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Conserved domains on  [gi|2689249576|gb|WWP57363|]
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ATP synthase F0 subunit 6 (mitochondrion) [Corvus corax]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009577)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.33e-107

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177190  Cd Length: 227  Bit Score: 308.73  E-value: 1.33e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.33e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 308.73  E-value: 1.33e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 1.18e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 151.20  E-value: 1.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  19 LILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  99 LSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2689249576 179 TAALIStmPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 2.95e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 119.81  E-value: 2.95e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  66 GHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILI 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2689249576 146 ETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALIStmpFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP-synt_A pfam00119
ATP synthase A chain;
65-224 2.06e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 106.42  E-value: 2.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  65 KGHKWALILTSLMIFLL---FTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSIS-LGHLLPEGTPTPLIP 140
Cdd:pfam00119  53 KGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVP 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 141 ALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLS 220
Cdd:pfam00119 133 LLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTA 212


                  ....
gi 2689249576 221 LYLQ 224
Cdd:pfam00119 213 VYIS 216
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 1.02e-17

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.19  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  49 WSINLITKQLMMPLSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSIS-LG 127
Cdd:COG0356    37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 128 HLLPEGTPtPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAAListmpFISLLTLLVLFLLTILEVAV 207
Cdd:COG0356   117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFL-----LLGVLSLLLPVAWTAFELLV 190

                         170
                  ....*....|....*...
gi 2689249576 208 AMIQAYVFVLLLSLYLQE 225
Cdd:COG0356   191 GFLQAYIFTMLTAVYISL 208
 
Name Accession Description Interval E-value
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-227 1.33e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 308.73  E-value: 1.33e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00132    1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00132   81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00132  161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-227 2.43e-107

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 308.29  E-value: 2.43e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00120    1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00120   81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00120  161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQENT 227
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-227 5.89e-104

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 299.57  E-value: 5.89e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00073    1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00073   81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00073  161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQENV 227
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 2.16e-83

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 247.55  E-value: 2.16e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00179    1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00179   81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00179  161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.35e-77

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 232.15  E-value: 2.35e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPALLLPTqNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFL 80
Cdd:MTH00101    1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPT-PNRLINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  81 LFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVR 160
Cdd:MTH00101   80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2689249576 161 LTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00101  160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 19-227 1.18e-45

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 151.20  E-value: 1.18e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  19 LILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQ 98
Cdd:TIGR01131  20 LILLLSLLIFLISSSLSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFILISNLLGLIPYSFTPTSH 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  99 LSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTA 178
Cdd:TIGR01131 100 LSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVRLFANISAGHLLLTLLSGL 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2689249576 179 TAALIStmPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:TIGR01131 180 LFSLMS--SAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 1-227 1.86e-45

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 150.89  E-value: 1.86e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLILIAMTFPAL-LLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIF 79
Cdd:MTH00035    3 INNSIFGQFSPDTILFIPLTLLSSVIALSwLFFINPTNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFIL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  80 LLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGV 159
Cdd:MTH00035   83 ILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGL 162

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2689249576 160 RLTANLTAGHLLIQLISTATAALISTmPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00035  163 RLAANLTAGHLLIFLLSTAIWELSNS-PLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 5.55e-39

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 134.14  E-value: 5.55e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNL-SFFDQFSSPSLlgiPLILIAMTFPALLLPtqNNRW-ITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMI 78
Cdd:MTH00157    3 TNLfSIFDPSTSFNL---SLNWLSTFLGLLFIP--SSFWlIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFS 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  79 FLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALG 158
Cdd:MTH00157   78 FILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLA 157

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 159 VRLTANLTAGHLLIQLISTATAALISTMPFISlltLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00157  158 VRLAANMIAGHLLLTLLGNTGPSLSSMILSIL---ILIQILLLILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-226 2.79e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 129.77  E-value: 2.79e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIPLIL---IAMTFPALLLPTQNNRWITDRLSTLQSWSiNLITKQLMMPLSNKGHKWALILTSLM 77
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISlswITLLLFLLLMPSSVWFCPSKLQVFMLMFS-TFLPEMILRSNGSYILGSASIIISLF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  78 IFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLAL 157
Cdd:MTH00176   80 ILVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTL 159

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2689249576 158 GVRLTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQEN 226
Cdd:MTH00176  160 AVRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEH 228
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 4-225 7.25e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 123.82  E-value: 7.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   4 SFFDQFSSPSLLGIPLILIAMTFPALLLPTQNnRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFLLFT 83
Cdd:MTH00173    7 SSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSV-WVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFLFLISL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  84 NLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTA 163
Cdd:MTH00173   86 NLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLTVRLLA 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2689249576 164 NLTAGHLLIQLI-STATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00173  166 NISAGHIVLTLIgNYLSSSLFSSSVVSLLLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-224 2.95e-34

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 119.81  E-value: 2.95e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  66 GHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILI 145
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2689249576 146 ETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALIStmpFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQ 224
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLS---SVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 18-222 2.13e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 117.53  E-value: 2.13e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  18 PLILIAMTFPALLLPtQNNRWIT-DRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPT 96
Cdd:MTH00005   22 STAFWAFNFSIILLL-SSSFWITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTS 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  97 TQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLIS 176
Cdd:MTH00005  101 SHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIG 180

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2689249576 177 TATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLY 222
Cdd:MTH00005  181 IYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLY 226
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 5.08e-30

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 111.29  E-value: 5.08e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGI--PLILIAMTFPALLLPTQNNRWITDRLSTLQSWSINLITKQLMMPLSNKGHKWALILTSLMI 78
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  79 FLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIETTSLLIRPLALG 158
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2689249576 159 VRLTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQENI 227
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP-synt_A pfam00119
ATP synthase A chain;
65-224 2.06e-28

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 106.42  E-value: 2.06e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  65 KGHKWALILTSLMIFLL---FTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSIS-LGHLLPEGTPTPLIP 140
Cdd:pfam00119  53 KGRKFFPLLLTLFFFILvsnLLGLIPKSPGGFTVTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVP 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 141 ALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLS 220
Cdd:pfam00119 133 LLLPIEIISEFARPVSLSLRLFGNMLAGHLLLLLLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTA 212


                  ....
gi 2689249576 221 LYLQ 224
Cdd:pfam00119 213 VYIS 216
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-227 5.48e-25

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 98.16  E-value: 5.48e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576   1 MNLSFFDQFSSPSLLGIP----------------LILIAMTFPALLlptQNNRWITDRLSTLQSWSINLITKQLMMPLSN 64
Cdd:MTH00175    1 MLAAYFDQFNIIRLITIQaflgdwlvtftnssmmMVLAVIIFWLLL---KGDKLIPNRWQSIMELIYLNIRSVVHDNLGK 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  65 KGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALIL 144
Cdd:MTH00175   78 SGQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVL 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 145 IETTSLLIRPLALGVRLTANLTAGHLLIQLIST-ATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYL 223
Cdd:MTH00175  158 IETLSYLIRAISLGVRLAANISAGHLLFAILSGfAFNMLSNGLIILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237


                  ....
gi 2689249576 224 QENI 227
Cdd:MTH00175  238 GDTI 241
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 49-225 1.02e-17

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 78.19  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  49 WSINLITKQLMMPLSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSIS-LG 127
Cdd:COG0356    37 MLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLK 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 128 HLLPEGTPtPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAAListmpFISLLTLLVLFLLTILEVAV 207
Cdd:COG0356   117 HLFFPPFP-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFL-----LLGVLSLLLPVAWTAFELLV 190

                         170
                  ....*....|....*...
gi 2689249576 208 AMIQAYVFVLLLSLYLQE 225
Cdd:COG0356   191 GFLQAYIFTMLTAVYISL 208
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 62-227 1.27e-17

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 78.83  E-value: 1.27e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  62 LSNKGHKWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPA 141
Cdd:MTH00174   83 LGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPL 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 142 LILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTATAALISTMPFI-SLLTLLVLFLLTILEVAVAMIQAYVFVLLLS 220
Cdd:MTH00174  163 LTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIgSFVPFAILIFVTILEMAVAIIQAYVFTLLTI 242


                  ....*..
gi 2689249576 221 LYLQENI 227
Cdd:MTH00174  243 VYLRDTV 249
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 64-225 3.47e-16

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 74.45  E-value: 3.47e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  64 NKGHKWALILTSLMIFLLFTNLLGLLP-YTFTPTTQLSMNLALAIPLWLATLLTGLRNQpsiSLGHLLPEGTPTPlIPAL 142
Cdd:PRK05815   67 GKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTADINVTLALALIVFVLVIYYGIKKK---GLGGYLKEFYLQP-HPLL 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 143 ILIETTSLLIRPLALGVRLTANLTAGHLLIQLIstatAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLY 222
Cdd:PRK05815  143 LPIEIISEFSRPISLSLRLFGNMLAGELILALI----ALLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVY 218


                  ...
gi 2689249576 223 LQE 225
Cdd:PRK05815  219 ISM 221
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 90-225 1.71e-11

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 61.15  E-value: 1.71e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  90 PYTFTPTTQLSMNLALAIPLWLATLLTGLRNqpSISLGHLLPEGTPTPLIP-ALILIETTSLLIRPLALGVRLTANLTAG 168
Cdd:MTH00087   72 PYSFSPCGMVEFTFLYALVAWLSTFLSFLSK--SEKFSVYLSKGSDSFLKTfSMLFVEIVSELSRPLALTLRLTVNLMVG 149

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2689249576 169 HLLIQLIStataalistmpFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYLQE 225
Cdd:MTH00087  150 HLISSLLN-----------FLGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 63-223 1.53e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 53.98  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  63 SNKGH---KWALILTSLMIFLLFTNLLGLLPYTFTPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLI 139
Cdd:PRK13419  161 SNIGHgyeKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHWSLW 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576 140 PALILIETTSLLIRPLALGVRLTANLTAGHLLIQ-------LISTATAALISTMPFislltllvLFLLTILEVAVAMIQA 212
Cdd:PRK13419  241 IIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILslifisfILKSYIVAVAVSVPF--------AIFIYLLELFVAFLQA 312

                         170
                  ....*....|.
gi 2689249576 213 YVFVLLLSLYL 223
Cdd:PRK13419  313 YIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 2.63e-08

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 53.36  E-value: 2.63e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2689249576  94 TPTTQLSMNLALAIPLWLATLLTGLRNQPSISLGHLLPEGTPTPLIPALILIE-TTSLLIRPLALGVRLTANLTAGHLLI 172
Cdd:PRK13417  217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVII 296

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2689249576 173 qlISTATAALISTMPFISLLTLLVLFLLTILEVAVAMIQAYVFVLLLSLYL 223
Cdd:PRK13417  297 --LALMGFIFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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