTVSTAYSETPEAGAvwafGPDELETQLFRVvsieeneDGTYTITAVQHApEKYAAIDAGAFDDVPP 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 667 ctTNPPGGVQVS--------AITQTTATVTWNASYNAT-YVVQYRvAGTTNWTTfAPAPATNTVTLTGLTAGThYEVRI- 736
Cdd:COG4733 530 --QWPPVNVTTSeslsvvaqGTAVTTLTVSWDAPAGAVaYEVEWR-RDDGNWVS-VPRTSGTSFEVPGIYAGD-YEVRVr 604
|
170
....*....|....*..
gi 2754901650 737 ANVCSGVTGNFSAPTTF 753
Cdd:COG4733 605 AINALGVSSAWAASSET 621
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
423-475 |
8.38e-03 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 41.18 E-value: 8.38e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 423 AARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTYTWEEV 475
Cdd:NF038112 1455 ADVTVTVTVRNVNRAPVAHAGESITVDEGSTVTLDASATDPDGDTLTYAWTQV 1507
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Reprolysin_4 |
pfam13583 |
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the ... |
196-410 |
8.13e-36 |
|
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the characteriztic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.
Pssm-ID: 404471 Cd Length: 203 Bit Score: 135.44 E-value: 8.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 196 RTMRLAMSVTGEYTQFHGgTVAGALTAINATLTRVNGVFEKDFALHLNLQNYPNVIYTNPATDPYATVVPGAGVpgswNT 275
Cdd:pfam13583 3 RVYRVAVATDCTYSASFG-SVDELRANINATVTTANEVYGRDFNVSLALISDRDVIYTDSSTDSFNADCSGGDL----GN 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 276 ELQQTLTANVGNANYDIGHLFGASGGGGNAGCIGCVcldpGGSHPSTGAGKGSGITSPSngipqGDTFDIdfVAHEMGHQ 355
Cdd:pfam13583 78 WRLATLTSWRDSLNYDLAYLTLMTGPSGQNVGVAWV----GALCSSARQNAKASGVARS-----RDEWDI--FAHEIGHT 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 356 LGGNHTFSYQNQGAPVQMEPGSGTTIMAYAG-VANSNLAPPPGTTFDIQPNSDAYF 410
Cdd:pfam13583 147 FGAVHDCSSQGEGLSSSTEDGSGQTIMSYAStASQTAFSPCTIRNINGNPCSQANY 202
|
|
| Reprolysin_3 |
pfam13582 |
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the ... |
221-361 |
4.43e-20 |
|
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the characteriztic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.
Pssm-ID: 463926 [Multi-domain] Cd Length: 122 Bit Score: 87.43 E-value: 4.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 221 TAINATLTRVNGVFEKDFALHLNLQNypnVIYTNPATDPYATvvpgaGVPGSWNTELQQTLTANVGNANYDIGHLFgasg 300
Cdd:pfam13582 1 ARIVSLVNRANTIYERDLGIRLQLAA---IIITTSADTPYTS-----SDALEILDELQEVNDTRIGQYGYDLGHLF---- 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2754901650 301 gGGNAGCIGCVCLDPGGSHPStgaGKGSGITSPSNGIPQgdtFDIDFVAHEMGHQLGGNHT 361
Cdd:pfam13582 69 -TGRDGGGGGGIAYVGGVCNS---GSKFGVNSGSGPVGD---TGADTFAHEIGHNFGLNHT 122
|
|
| Reprolysin_5 |
pfam13688 |
Metallo-peptidase family M12; |
196-392 |
9.42e-19 |
|
Metallo-peptidase family M12;
Pssm-ID: 372673 Cd Length: 191 Bit Score: 85.93 E-value: 9.42e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 196 RTMRLAMSVTGEYTQFHGGTVAGALtaINATLTRVNGVFEKDFALHLNLQNYpnVIYTNPATDPyatvvPGAGVPGSWNT 275
Cdd:pfam13688 3 RTVALLVAADCSYVAAFGGDAAQAN--IINMVNTASNVYERDFNISLGLVNL--TISDSTCPYT-----PPACSTGDSSD 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 276 ELQ--QTLTANVGNANYDIGHLFGASGgggnagcigcvcLDPGG-SHP--STGAGKGSGITSP--SNGIPQGDTFDIDFV 348
Cdd:pfam13688 74 RLSefQDFSAWRGTQNDDLAYLFLMTN------------CSGGGlAWLgqLCNSGSAGSVSTRvsGNNVVVSTATEWQVF 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2754901650 349 AHEMGHQLGGNHTF--SYQNQGAP--VQMEPGSGTTIMAYAGVANSNL 392
Cdd:pfam13688 142 AHEIGHNFGAVHDCdsSTSSQCCPpsNSTCPAGGRYIMNPSSSPNSTD 189
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
915-1000 |
3.54e-15 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 72.53 E-value: 3.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGA-----TYILRYRKTGTTAWTTINPVQPPGNNYTILNLTEQTQYEVQVATKCNGTE 989
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 990 GAFSPSQQFTT 1000
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
670-755 |
2.27e-13 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 67.52 E-value: 2.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 670 NPPGGVQVSAITQTTATVTWNASYNA-----TYVVQYRVAGTTNWTTFAPAPATNT-VTLTGLTAGTHYEVRIANVCSGV 743
Cdd:cd00063 2 SPPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTPGSETsYTLTGLKPGTEYEFRVRAVNGGG 81
|
90
....*....|..
gi 2754901650 744 TGNFSAPTTFMT 755
Cdd:cd00063 82 ESPPSESVTVTT 93
|
|
| Reprolysin_2 |
pfam13574 |
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the ... |
219-395 |
4.49e-12 |
|
Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the characteriztic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.
Pssm-ID: 372637 Cd Length: 193 Bit Score: 66.88 E-value: 4.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 219 ALTAINATLTRVNGVFEKD-FALHLNLQNYPNVIYTNPATDPYATVVPGAGvpgsWNTELQQTLTANVGNANYDIGHLFG 297
Cdd:pfam13574 3 VTENLVNVVNRVNQIYEPDdININGGLVNPGEIPATTSASDSGNNYCNSPT----TIVRRLNFLSQWRGEQDYCLAHLVT 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 298 ASGGGGNAGCIGCVcldpgGSHPSTGAGKGSGITSPSNGIPQGDTF----DIDFVAHEMGHQLGGNHTF-------SYQN 366
Cdd:pfam13574 79 MGTFSGGELGLAYV-----GQICQKGASSPKTNTGLSTTTNYGSFNyptqEWDVVAHEVGHNFGATHDCdgsqyasSGCE 153
|
170 180
....*....|....*....|....*....
gi 2754901650 367 QGAPVQMEPGSGTTIMAYAGVANSNLAPP 395
Cdd:pfam13574 154 RNAATSVCSANGSFIMNPASKSNNDLFSP 182
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
671-748 |
3.82e-11 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 60.89 E-value: 3.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 671 PPGGVQVSAITQTTATVTWNASYNAT-----YVVQYRVAGTTN-WTTFAPAPATNTVTLTGLTAGTHYEVRIANVCSGVT 744
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitgYEVEYRPKNSGEpWNEITVPGTTTSVTLTGLKPGTEYEVRVQAVNGGGE 81
|
....
gi 2754901650 745 GNFS 748
Cdd:pfam00041 82 GPPS 85
|
|
| Por_Secre_tail |
TIGR04183 |
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
1599-1667 |
2.26e-10 |
|
Por secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.
Pssm-ID: 275036 [Multi-domain] Cd Length: 72 Bit Score: 58.19 E-value: 2.26e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2754901650 1599 IYPNPVSSVLYVKNI--SKKAKYKMYDAVGQIVANGIL-LNNQVNVSRLINGVYIIDIDDNGKTAQKKFIKE 1667
Cdd:TIGR04183 1 IYPNPAKGTLIIILLssSGKVKVEIYDLSGKLVKKTTLnNSNSIDLSNLSSGVYIVKITTGNGTITKKIIKK 72
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
671-737 |
3.83e-10 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 58.01 E-value: 3.83e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 671 PPGGVQVSAITQTTATVTWNASYNAT---YVVQYRVAGTT---NWTTFAPAPATNTVTLTGLTAGTHYEVRIA 737
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRVEYREegsEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
|
| Por_Secre_tail |
pfam18962 |
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, ... |
1599-1665 |
7.68e-10 |
|
Secretion system C-terminal sorting domain; Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber have on average twenty or more copies of this C-terminal domain, associated with sorting to the outer membrane and covalent modification. This domain targets proteins to type IX secretion systems and is secreted then cleaved off by a C-terminal signal peptidease. Based on similarity to other families it is likely that this domain adopts an immunoglobulin like fold.
Pssm-ID: 436869 [Multi-domain] Cd Length: 75 Bit Score: 56.85 E-value: 7.68e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754901650 1599 IYPNPVSSVLYV---KNISKKAKYKMYDAVGQIVANGILLNN----QVNVSRLINGVYIIDIDDNGKTAQKKFI 1665
Cdd:pfam18962 1 IYPNPAKDVLNIslkNSNSSNLNISIYDILGKLVKSNSKTNGnntkTIDVSNLSSGIYFVKINSGNGSTTKKLI 74
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1247-1318 |
1.74e-09 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 55.88 E-value: 1.74e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2754901650 1247 PTPPNVTISNITTNSALVTWNPTVAG----VSYMMRWRKVGTAGWPNPIISlpASPANTYTLSGLDPYTTYEVQIA 1318
Cdd:pfam00041 1 SAPSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGEPWNEITV--PGTTTSVTLTGLKPGTEYEVRVQ 74
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
915-993 |
3.12e-09 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 55.11 E-value: 3.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGAT-----YILRYRKTGTT-AWTTINpVQPPGNNYTILNLTEQTQYEVQVATKCNGT 988
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitgYEVEYRPKNSGePWNEIT-VPGTTTSVTLTGLKPGTEYEVRVQAVNGGG 80
|
....*
gi 2754901650 989 EGAFS 993
Cdd:pfam00041 81 EGPPS 85
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
915-990 |
6.20e-09 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 54.54 E-value: 6.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 915 APSNITITNLTPTSANVSWTATAGAT---YILRYR---KTGTTAWTTINpVQPPGNNYTILNLTEQTQYEVQVATKCNGT 988
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRveyREEGSEWKEVN-VTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81
|
..
gi 2754901650 989 EG 990
Cdd:smart00060 82 EG 83
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1249-1338 |
1.11e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 54.04 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1249 PPNVTISNITTNSALVTWNP----TVAGVSYMMRWRKVGTAGWPNpiISLPASPANTYTLSGLDPYTTYEVQIanQCAGE 1324
Cdd:cd00063 4 PTNLRVTDVTSTSVTLSWTPpeddGGPITGYVVEYREKGSGDWKE--VEVTPGSETSYTLTGLKPGTEYEFRV--RAVNG 79
|
90
....*....|....
gi 2754901650 1325 NTPNPYSNPNVFTT 1338
Cdd:cd00063 80 GGESPPSESVTVTT 93
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1247-1318 |
3.33e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 52.23 E-value: 3.33e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754901650 1247 PTPPNVTISNITTNSALVTWNPTV--AGVSYMMRWRKVGTAGWPNPIISLPASPANTYTLSGLDPYTTYEVQIA 1318
Cdd:smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPddGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVR 75
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1161-1236 |
4.49e-08 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 52.03 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAANN----LTYLLQYRVQGTT-AWTSIYVSGVP--YTLANLAASTIYEVQVAANCGITPG 1233
Cdd:pfam00041 3 PSNLTVTDVTSTSLTVSWTPPPDGngpiTGYEVEYRPKNSGePWNEITVPGTTtsVTLTGLKPGTEYEVRVQAVNGGGEG 82
|
...
gi 2754901650 1234 AFT 1236
Cdd:pfam00041 83 PPS 85
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1161-1243 |
5.72e-08 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 52.11 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAANN----LTYLLQYRVQGTTAWTSIYVSGVP---YTLANLAASTIYEVQVAANCGITPG 1233
Cdd:cd00063 4 PTNLRVTDVTSTSVTLSWTPPEDDggpiTGYVVEYREKGSGDWKEVEVTPGSetsYTLTGLKPGTEYEFRVRAVNGGGES 83
|
90
....*....|
gi 2754901650 1234 AFTPVKTFAT 1243
Cdd:cd00063 84 PPSESVTVTT 93
|
|
| FN3 |
cd00063 |
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ... |
1345-1427 |
1.46e-07 |
|
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Pssm-ID: 238020 [Multi-domain] Cd Length: 93 Bit Score: 50.96 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWDPFPGA-----TYILKYRKVGIPSWTTVQVA---TNTYILNGLTELTKYEMQVANVCNGTP 1416
Cdd:cd00063 3 PPTNLRVTDVTSTSVTLSWTPPEDDggpitGYVVEYREKGSGDWKEVEVTpgsETSYTLTGLKPGTEYEFRVRAVNGGGE 82
|
90
....*....|.
gi 2754901650 1417 ASFTPLYYFTT 1427
Cdd:cd00063 83 SPPSESVTVTT 93
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
829-903 |
2.07e-06 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 46.01 E-value: 2.07e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2754901650 829 VSVWIDFNKDGIFdaneiiltganntttpvtgtftvpataysgpfttRMRVVLRDSNSPGACGNFTNGEVEDYAV 903
Cdd:pfam20009 2 LAVWIDWNNDGDM----------------------------------RVRVSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
456-937 |
6.91e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 6.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 456 LTASATDAENDAMTYTWEEVDLMTTSINSGNLGNTDGGASFRSVIPSANPTRYFPRLSSVLAGVLNNSNNlWEAVSTVPR 535
Cdd:COG3401 94 LTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTTASSV-AGAGVVVSP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 536 TTKFAVTVRDNSPIANQQQTQSAIQTIIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVT-- 613
Cdd:COG3401 173 DTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTPPSAPTGLTATADTPGSVTls 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 614 WNVVA-----------ASTPNDGSESLDFSSFP------LTVGGTAKIRVSAINNVFYAIGTAAIDTLPICTTNP--PGG 674
Cdd:COG3401 253 WDPVTesdatgyrvyrSNSGDGPFTKVATVTTTsytdtgLTNGTTYYYRVTAVDAAGNESAPSNVVSVTTDLTPPaaPSG 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 675 VQVSAITQTTATVTWNASYN---ATYVVQYRVAGTTNWTTFAPAPATNTVTLTGLTAGTHYEVRIANVcsGVTGNFSAPT 751
Cdd:COG3401 333 LTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAETVTTTSYTDTGLTPGTTYYYKVTAV--DAAGNESAPS 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 752 TFMTPYCAATSSNTNLGYISNVTVAAVNSYTMSNNSGANNYTDYSIDATKLITLVRGTANNNISVSKSWPAALSNKAVSV 831
Cdd:COG3401 411 EEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSSTVTATTTDTTTANLS 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 832 WIDFNKDGIfdaneiilTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVLRDSNSPGACGNFTNGEVEDYAVKLIDMQPC 911
Cdd:COG3401 491 VTTGSLVGG--------SGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVS 562
|
490 500
....*....|....*....|....*.
gi 2754901650 912 TNAAPSNITITNLTPTSANVSWTATA 937
Cdd:COG3401 563 GAGLGSGNLYLITTLGGSLLTTTSTN 588
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1161-1226 |
7.71e-06 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 45.68 E-value: 7.71e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 1161 PTGLTFTAVTHNSAVINWTAAA--NNLTYLLQYRVQGTTA---WTSIYVSGVP--YTLANLAASTIYEVQVAA 1226
Cdd:smart00060 4 PSNLRVTDVTSTSVTLSWEPPPddGITGYIVGYRVEYREEgseWKEVNVTPSStsYTLTGLKPGTEYEFRVRA 76
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
914-1175 |
8.13e-06 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 50.77 E-value: 8.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 914 AAPSNITITNLTPTSANVSWTATAG---ATYILRYRKTGTTAWTTINPVqPPGNNYTILNLTEQTQYEVQV-ATKCNGTE 989
Cdd:COG3401 328 AAPSGLTATAVGSSSITLSWTASSDadvTGYNVYRSTSGGGTYTKIAET-VTTTSYTDTGLTPGTTYYYKVtAVDAAGNE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 990 GAFSPSQQFTTPPLSYCPMTGTGTGDYISNVTVTSINPALTAMSNNSVQTNYI-------SYTTPATLITLEIGSANNKI 1062
Cdd:COG3401 407 SAPSEEVSATTASAASGESLTASVDAVPLTDVAGATAAASAASNPGVSAAVLAdggdtgnAVPFTTTSSTVTATTTDTTT 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1063 SVSKGWTGTANSGAVTAWIDFNRDGLFDNSERILISPANTTTPVTSTFNVPANAYSGPLNTTMRVVLQRTNAPVMCQNAI 1142
Cdd:COG3401 487 ANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTSASSSVSGAGL 566
|
250 260 270
....*....|....*....|....*....|...
gi 2754901650 1143 NGEVEDYVVNLKPCSTETPTGLTFTAVTHNSAV 1175
Cdd:COG3401 567 GSGNLYLITTLGGSLLTTTSTNTNDVAGVHGGT 599
|
|
| FN3 |
smart00060 |
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ... |
1345-1409 |
2.15e-05 |
|
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Pssm-ID: 214495 [Multi-domain] Cd Length: 83 Bit Score: 44.53 E-value: 2.15e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWDPFPGAT---YILKYRKVG---IPSWTTVQV--ATNTYILNGLTELTKYEMQVA 1409
Cdd:smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDGitgYIVGYRVEYreeGSEWKEVNVtpSSTSYTLTGLKPGTEYEFRVR 75
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
1077-1152 |
3.75e-05 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 42.54 E-value: 3.75e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2754901650 1077 VTAWIDFNRDGlfdnserilispantttpvtstfnvpanaysgplntTMRVVLQRTNAPVM--CQNAINGEVEDYVVN 1152
Cdd:pfam20009 2 LAVWIDWNNDG------------------------------------DMRVRVSSSGGGATdpCGTASDGEVEDYTVN 43
|
|
| FN3 |
COG3401 |
Fibronectin type 3 domain [General function prediction only]; |
1010-1471 |
4.40e-05 |
|
Fibronectin type 3 domain [General function prediction only];
Pssm-ID: 442628 [Multi-domain] Cd Length: 603 Bit Score: 48.07 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1010 GTGTGDYISNVTVTSINPALTAMSNNSVQTNYISYTTPATLITLEIGSANNKISVSKGWTGTANSGAVTAWIDFNRDGLF 1089
Cdd:COG3401 80 AAVAVAAAPPTATGLTTLTGSGSVGGATNTGLTSSDEVPSPAVGTATTATAVAGGAATAGTYALGAGLYGVDGANASGTT 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1090 DNSERILI---SPANTTTPVTSTFNVPANAYSGPLNTTMRVVLQRTNAPVMCQNAINGEVEDYVVNLKPCST--ETPTGL 1164
Cdd:COG3401 160 ASSVAGAGvvvSPDTSATAAVATTSLTVTSTTLVDGGGDIEPGTTYYYRVAATDTGGESAPSNEVSVTTPTTppSAPTGL 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1165 TFTAVTHNSAVINWTAAANN--LTYLLQYRVQGTTAWTSIY-VSGVPYTLANLAASTIYEVQVAA-NCGITPGAFTPVKT 1240
Cdd:COG3401 240 TATADTPGSVTLSWDPVTESdaTGYRVYRSNSGDGPFTKVAtVTTTSYTDTGLTNGTTYYYRVTAvDAAGNESAPSNVVS 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1241 FATRCDP--TPPNVTISNITTNSALVTWNP-TVAGVSYMMRWRKVGTAGWPNPIISLpaSPANTYTLSGLDPYTTYEVQI 1317
Cdd:COG3401 320 VTTDLTPpaAPSGLTATAVGSSSITLSWTAsSDADVTGYNVYRSTSGGGTYTKIAET--VTTTSYTDTGLTPGTTYYYKV 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1318 ANQCAGENTPnPYSNPNVFTTERICELPPPGLTIT------QLLPTSAAIKWDPFPGATYILKYRKVGIPSWTTVQVATN 1391
Cdd:COG3401 398 TAVDAAGNES-APSEEVSATTASAASGESLTASVDavpltdVAGATAAASAASNPGVSAAVLADGGDTGNAVPFTTTSST 476
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1392 TYILNGLTELTKYEMQVANVCNGTPASFTPLYYFTTPTVTYCKMSSLSSANEYISKVTVKPNGKPVMENTSGASTYTDYT 1471
Cdd:COG3401 477 VTATTTDTTTANLSVTTGSLVGGSGASSVTNSVSVIGASAAAAVGGAPDGTPNVTGASPVTVGASTGDVLITDLVSLTTS 556
|
|
| fn3 |
pfam00041 |
Fibronectin type III domain; |
1345-1415 |
8.02e-05 |
|
Fibronectin type III domain;
Pssm-ID: 394996 [Multi-domain] Cd Length: 85 Bit Score: 42.79 E-value: 8.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2754901650 1345 PPPGLTITQLLPTSAAIKWD-PFPG----ATYILKYRKVG-IPSWTTVQVA--TNTYILNGLTELTKYEMQVANVCNGT 1415
Cdd:pfam00041 2 APSNLTVTDVTSTSLTVSWTpPPDGngpiTGYEVEYRPKNsGEPWNEITVPgtTTSVTLTGLKPGTEYEVRVQAVNGGG 80
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
584-983 |
1.82e-04 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 46.48 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 584 SVTWDvvstnaAPYNVVNVKIDFTTDNGvTWNVVAASTpndgSESLDFssfPLTVGGTAKIRVSAIN--NVFYAIGTAAI 661
Cdd:COG4733 555 TVSWD------APAGAVAYEVEWRRDDG-NWVSVPRTS----GTSFEV---PGIYAGDYEVRVRAINalGVSSAWAASSE 620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 662 DTLPICTTNP--PGGVQVSAITqTTATVTWNASYNAT---YVVQYRVAGTTNWTTFAPAPA-TNTVTLTGLTAGTHYEVR 735
Cdd:COG4733 621 TTVTGKTAPPpaPTGLTATGGL-GGITLSWSFPVDADtlrTEIRYSTTGDWASATVAQALYpGNTYTLAGLKAGQTYYYR 699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 736 IANVcsGVTGNFSAPTTfmtpycAATSSNTNLGYISNVTVAAVNSYTMSN-NSGANNYTDYSIDATKLITLVRGTANNNI 814
Cdd:COG4733 700 ARAV--DRSGNVSAWWV------SGQASADAAGILDAITGQILETELGQElDAIIQNATVAEVVAATVTDVTAQIDTAVL 771
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 815 SVSKSWPAALSNKAVSVWIDFNKDGIFDANEIILTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVLRDSNSPGACGNFT 894
Cdd:COG4733 772 FAGVATAAAIGAEARVAATVAESATAAAATGTAADAAGDASGGVTAGTSGTTGAGDTAASTTRVAAAVVLAGVVVYGDAI 851
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 895 NGEVEDYAVKLIDMQPCTNAAPSNITITNLTPtsANVSWTATAGATYILRYRKTGTTAWTTINPVQPPGNNYTILNLTEQ 974
Cdd:COG4733 852 IESGNTGDIVATGDIASAAAGAVATTVSGTTA--ADVSAVADSTAASLTAIVIAATTIIDAIGDGTTREPAGDIGASGGA 929
|
....*....
gi 2754901650 975 TQYEVQVAT 983
Cdd:COG4733 930 QGFAVTIVG 938
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
479-942 |
2.21e-04 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 46.31 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 479 TTSINSGNLGNTDGGASFRSVIPSANPTRYFPRLSSVLAGVLNNSNNLWEAVSTVPRTTKFAVTVRDNSPIANQQQTQSA 558
Cdd:COG4625 86 GGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 559 IQTIIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVkIDFTTDNGVTWNVVAASTPNDGSESLDFSSFPLTV 638
Cdd:COG4625 166 GGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGG-GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 639 GGTAKIRVSAINNVFYAIGTAAIDTLPICTTNPPGGVQVSAITQTTATVTWNASYNATYVVqyrVAGTTNWTTFAPAPAT 718
Cdd:COG4625 245 GGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGG---GGGGGGGGGGGGGGGG 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 719 NTVTLTGLTAGTHYEVRIANVCSGVTGNFSAPTTFMTPYCAATSSNTNLGYISNVTVAAVNSYTMSNNSGANNYTDYSID 798
Cdd:COG4625 322 GGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGG 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 799 ATKLITLVRGTANNNISVSKSWPAALSNKAVSVWIDFNKDGIFDANEIILTGANNTTTPVTGTFTVPATAYSGPFTTRMR 878
Cdd:COG4625 402 GGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGN 481
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2754901650 879 VVLRDSNSPGACGNFTNGEVEDYAVKLIDMQPCTNAAPSNITITNLTPTSANVSWTATAGATYI 942
Cdd:COG4625 482 NTYTGTTTVNGGGNYTQSAGSTLAVEVDAANSDRLVVTGTATLNGGTVVVLAGGYAPGTTYTIL 545
|
|
| GEVED |
pfam20009 |
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. ... |
1504-1581 |
3.05e-04 |
|
GEVED domain; Ths presumed domain is found in the CshA protein from Streptococcus gordonii. The domain is named after the sequence found in CshA in the conserved C-terminal region. The conserved negatively charged residues suggests that this domain may bind to calcium ions. This domain is part of the non-repetitive region NR3.
Pssm-ID: 466256 [Multi-domain] Cd Length: 43 Bit Score: 39.85 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1504 IAVWIDFNRNGefdinervfisppnttspvtgtfsvpidafvsmtdykyvVMRV--AMQRDGIPVSCVNFGNGEVEDYSV 1581
Cdd:pfam20009 2 LAVWIDWNNDG---------------------------------------DMRVrvSSSGGGATDPCGTASDGEVEDYTV 42
|
|
| COG4625 |
COG4625 |
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ... |
575-1079 |
4.10e-04 |
|
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];
Pssm-ID: 443664 [Multi-domain] Cd Length: 900 Bit Score: 45.15 E-value: 4.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 575 TTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVTWNVVAASTPNDGSESLDFSSFPLTVGGTAKIRVSAINNVFY 654
Cdd:COG4625 6 GGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGGGGGG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 655 AIGTAAIDTLPICTTNPPGGVQVSAITQTTATVTWNASYNATYVVQYRVAGTTNWTTFAPAPATNTVTLTGLTAGTHYEV 734
Cdd:COG4625 86 GGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAGGGGG 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 735 RIANVCSGVTGNFSAPTTFMTPYCAATSSNTNLGYISNVTVAAVNSYTmsNNSGANNYTDYSIDATKLITLVRGTANNNI 814
Cdd:COG4625 166 GGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGG--AGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 815 SVSKSWPAALSNKAVSVWIDFNKDGIFDANEIILTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVLRDSNSPGACGNFT 894
Cdd:COG4625 244 GGGGAGGGGGGGGGNGGGGGAGGGGGGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 895 NGEVEDYAVKLIDMqpcTNAAPSNITITNLTPTSANVSWTATAGATYILRYRKTGTTAWTTINPVQPPGNNYTILNLTEQ 974
Cdd:COG4625 324 GGGGGGGGGGAGGG---GGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 975 TQYEVQVATKCNGTEGAFSPSQQFTTPPLSYCPMTGTGTGDYISNVTVTSINPALTAMSNNSVQTNYISYTTPATLITLE 1054
Cdd:COG4625 401 GGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTG 480
|
490 500
....*....|....*....|....*
gi 2754901650 1055 IGSANNKISVSKGWTGTANSGAVTA 1079
Cdd:COG4625 481 NNTYTGTTTVNGGGNYTQSAGSTLA 505
|
|
| COG4935 |
COG4935 |
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ... |
562-1128 |
1.74e-03 |
|
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443962 [Multi-domain] Cd Length: 641 Bit Score: 42.89 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 562 IIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVTWNVVAASTPNDGSESLDFSSFPLTVGGT 641
Cdd:COG4935 4 GGAGSTTGLAAAVLAAAAGTGSAATAEGGAASTATSAAVAGASAAAAAATAVGAGASSLAASAAAAAAAASGAAAGAVDA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 642 AKIRVSAINNVFYAIGTAAIDTLPICTTNPPGGVQVSAITQTTATVTWNASYNATYVVQYRVAGTTNWTTFAPAPATNTV 721
Cdd:COG4935 84 APAAATVVGAALGVVAVAGAGLAATASGAAAGAVAAAANGNTGAGPGSGGTGGGSGGAGAAAAAAALSAAGAAVGVAAVA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 722 TLTGLTAGTHYEVRIANVCSGVTGNFSAPTTFMTPYCAATSSNTNLGYISNVTVAAVNSYTMSNNSGANNYTDYSIDATK 801
Cdd:COG4935 164 GAAGGGGGVGVAAAVGVVLGAGLVADGGNGGGGAVAGGAAGGGGGGGGGGGLGGAAGGGGAGLAAAGGGGGGAAAAAAAG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 802 LITLVRGTANNNISVSKSWPAALSNKAVSVWIDFNKDGIFDANEIILTGANNTTTPVTGTFTVPATAYSGPFTTRMRVVL 881
Cdd:COG4935 244 VGGLGAAATAAAADGGGGGGAGAAGAGGSAGAAAGGAGAGVVGAAAGGGDAALGGAVGAAGTGNAAAAAAASAGSGGGGG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 882 RDSNSPGACGNFTNGEVEDYAVKLIDMQPCTNAAPSNITITNLTPTSANVSWTATAGATYILRYRKTGTTAWTTINPVQP 961
Cdd:COG4935 324 SAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAAAGAAAGAAAGAAAGAAAAGGVAS 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 962 PGNNYTILNLTEQTQYEVQVATKCNGTEGAFSPSQQFTTPPLSYCPMTGTGTGDYISNVTVTSINPALTAMSNNSVQTNY 1041
Cdd:COG4935 404 AAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGSTSTGTGSAAGAAGGTTTATSGLASSTTAAA 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 1042 ISYTTPATLITLEIGSANNKISVSKGWTGTANSGAVTAWIDFNRDGLFDNSERIlisPANTTTPVTSTFNVPANAYSGPL 1121
Cdd:COG4935 484 AAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVAI---PDNGPAGVTSTITVSGGGAVEDV 560
|
....*..
gi 2754901650 1122 NTTMRVV 1128
Cdd:COG4935 561 TVTVDIT 567
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
423-475 |
5.55e-03 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 41.57 E-value: 5.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 423 AARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTYTWEEV 475
Cdd:NF038112 1268 APDTVTVLVRNVNRAPVAVAGAPATVDERSTVTLDGSGTDADGDALTYAWTQT 1320
|
|
| COG4733 |
COG4733 |
Phage-related protein, tail protein J [Mobilome: prophages, transposons]; |
599-753 |
5.88e-03 |
|
Phage-related protein, tail protein J [Mobilome: prophages, transposons];
Pssm-ID: 443767 [Multi-domain] Cd Length: 978 Bit Score: 41.47 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 599 VVNVKIDFTTDNGVTWNVVAASTPNDGS----ESLDFSSFPLTV-------GGTAKIRVSAIN-NVFYAIGTAAIDTLPI 666
Cdd:COG4733 450 SVARTVQSVAGRTLTVSTAYSETPEAGAvwafGPDELETQLFRVvsieeneDGTYTITAVQHApEKYAAIDAGAFDDVPP 529
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 667 ctTNPPGGVQVS--------AITQTTATVTWNASYNAT-YVVQYRvAGTTNWTTfAPAPATNTVTLTGLTAGThYEVRI- 736
Cdd:COG4733 530 --QWPPVNVTTSeslsvvaqGTAVTTLTVSWDAPAGAVaYEVEWR-RDDGNWVS-VPRTSGTSFEVPGIYAGD-YEVRVr 604
|
170
....*....|....*..
gi 2754901650 737 ANVCSGVTGNFSAPTTF 753
Cdd:COG4733 605 AINALGVSSAWAASSET 621
|
|
| Pur_ac_phosph_N |
pfam16656 |
Purple acid Phosphatase, N-terminal domain; This domain is found at the N-terminus of Purple ... |
916-1000 |
7.20e-03 |
|
Purple acid Phosphatase, N-terminal domain; This domain is found at the N-terminus of Purple acid phosphatase proteins.
Pssm-ID: 465220 [Multi-domain] Cd Length: 93 Bit Score: 37.39 E-value: 7.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 916 PSNITITNL-TPTSANVSW-TATAGATYILRYRKTG----------TTAWTTINPVQPPGNNYTILNLTEQTQYEVQVAT 983
Cdd:pfam16656 1 PEQVHLSLTgDSTSMTVSWvTPSAVTSPVVQYGTSSsaltstatatSSTYTTGDGGTGYIHRATLTGLEPGTTYYYRVGD 80
|
90
....*....|....*..
gi 2754901650 984 KcngtEGAFSPSQQFTT 1000
Cdd:pfam16656 81 D----NGGWSEVYSFTT 93
|
|
| myxo_dep_M36 |
NF038112 |
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family ... |
423-475 |
8.38e-03 |
|
myxosortase-dependent M36 family metallopeptidase; Members of this bacterial protein family have an M36 family metallopeptidase domain, like fungalysin (see PF02128), and a C-terminal MYXO-CTERM domain (see TIGR03901), suggesting processing and surface-anchoring by the still-unknown putative transpeptidase, myxosortase. Members of this family include MXAN_3564 (mepA), part of the effector cargo of outer membrane vesicles that the species produces in large numbers during predation on other microbes.
Pssm-ID: 468355 [Multi-domain] Cd Length: 1597 Bit Score: 41.18 E-value: 8.38e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 2754901650 423 AARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTYTWEEV 475
Cdd:NF038112 1455 ADVTVTVTVRNVNRAPVAHAGESITVDEGSTVTLDASATDPDGDTLTYAWTQV 1507
|
|
| COG4935 |
COG4935 |
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases ... |
311-780 |
9.15e-03 |
|
Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443962 [Multi-domain] Cd Length: 641 Bit Score: 40.57 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 311 VCLDPGGSHPSTGAGKGSGITSPSNGIPQGDTFDIDFVAHEMGHQLGGNHTFSYQNQGAPVQMEPGSGTTIMAYAGVANS 390
Cdd:COG4935 82 DAAPAAATVVGAALGVVAVAGAGLAATASGAAAGAVAAAANGNTGAGPGSGGTGGGSGGAGAAAAAAALSAAGAAVGVAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 391 NLAPPPGTTFDIQPNSDAYFFKGSIDQVQEVLAARTCDVETPTTNTPPVIASLPTYNIPKGTAFVLTASATDAENDAMTY 470
Cdd:COG4935 162 VAGAAGGGGGVGVAAAVGVVLGAGLVADGGNGGGGAVAGGAAGGGGGGGGGGGLGGAAGGGGAGLAAAGGGGGGAAAAAA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 471 TWEeVDLMTTSINSGNLGNTDGGASFRSVIPSANPTRYFPRLSSVLAGVLNNSNNLWEAVSTVPRTTKFAVTVRDNSPIA 550
Cdd:COG4935 242 AGV-GGLGAAATAAAADGGGGGGAGAAGAGGSAGAAAGGAGAGVVGAAAGGGDAALGGAVGAAGTGNAAAAAAASAGSGG 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 551 NQQQTQSAIQTIIVGNNGPFKVNPTTIYNNGPTSVTWDVVSTNAAPYNVVNVKIDFTTDNGVTWNVVAASTPNDGSESLD 630
Cdd:COG4935 321 GGGSAAAAGAAAAAAAAAAGAAAGVSGAASVVAGASGGGAGTAAAAGGGAAAAAAGGAAAAGAAAGAAAGAAAGAAAAGG 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 631 FSSFPLTVGGTAKIRVSAINNVFYAIGTAAIDTLPICTTNPPGGVQVSAITQTTATVTWNASYNATYVVQYRVAGTTNWT 710
Cdd:COG4935 401 VASAAGAVGAGTAAGASATAAVSTGAASGSSTTSSTGTTATATGLGGGADAGSTSTGTGSAAGAAGGTTTATSGLASSTT 480
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2754901650 711 TFAPAPATNTVTLTGLTAGTHYEVRIANVCSGVTGNFSAPTTFMTPYCAATSSNTNlgyISNVTVAAVNS 780
Cdd:COG4935 481 AAAAAAAAGLATTAAVAAGAAGAAAAAATAASVGGATGAAGTTNSTATFSNTTDVA---IPDNGPAGVTS 547
|
|
| |
