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Conserved domains on  [gi|2742832142|gb|XBS26173|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Chordeiles pusillus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-326 1.72e-157

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.88  E-value: 1.72e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   6 SLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH 85
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIAILTSM 325
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTL 331


                  .
gi 2742832142 326 S 326
Cdd:MTH00112  332 S 332
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-326 1.72e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.88  E-value: 1.72e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   6 SLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH 85
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIAILTSM 325
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTL 331


                  .
gi 2742832142 326 S 326
Cdd:MTH00112  332 S 332
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-293 5.42e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.85  E-value: 5.42e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   8 LLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TS------------CLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK---FPPITILFLT-----SNSLNPM 146
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEafpglAADWQLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYL--YTTMTTTIFLT-LNTTKTTKL 221
Cdd:COG1007   272 LAV-LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAViLLLSRKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2742832142 222 STMMTSW----TKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYY 293
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-291 1.14e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.57  E-value: 1.14e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   8 LLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TSC------------LLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK---FPPITILFLT-----SNSLNPM 146
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTL--MTFYL--YTTMTTTIFLTLNTTKTT--- 219
Cdd:TIGR01770 272 LAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkde 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2742832142 220 ---KLSTMMTSWTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLA 291
Cdd:TIGR01770 351 wieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 2.81e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 2.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  17 SNHWAMAWAGLEINTLAAIPLI-SKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  85 HPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMT-TALLLSTMMKFPPITI-----LFLTSNSLNPMLMATMAIASAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 159 GGWMGLNQTQLRKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKLST-----MMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMliALGAGTIYGIQAAIFHLltHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2742832142 230 KTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 6-326 1.72e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.88  E-value: 1.72e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   6 SLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH 85
Cdd:MTH00112   12 SLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQWDITQLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00112   92 PTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00112  172 QTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLMLTLLSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIAILTSM 325
Cdd:MTH00112  252 AGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTLTATLTTL 331


                  .
gi 2742832142 326 S 326
Cdd:MTH00112  332 S 332
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 3-326 3.42e-126

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 364.51  E-value: 3.42e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   3 LLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQ 82
Cdd:MTH00135    9 LLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQ 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  83 LTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSlNPMLMATMAIASAALGGWM 162
Cdd:MTH00135   89 MSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 163 GLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTL 242
Cdd:MTH00135  168 GLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLIL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 243 LSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTA-TSPQIAI 321
Cdd:MTH00135  248 LSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTqLTLPLAI 327


                  ....*
gi 2742832142 322 LTSMS 326
Cdd:MTH00135  328 STTAT 332
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-326 5.16e-125

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 361.55  E-value: 5.16e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   1 SNLLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDI 80
Cdd:MTH00070    7 SILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  81 TQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGG 160
Cdd:MTH00070   87 MNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 161 WMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALML 240
Cdd:MTH00070  167 WGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMML 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 241 TLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIA 320
Cdd:MTH00070  247 TLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLS 326


                  ....*.
gi 2742832142 321 ILTSMS 326
Cdd:MTH00070  327 LTIILS 332
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 6-326 1.02e-109

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 322.95  E-value: 1.02e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   6 SLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH 85
Cdd:MTH00105   12 TLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKLTN 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00105   92 PTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGGLN 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00105  172 QTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWH-TRTATSPQIAILTS 324
Cdd:MTH00105  252 GGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQfENTKPMTLLPTLII 331


                  ..
gi 2742832142 325 MS 326
Cdd:MTH00105  332 LS 333
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-326 1.76e-90

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 273.77  E-value: 1.76e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   3 LLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQ 82
Cdd:MTH00200    9 FILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGISE 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  83 LTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWM 162
Cdd:MTH00200   89 MLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 163 GLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTL 242
Cdd:MTH00200  169 GLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 243 LSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIAIL 322
Cdd:MTH00200  249 LSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGLL 328


                  ....
gi 2742832142 323 TSMS 326
Cdd:MTH00200  329 LLLS 332
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-326 4.80e-84

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 257.55  E-value: 4.80e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   3 LLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQ 82
Cdd:MTH00041    9 LITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSING 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  83 LTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWM 162
Cdd:MTH00041   89 PLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWG 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 163 GLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTL 242
Cdd:MTH00041  169 GLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSI 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 243 LSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTITLPPNSTNHTKQWHTRTATSPQIAIL 322
Cdd:MTH00041  249 LSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGVIL 328


                  ....
gi 2742832142 323 TSMS 326
Cdd:MTH00041  329 SILS 332
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 7-294 7.76e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 192.35  E-value: 7.76e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGqwditqLTHP 86
Cdd:MTH00160   14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLM------LFNN 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILfltSNSLNPMLMATMAIASAALGGWMGLNQ 166
Cdd:MTH00160   88 ISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIGAIGGLNQ 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 167 TQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSLA 246
Cdd:MTH00160  165 TSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLG 244

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2742832142 247 GLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYS 294
Cdd:MTH00160  245 GLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS 292
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-296 4.88e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 177.00  E-value: 4.88e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITqlthp 86
Cdd:MTH00144   13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 tscLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPI-TILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00144   88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLN 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLStMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00144  165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMK-DLGSLKPSYKTGLSIISLLLSL 243

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTI 296
Cdd:MTH00144  244 GGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-326 2.65e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 167.26  E-value: 2.65e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   6 SLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMnawltgQWDITQLTH 85
Cdd:MTH00011   14 TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLK 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIASAALGGWMGLN 165
Cdd:MTH00011   88 NITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLGGMN 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 166 QTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSL 245
Cdd:MTH00011  168 QTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSL 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 246 AGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAyYSTITLPPNSTNHTKqwhtrTATSPQIAILTSM 325
Cdd:MTH00011  248 GGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLI-FNFMYLSPTFSSLKS-----APYEPKTKILISM 321


                  .
gi 2742832142 326 S 326
Cdd:MTH00011  322 C 322
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 3-296 8.56e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.12  E-value: 8.56e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   3 LLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAwltgqwdITQ 82
Cdd:MTH00197    3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  83 LTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILflTSNSLNPMLMATMAIASAALGGWM 162
Cdd:MTH00197   76 YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGIG 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 163 GLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTL 242
Cdd:MTH00197  154 GMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSF 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2742832142 243 LSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYSTI 296
Cdd:MTH00197  234 LSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-293 5.42e-34

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 129.85  E-value: 5.42e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   8 LLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIAAA 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TS------------CLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK---FPPITILFLT-----SNSLNPM 146
Cdd:COG1007   192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAALLRLLVEafpglAADWQLL 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYL--YTTMTTTIFLT-LNTTKTTKL 221
Cdd:COG1007   272 LAV-LAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAViLLLSRKGGE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2742832142 222 STMMTSW----TKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYY 293
Cdd:COG1007   351 AEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKA 426
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 7-290 1.09e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 113.59  E-value: 1.09e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLI-SKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDI----- 80
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinl 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  81 --------TQLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATma 152
Cdd:MTH00196   82 vlnsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGG-- 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 153 IASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMT--FYLYTTMTTTIFLTLNTTKTTKLSTMMTSWT- 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFESIQAslVYLFIYIIMSICVFSIILALNVYKNLIIEFSg 239

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2742832142 230 ---KTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:MTH00196  240 lsrRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-293 1.22e-28

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 114.92  E-value: 1.22e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   8 LLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TS------------CLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK---FPPITILFLT-----SNSLNPM 146
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLRLLVVafgglSEDWQQV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKL- 221
Cdd:PRK05777  273 LAI-IAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLRRKGGe 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2742832142 222 STMMTSWT----KTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYY 293
Cdd:PRK05777  352 AESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKL 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-291 1.14e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.57  E-value: 1.14e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   8 LLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TSC------------LLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK---FPPITILFLT-----SNSLNPM 146
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYilfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTL--MTFYL--YTTMTTTIFLTLNTTKTT--- 219
Cdd:TIGR01770 272 LAI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYkde 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2742832142 220 ---KLSTMMTSWTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLA 291
Cdd:TIGR01770 351 wieYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 17-262 2.81e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 2.81e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  17 SNHWAMAWAGLEINTLAAIPLI-SKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQL-----------T 84
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  85 HPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMT-TALLLSTMMKFPPITI-----LFLTSNSLNPMLMATMAIASAAL 158
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLirrslLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 159 GGWMGLNQTQLRKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKLST-----MMTSWT 229
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMliALGAGTIYGIQAAIFHLltHGLFSAGLFLCAGSVIYRRVHTrnirdYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2742832142 230 KTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 7-290 1.55e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 100.48  E-value: 1.55e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDI----T 81
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  82 QLTHPTSCLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMAtmAIASAALGGW 161
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 162 MGLNQTQLRKVLAFSSIAHLGWMALIIMYNP----KLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWT--KTPTLN 235
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLsrKNPVIA 343

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2742832142 236 AALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 7-290 1.31e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 91.75  E-value: 1.31e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH- 85
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 ---------PTSCLLLTTAIAMKLGLVPFHFWFPEVL-QGSSMTTALLLSTMMK-------------FPPITILFLTsns 142
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKvgvyailrvltllFGADPALFLG--- 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 143 lnpMLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALII-MYNPKLTLMTFYLY---TTMTTTIFLTLNTTKT 218
Cdd:COG0651   273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLlnhALAKALLFLAAGAIER 349

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2742832142 219 TKLSTMMTS----WTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:COG0651   350 ATGTRDLDKlgglGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-290 1.02e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 83.75  E-value: 1.02e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   9 LGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAV---------EASIKYFLVQASASAILLLSSTMNAWLTGQ-- 77
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  78 --WDITQLTHPTS----------CLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFppITILFLTSNSLNP 145
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 146 MLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYttmtTTIFLTLNTTKTTKLSTMM 225
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTY----AVTYLVSALASFTVICTLE 432

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 226 TSWTKTPT-----------------------------LNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATII 276
Cdd:MTH00198  433 EFGTRTPTsrqrdgsfgnynlvrrlvdltilsrgqpyIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIY 512

                         330       340
                  ....*....|....*....|.
gi 2742832142 277 AMLSLLGL-------FFYLRL 290
Cdd:MTH00198  513 YLVALFAIictcisaFYYIRI 533
ndhB CHL00049
NADH dehydrogenase subunit 2
 45-257 9.16e-15

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 74.66  E-value: 9.16e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  45 RAVEASIKYFLVQASASAILLLSSTmnaWLTGQ-------WDI------TQLTHPTSCLL----LTTAIAMKLGLVPFHF 107
Cdd:CHL00049  159 RSNEATMKYLLMGGASSSILVYGFS---WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQ 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 108 WFPEVLQGS-----------SMTTALLLSTMMkfppITILFLTSNSLNPMLMATMAIASAALGGWMGLNQTQLRKVLAFS 176
Cdd:CHL00049  236 WTPDVYEGSptpvvaflsvtSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYS 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 177 SIAHLGWMAL-IIMYNPK------LTLMTFYLYTT--MTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSLAG 247
Cdd:CHL00049  312 SIGQIGYVIIgIIVGDSNdgyasmITYMLFYIFMNlgTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGG 391

                         250
                  ....*....|
gi 2742832142 248 LPPLTGFLPK 257
Cdd:CHL00049  392 IPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
44-257 1.26e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 71.24  E-value: 1.26e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  44 PRAVEASIKYFLVQASASAILLLSSTMNAWLTGqwDITQL--------THPTSCLLLT-----TAIAMKLGLVPFHFWFP 110
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYGSSLLYGLSG--GSTQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWTP 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 111 EVLQGSSMTTALLLSTMMKFP----PITILFLTSNSLNP---MLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGW 183
Cdd:PRK02504  235 DVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGF 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 184 --MALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKLSTMMTSWT----KTPTLNAALMLTLLSLAGLPPLTGFL 255
Cdd:PRK02504  315 vmIGLVAGTEAGYASMVFYLlaYLFMNLGAFACVILFSLRTGTDQISDYAglyqKDPLLTLGLSLCLLSLGGIPPLAGFF 394


                  ..
gi 2742832142 256 PK 257
Cdd:PRK02504  395 GK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-293 6.08e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 66.06  E-value: 6.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  27 LEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH--PTSCLLLT------TAIAM 98
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  99 KLGLVPFHFWFPEVLQGSSMTTALLLSTM-----------MKFPPITILFLTSNSLNPMLMATmAIASAALGGWMGLNQT 167
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPAAPPVVTALLSGLvtkvavyalirIYFTVFGGDFRFALGLGWLLAVL-ALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 168 QLRKVLAFSSIAHLGWMALIIMYNPKLTLM--TFYL--YTTMTTTIFLTLNTTKTTKLSTMMTSWT----KTPTLNAALM 239
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSglgrRMPLTAAAFA 373

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2742832142 240 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYY 293
Cdd:PRK08375  374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYR 427
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 43-186 1.72e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.55  E-value: 1.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  43 HPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQW--DITQLTH---PTS-----CLLLTTAIAMKLGLVPFHFWFPEV 112
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplPLTaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 113 L-QGSSMTTALLLSTMMKFP-------PITILFLTSNSLNPmLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM 184
Cdd:COG1008   236 HvEAPTAGSVLLAGVLLKMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 2742832142 185 AL 186
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-260 3.39e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 57.80  E-value: 3.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  27 LEINTLAAIPLIS-KSHHPRAVEASIKYFLVQASASAILLLSSTMnawLTGQWDI-------------TQLTHPTSCLLL 92
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTlnmaylavkmsenPTVVAKIALALF 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  93 TTAIAMKLGLVPFHFWFPEVLQG--SSMTTALLLSTMMKFPPI-----TILFLTSNSLN-PMLMATMAIASAALGGWMGL 164
Cdd:PRK08376  227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALarvlfSIYGPAINLATvGWVIIILGCLTMFVGVAMAV 306

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 165 NQTQLRKVLAFSSIAHLGWM------ALIIMYNPKLT-------------LMTFYLYTTMTTTIFLTLNTTKTTKLSTMM 225
Cdd:PRK08376  307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2742832142 226 TSWTKT-PTLNAALMLTLLSLAGLPPLTGFLPKWLI 260
Cdd:PRK08376  387 GGLARTmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 7-188 7.31e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.61  E-value: 7.31e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASA------SAILLLSSTMNAWLTGQWDI 80
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  81 TQLTHPT----------SCLLLTTAIAMKLGLVPFHFWFPEV-LQGSSMTTALLLSTMMKFPPITILFLTS--------N 141
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaaE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 2742832142 142 SLNPMLMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALII 188
Cdd:PRK08676  271 QFSNVLIG-LGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 44-286 2.53e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.86  E-value: 2.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  44 PRAVEASIKYFLVQASASAILLLSSTMNAWLTGQW----DITQLTHPTSC-----LLLTTAIAMKLGLVPFHFWFPEV-- 112
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 113 ---LQGSSMTTALLLST----MMKFpPITILFLTSNSLNPMLMAtMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM- 184
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAPVLAA-LGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVl 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 185 -------------ALIIMYNPKLTLMTFYLyttmttTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLTLLSLAGLPPL 251
Cdd:TIGR01972 310 lgifsfnelgisgAVFQMISHGLITAALFL------LVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGT 383

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2742832142 252 TGFLPKWLIIQELTKqemtaAATIIAMLSLLGLFF 286
Cdd:TIGR01972 384 SGFVGEFLILLGSFK-----VNPVVAFLAALGIVL 413
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
28-302 6.38e-07

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 50.80  E-value: 6.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  28 EINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQ-----LTHPTS------CLLLTTAI 96
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSpviyggLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  97 AMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITI------LFLTSNSLNPMLMATMAIASAA--LGGWMGLNQTQ 168
Cdd:PRK06277  210 LYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSAQGVLIALSVLAmvFGVVMALLQTD 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 169 LRKVLAFSSIAHLGWMALIIMYNPKLTLmTFYLYTTMTTTIFLTLNTTKTTKLSTMmtswTKTPTLNA-----------A 237
Cdd:PRK06277  290 YKRLLAYHAISQGGYVAAGLALGTPLGI-VAGIFHAINHVIYKSALFLGAGIVSYR----TKTSNLRKlggllpvmpvvA 364

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2742832142 238 LMLTL--LSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSlLGLFFYLRLAYYStITLPPNS 302
Cdd:PRK06277  365 FMVLCakLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVS-IGTFVSMMKAFYL-IYLKPKP 429
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 28-292 1.46e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  28 EINTLAAIPLISKSHHpRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDIT-------QLTHPTSC----LLLTTAI 96
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFAlivfLFLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  97 AMKLGLVPFHFWFPE-----------VLQG--SSMTTALLLSTMMKFPPITIL-----FLTSNSLNPMLMATMAIaSAAL 158
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGqlSKLGAYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLGNI-SIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 159 GGWMGLNQTQLRKVLAFSSIAHLGW--MALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKLSTMMTSW----TK 230
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVfnHALFKGLFFLIFAAVIYRTGTTKISEMggliEK 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2742832142 231 TPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAY 292
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 27-282 7.90e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 47.28  E-value: 7.90e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  27 LEINTLAAIPLISKSHHPRAVEASIKYFLVQASAS------AILLLSSTMNAWLTGQWDITQLTHPTSCLLLTTAIAMKL 100
Cdd:PRK06525  142 FEITGLCSWALISYYQSPKALRSALKALLITHIGSlglylaAATLFLQTGTFALSALSGLHGSLKYLVFLGILFAAWGKS 221

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 101 GLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNP------MLMATMAIASAALGGWMGLNQTQLRKVLA 174
Cdd:PRK06525  222 AQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARAIQSMGPiphvigYVGAVMAIVTLLYGFLMYLPQQDMKRLLA 301

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 175 FSSIAHLGWMALIIMY---NPKLTLM--TFYL--YTTMTTTIFLTLNTTKTTKLSTMMTSW----TKTPTLNAALMLTLL 243
Cdd:PRK06525  302 YSTITQLGYMFFGLSLailGSRLALEgsIAYIfnHAFAKSLFFLVAGALSYSCGTRLLPRLrgvlKKLPLVGVGFCVAAL 381

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2742832142 244 SLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLL 282
Cdd:PRK06525  382 AITGVPPFNGFFSKFPIFAAGFELSVEYWILLPAMVLLL 420
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
54-186 8.24e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.39  E-value: 8.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  54 FLVQASASAILLLSSTMN-AWLTG-------QWDITQLTHPTSCLLLT---TAIAMKLGLVPFHFWFPEV-LQGSSMTTA 121
Cdd:PRK06473  162 FLLYTAISGILILVSFLGlVWLSGassfdyePLRSHTLPLSTQLLLLApilVGFGIKIPLVPFHTWLPDAhVEASTPVSV 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2742832142 122 LLLSTMMKFPPITIL------FLTSNSLNPMLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMAL 186
Cdd:PRK06473  242 LLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
28-287 1.25e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 46.48  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  28 EINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQL-----------THPTSCLLLTTAI 96
Cdd:PRK12663  138 EVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAF 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  97 AMKLGLVPFhFWFPEVLQGSSMTTALLLSTMMK-------FPPITILFLTSNSLNPMLMATMAIASAALGGWMGLNQTQL 169
Cdd:PRK12663  218 GMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDI 296

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 170 RKVLAFSSIAHLGWM--ALIIMYNPKLTLMTFYLY------TTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTLNAALMLT 241
Cdd:PRK12663  297 RRIAGYQVISSIGFIllGLALGTPAGINGAIFYLVhdmvvkTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLIL 376

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2742832142 242 LLSLAGLPPLTGFLPKWLIIQ-ELTKQEMTAAAT-----IIAMLSLLGLFFY 287
Cdd:PRK12663  377 IFAIGGLPPFSGFWGKVLLVQgALDNGAYILLALmlitsLITMYSLFRIFFL 428
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 42-186 1.50e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.30  E-value: 1.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  42 HHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQL----THPTSCLLLTTAIAM-------KLGLVPFHFWFP 110
Cdd:COG1009   156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLP 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 111 EVLQGSSMTTALLLS-TMMK---------FPpitiLFltsnSLNPMLMATMAI---ASAALGGWMGLNQTQLRKVLAFSS 177
Cdd:COG1009   236 DAMEGPTPVSALLHAaTMVKagvyllarlSP----LF----ALSPVWLTVVAIigaITALFAALIALAQTDIKRVLAYST 307


                  ....*....
gi 2742832142 178 IAHLGWMAL 186
Cdd:COG1009   308 VSQLGYMFL 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 44-188 3.42e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.19  E-value: 3.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  44 PRAVEASIKYFLVQASASAILLLS----STMNAWLTGQWDITQLTHPTSCLLLTT--------AIAMKLGLVPFHFWFPE 111
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 112 VLQ-----GSSMTTALLLST----MMKFPpITILFLTSNSLNPMLMaTMAIASAALGGWMGLNQTQLRKVLAFSSIAHLG 182
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMgaygLLRFS-LPLFPDASHEFAPIII-TLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ....*.
gi 2742832142 183 WMALII 188
Cdd:PRK05846  315 FVTLGI 320
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-265 7.44e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 44.17  E-value: 7.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  27 LEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTH--PTSCLLLTTAIAMKLGLVP 104
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 105 FHFWFPEVLQGSSMTTALLLS---TMMKFPPITILFLTSNSLNPMLmATMAIASAALGGWMGLNQTQLRKVLAFSSIAHL 181
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSgvvVKAGVFPLVRCALDVPGLDLIV-RIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 182 GWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPtlnaaLMLTLLSLAGLPPLTGFLPKWLII 261
Cdd:PRK07234  282 GFILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIP-----LTMASFSIAGFPLLAGFVSKVLTL 356


                  ....
gi 2742832142 262 QELT 265
Cdd:PRK07234  357 KNLL 360
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 49-182 8.99e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.95  E-value: 8.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  49 ASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHPT-----SCLLLTTAIAMKLGLVPFHFWFPEVLQGS-SMTTAL 122
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2742832142 123 LLSTMMKFPPITILFLTSNSLNP-----MLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLG 182
Cdd:PRK08667  243 MSGVMLKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK12650 PRK12650
DUF4040 family protein;
23-188 1.06e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.88  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  23 AWaglEINTLAAIPLISKSHhPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHPTSCL---LLTTAIAM- 98
Cdd:PRK12650  138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  99 -------KLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTS-----NSLNPMLMATMAIASAALGGWMGLNQ 166
Cdd:PRK12650  214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvfhdVAVWNWLLIIVGMITALMGAVFAVQK 293

                         170       180
                  ....*....|....*....|..
gi 2742832142 167 TQLRKVLAFSSIAHLGWMALII 188
Cdd:PRK12650  294 TDLKKLTAYSTVSQLGWIVATI 315
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 3-262 1.37e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 43.38  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   3 LLRSLLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLV------QASASAILL-------LSST 69
Cdd:PRK06458  113 MYQLFLFTMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIIcsvgvaFALFGTILVyanaatvMGDG 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  70 MNAWL-TGQWDITQLTHPTsclLLTTAIAM-------KLGLVPFHFWFPE-----------VLQGSSMTTALLLSTMMKf 130
Cdd:PRK06458  193 EMAILwTELLKHASLLDPT---LMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY- 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 131 ppITILFLTSNSLNPMLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWM--------------ALIIMYNPKLTl 196
Cdd:PRK06458  269 --ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIafalgiggplgifaALLHMLNHSLT- 345

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 197 mtfylyttmTTTIFLTLNTTKTTKLSTMMTS----WTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:PRK06458  346 ---------KSAIFFASGNVLQKYGTRDINVirglLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-290 1.49e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.18  E-value: 1.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  27 LEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQL-----------THPTSCLLLTTA 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  96 IAMKLGLVPFHFWFPEVLQGSSMTTALLLS----TMMKFPPITI--------LFLTSNSLNPMLMaTMAIASAALGGWMG 163
Cdd:PRK12662  219 LFIKAALFPFHKWLIQAYSEAPSFISVFFSgtstKVMIYLIIRIvydvfkanFVFTTLPFNNVFM-ILAALAIVFGSVLA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 164 LNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTK--------TTKLSTMMTSWTKTPTLN 235
Cdd:PRK12662  298 ILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSgsisyhfgTTKLEDCLNLWKSMPKIT 377

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2742832142 236 AALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:PRK12662  378 LAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKI 432
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 103-283 2.76e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 2.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 103 VPFHFWFPEVLQGSSMTTALLLS-TMMKfppITILFLTSnsLNPMLMATMA------IASAA---LGGWMGLNQTQLRKV 172
Cdd:PRK12647  212 FPFHFWLPNAMEAPTPVSAYLHSaTMVK---AGIYLLAR--LNPVLGGTPLwqtilpLFGGLtmlTGALLAVRQTDLKLI 286

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 173 LAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTT----TIFLTLNTTKTTKLSTMMTS----WTKTPTLNAALMLTLLS 244
Cdd:PRK12647  287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFMVAGIIDHETGTRDITKlgglRRAMPITAAAALLAALS 366

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2742832142 245 LAGLPPLTGFLPKWLIIQELTkqEMTAAATIIAMLSLLG 283
Cdd:PRK12647  367 MAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
PRK06591 PRK06591
putative monovalent cation/H+ antiporter subunit D; Reviewed
 15-294 3.62e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235837 [Multi-domain]  Cd Length: 432  Bit Score: 42.08  E-value: 3.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  15 ISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQ----LTHPTSCL 90
Cdd:PRK06591  132 IATNDFFNLYVFIEISALSSYVLIASGNNPKSLIGAFDYLIMGSIGATLILIAIGFLLSITGSLNMTDiaayLQEHTNSR 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  91 LLTTAIA-------MKLGLVPFHFWFPEVLQGSS---------MTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIA 154
Cdd:PRK06591  212 IITIAIGffligaiLKTAFFPMHFWMMRAYNNTAsvilvylagISTIIGIYIIYKFTYIIIGYETIKTAITNFIRPIALA 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 155 SAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIfltlnttKTTKLSTMMTSWTKTPtL 234
Cdd:PRK06591  292 TLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTENGIIILPSLLLADSINKI-------ALFLIDAYNESYKREP-N 363

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 235 NAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRLAYYS 294
Cdd:PRK06591  364 KVLIIIAIICSCGLPISPLFFIKVNILELLLTQNLLLDFIIILLSSVGSLFYHYKMVLLL 423
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 1-264 7.91e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.93  E-value: 7.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   1 SNLLRSLLLGTTITISSNHWAMAWAGLEINTLAA---IPLISKSHHPRAVeasikyFLVQASASAILLLSSTMNAWL-TG 76
Cdd:PRK06459   75 SSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSyvaIALTKKNKRPAFV------FMAFGELSTVLILAGFAWAFIiSG 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  77 QWDITQLTHPTSCLLLTTAIAMKLGLVPFHF--WFPEVLQGSSMTTALLLSTMMK----FPPITILFLTSNS----LNPM 146
Cdd:PRK06459  149 TTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTlmgvYGILKMTILTQTIpigyFGLT 228

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 147 LMATMAIaSAALGGWMGLNQTQLRKVLAFSSIAHLGWM-----ALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKL 221
Cdd:PRK06459  229 ILAIGAF-SILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLS 307

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2742832142 222 STMMTSWTKTPTLNA-------ALMLTLLSLAGLPPLTGFLPKWLIIQEL 264
Cdd:PRK06459  308 SGLQEKQSITYSKKIrnrwielGLTLLASSLSGLLPNIGGVASWLLLESL 357
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 86-262 8.94e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 8.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  86 PTSCLLLTTAI--AMKLGLvpfHFWFPEVLQGSSMTTALLLSTMMKFPPITIL-----FLTSNSLNPMLMATMAIASAAL 158
Cdd:MTH00032  226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFF 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 159 GGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYNPKLTLMTFYLYTTMTTTIFLTLNTTKTTKLST--------MMTSWTK 230
Cdd:MTH00032  303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvdeqdmrkMGGLIHS 382

                         170       180       190
                  ....*....|....*....|....*....|..
gi 2742832142 231 TPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQ 262
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 75-188 9.09e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 41.06  E-value: 9.09e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  75 TGQWDITQL-THPTSCLLLTTAIAM-------KLGLVPFHFWFPEVLQGSSMTTALLLSTMM---------KFPPItilF 137
Cdd:PRK12644  184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2742832142 138 LTSNSLNPMLMaTMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALII 188
Cdd:PRK12644  261 ADVPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 7-290 2.30e-03

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 39.36  E-value: 2.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142   7 LLLGTTITISSNHWAMAWAGLEINTLAAIPLISKSHHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHP 86
Cdd:PRK08377  117 LMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQL 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  87 TSCL----------LLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMK----FPPITILFLTSNSLN----PMLM 148
Cdd:PRK08377  197 AGTIdptvaqvglaLLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVkaglYAMARILYLMQNANGwssvLKLV 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 149 ATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGW--MALIIMYNPKLTLMTFYL--YTTMTTTIFLTLNTTKTTKLSTM 224
Cdd:PRK08377  277 IIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMiaLALALGTQAGVDAGVFHMinHAIVKALLFLAVGYVGITLGGTE 356

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 225 MTSWT----KTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:PRK08377  357 IEKFEglgkRMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRL 426
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 90-266 2.65e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.43  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  90 LLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTM-MKFPPITILFLTSNSLNP-----MLMATMAIASAALGGWMG 163
Cdd:PRK08042  184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYA 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 164 LNQTQLRKVLAFSSIAHLGWMAL--------IIMYNPKLTLMTFY--LYTTMTTTIFLTLNTTKTTKL---------STM 224
Cdd:PRK08042  264 LMEHNIQRLLAYHTLENIGIILLglgagvtgIALEQPALIALGLVggLYHLLNHSLFKSVLFLGAGSVwfrtghrdiEKL 343

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2742832142 225 MTSWTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTK 266
Cdd:PRK08042  344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 285-326 2.96e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 35.31  E-value: 2.96e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2742832142 285 FFYLRLAYYSTITLPPNSTNHTKQWHTR-TATSPQIAILTSMS 326
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNsTKNTLLLPTLTTLS 43
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 89-307 3.03e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 39.29  E-value: 3.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  89 CLLLTTAIAMKLGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNSLNPMLMATMAIA-----SAALGGWMG 163
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 164 LNQTQLRKVLAFSSIAHLGWMAL---IIMYNPKL-TLMT--FY---LYTTMTTTIFLTLNTTKTTKLSTMMTSWTKTPTL 234
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVacgLSHYSISLfHLMNhaFFkalLFLSAGSVIHALSDEQDMRKMGGLISFLPLTYIF 372

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2742832142 235 naaLMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLS-LLGLFFYLRLAYYSTItlppNSTNHTK 307
Cdd:MTH00020  373 ---FLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIYLTFL----SNTNLKK 439
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 232-290 4.62e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.39  E-value: 4.62e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2742832142 232 PTLNAALMLTLLSLAGLPPLTGFLPKWLIIQELTKQEMTAAATIIAMLSLLGLFFYLRL 290
Cdd:PRK07691  370 PVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 42-257 5.36e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.66  E-value: 5.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  42 HHPRAVEASIKYFLVQASASAILLLSSTMNAWLTGQWDITQLTHPTSCL--------------LLTTAIAMKLGLVPFHF 107
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplflitliLIFIGAAAKSAQGPFYI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 108 WFPEVLQGSSMTTALLLSTMMKFPPITIL-----FLTSNSLNPMLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLG 182
Cdd:PRK12649  236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVarihpIFSGTEAWFILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 183 WMALIIMYNPK------LTLMTFYL--YTTMTTTIFLTLNTTKTTKLSTMMTSW----TKTPTLNAALMLTLLSLAGLPP 250
Cdd:PRK12649  316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGIVAHEAATRDIRKLgglrKEMPITFIVASIAALAMAGIPP 395


                  ....*..
gi 2742832142 251 LTGFLPK 257
Cdd:PRK12649  396 LNGFLSK 402
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
 22-142 6.39e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 37.60  E-value: 6.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  22 MAWAGLEINTLAAIPLISKSHHPRAVEA--SIKYFLVQASASAILLLSStmnawltgqwditqLTHPTSCLLLTTAIAMK 99
Cdd:MTH00059   30 GFWVFLELCGLSLIPCFFLSSNSNVLNFysSLLSYIVMSGLSSSLLVSG--------------LLFSDLYFFIFFGFVVK 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2742832142 100 LGLVPFHFWFPEVLQGSSMTTALLLSTMMKFPPITILFLTSNS 142
Cdd:MTH00059   96 FGLFPFMFWVYRVFSNSSWVVIWLISVVMKFPVLFFCFFLQGG 138
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 95-189 6.48e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 6.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  95 AIAMKLGLVPFHFWFPEV-----LQGSSMTTALLLS------TMMKFPpitILFLTSNSLNPMLMAtMAIASAALGGWMG 163
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKlggyglVRLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 2742832142 164 LNQTQLRKVLAFSSIAHLGWMALIIM 189
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
49-262 7.54e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 37.77  E-value: 7.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142  49 ASIKYFLVQASASAILLLSSTMNAWLTGQWD------ITQ-LTHPTSCLLLTTAI---AMKLGLVPFHFWFPEVLQGSSM 118
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 119 TTALLLSTMM-KFPPITI------LFLTSNSLNPMLMATMAIASAALGGWMGLNQTQLRKVLAFSSIAHLGWMALIIMYN 191
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2742832142 192 PKLTLMTFYLYTTMTTTIFLTLNTTK-----------TTKLSTMMTSWTKTPTLNAALMLTLLSLAGLPPLTGFLPKWLI 260
Cdd:PRK07363  318 TQLSLLGAVAQMISHGLILALLFHLVgiverkvgtrdLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIV 397


                  ..
gi 2742832142 261 IQ 262
Cdd:PRK07363  398 FQ 399
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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