NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2775719020|ref|WP_367635270|]
View 

transposase, partial [Acetobacter oryzifermentans]

Protein Classification

transposase( domain architecture ID 1000873)

IS110 family transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803|GO:0003677|GO:0006313
PubMed:  16381877|10217489

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3547 super family cl34632
Transposase [Mobilome: prophages, transposons];
1-93 1.04e-35

Transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3547:

Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 123.49  E-value: 1.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775719020   1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQIRTLLVLGATAMLHrahkWDS 80
Cdd:COG3547   225 LSIPGIGPITAATLLAEIGDIGRFRSARQLAAYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALR----HNP 300

                          90
                  ....*....|...
gi 2775719020  81 AAGQWLCELMARR 93
Cdd:COG3547   301 RLKAWYQRLLAEG 313
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-93 1.04e-35

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 123.49  E-value: 1.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775719020   1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQIRTLLVLGATAMLHrahkWDS 80
Cdd:COG3547   225 LSIPGIGPITAATLLAEIGDIGRFRSARQLAAYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALR----HNP 300

                          90
                  ....*....|...
gi 2775719020  81 AAGQWLCELMARR 93
Cdd:COG3547   301 RLKAWYQRLLAEG 313
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 1-93 1.29e-31

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 112.81  E-value: 1.29e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775719020   1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQ-IRTLLVLGATAMLHRAHKW- 78
Cdd:NF033542  223 MSIPGIGPITAAALLAEVGDIRRFKSARQFAAYAGLVPRQYSSGGKVRLGRISKRGNRRlRRTLLVAAARAVRRRNPASr 302

                          90
                  ....*....|....*..
gi 2775719020  79 --DSAAGQWLCELMARR 93
Cdd:NF033542  303 afYDRLRAWGRRLAKRK 319
Transposase_20 pfam02371
Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of ...
 1-74 3.12e-27

Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.


Pssm-ID: 426743 [Multi-domain]  Cd Length: 86  Bit Score: 94.93  E-value: 3.12e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2775719020  1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQIRTLLVLGATAMLHR 74
Cdd:pfam02371  4 MSIPGIGPVTAAALLAEIGDLTRFPSAKQLAAYAGLAPVERSSGGKVRRGRISKRGNRRLRRALYEAALAAIRH 77
 
Name Accession Description Interval E-value
COG3547 COG3547
Transposase [Mobilome: prophages, transposons];
1-93 1.04e-35

Transposase [Mobilome: prophages, transposons];


Pssm-ID: 442768 [Multi-domain]  Cd Length: 349  Bit Score: 123.49  E-value: 1.04e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775719020   1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQIRTLLVLGATAMLHrahkWDS 80
Cdd:COG3547   225 LSIPGIGPITAATLLAEIGDIGRFRSARQLAAYAGLVPRQHSSGGKRGRGRISKRGNRYLRRALYEAALSALR----HNP 300

                          90
                  ....*....|...
gi 2775719020  81 AAGQWLCELMARR 93
Cdd:COG3547   301 RLKAWYQRLLAEG 313
transpos_IS110 NF033542
IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type ...
 1-93 1.29e-31

IS110 family transposase; Proteins of this family are DEDD (Asp, Glu, Asp, Asp) type transposases, which are encoded by the IS110 family elements.


Pssm-ID: 468073 [Multi-domain]  Cd Length: 345  Bit Score: 112.81  E-value: 1.29e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2775719020   1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQ-IRTLLVLGATAMLHRAHKW- 78
Cdd:NF033542  223 MSIPGIGPITAAALLAEVGDIRRFKSARQFAAYAGLVPRQYSSGGKVRLGRISKRGNRRlRRTLLVAAARAVRRRNPASr 302

                          90
                  ....*....|....*..
gi 2775719020  79 --DSAAGQWLCELMARR 93
Cdd:NF033542  303 afYDRLRAWGRRLAKRK 319
Transposase_20 pfam02371
Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of ...
 1-74 3.12e-27

Transposase IS116/IS110/IS902 family; Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.


Pssm-ID: 426743 [Multi-domain]  Cd Length: 86  Bit Score: 94.93  E-value: 3.12e-27
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2775719020  1 MTIPGVGPITASLIVASVADIGSFASARHFAAWLGLVPRQHSTGGKTRLGRITKTGNRQIRTLLVLGATAMLHR 74
Cdd:pfam02371  4 MSIPGIGPVTAAALLAEIGDLTRFPSAKQLAAYAGLAPVERSSGGKVRRGRISKRGNRRLRRALYEAALAAIRH 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH