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Conserved domains on  [gi|2795069281|gb|XFC50935|]
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cytochrome b, partial (mitochondrion) [Cirrhitichthys oxycephalus]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-217 2.66e-155

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 435.24  E-value: 2.66e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL 307
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-217 2.66e-155

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 435.24  E-value: 2.66e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL 307
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-217 5.17e-67

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 210.80  E-value: 5.17e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYlyKE----TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWG 76
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  77 GFSVDNATLTRFFAF-HFLFPFVIAAATVIHLLFLHETGSNNPLG----LNSDADKISFHPYFSYKDLLGFAALLIGLTC 151
Cdd:COG1290   178 GEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2795069281 152 LALFSPNllGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPFL 217
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFL 323
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-116 3.91e-41

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 138.66  E-value: 3.91e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSY--LYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGF 78
Cdd:cd00284    83 FLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2795069281  79 SVDNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSN 116
Cdd:cd00284   163 SVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-163 7.31e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 129.28  E-value: 7.31e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGF 78
Cdd:pfam13631   4 IAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  79 SVDNATLTRFFAF-HFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSP 157
Cdd:pfam13631  84 FPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINP 163


                  ....*.
gi 2795069281 158 NLLGDP 163
Cdd:pfam13631 164 IWLGGP 169
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 139-217 3.64e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 3.64e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2795069281 139 LLGFAALLIGLtclALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:TIGR01156  44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-217 2.66e-155

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 435.24  E-value: 2.66e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00131   91 FICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00131  171 DNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLL 250

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00131  251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPIL 307
CYTB MTH00119
cytochrome b; Provisional
 1-217 6.27e-142

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 401.20  E-value: 6.27e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00119   92 FICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00119  172 DNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLL 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00119  252 GDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFL 308
CYTB MTH00074
cytochrome b; Provisional
 1-217 6.17e-138

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 390.97  E-value: 6.17e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00074   92 FICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00074  172 DKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLL 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00074  252 GDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPML 308
CYTB MTH00191
cytochrome b; Provisional
 1-217 1.75e-134

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 381.96  E-value: 1.75e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00191   88 FICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSV 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00191  168 DNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLL 247

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00191  248 GDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLL 304
CYTB MTH00156
cytochrome b; Provisional
 1-216 9.49e-134

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 379.51  E-value: 9.49e-134
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPF 216
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPF 296
CYTB MTH00100
cytochrome b; Provisional
 1-217 1.90e-132

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 377.06  E-value: 1.90e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00100   91 FICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSV 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00100  171 DKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLL 250

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00100  251 GDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLL 307
CYTB MTH00145
cytochrome b; Provisional
 1-217 2.93e-124

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 356.52  E-value: 2.93e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00145   92 FICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00145  172 GNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLL 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00145  252 GDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLL 308
CYTB MTH00034
cytochrome b; Validated
 1-217 6.67e-119

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 342.84  E-value: 6.67e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00034   91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSV 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00034  171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00034  251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPIL 307
CYTB MTH00016
cytochrome b; Validated
 1-217 3.28e-117

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 338.58  E-value: 3.28e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00016   92 FICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00016  172 DNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNIL 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00016  252 GDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFI 308
CYTB MTH00022
cytochrome b; Validated
 1-217 7.97e-100

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 294.30  E-value: 7.97e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00022   90 FLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSV 169

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00022  170 SNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLL 249

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00022  250 GDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLL 306
CYTB MTH00224
cytochrome b; Provisional
 1-216 8.69e-100

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 294.14  E-value: 8.69e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPF 216
Cdd:MTH00224  252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPL 307
CYTB MTH00053
cytochrome b; Provisional
 1-217 1.42e-98

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 291.22  E-value: 1.42e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSV 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLL 160
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00053  252 GDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYL 308
CYTB MTH00086
cytochrome b; Provisional
 1-217 4.26e-76

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 232.91  E-value: 4.26e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00086   80 FIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGV 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIgLTCLALFSPNLL 160
Cdd:MTH00086  160 SSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNL 238

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2795069281 161 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00086  239 GDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV 295
CYTB MTH00033
cytochrome b; Provisional
 1-217 2.69e-73

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 226.74  E-value: 2.69e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00033   88 FICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSV 167

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFS--PN 158
Cdd:MTH00033  168 SNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriET 247

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2795069281 159 LLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:MTH00033  248 LLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPIL 306
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-217 5.17e-67

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 210.80  E-value: 5.17e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYlyKE----TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWG 76
Cdd:COG1290   100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  77 GFSVDNATLTRFFAF-HFLFPFVIAAATVIHLLFLHETGSNNPLG----LNSDADKISFHPYFSYKDLLGFAALLIGLTC 151
Cdd:COG1290   178 GEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2795069281 152 LALFSPNllGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLFSILVLMVVPFL 217
Cdd:COG1290   258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFL 323
CYTB MTH00046
cytochrome b; Validated
 1-215 9.47e-62

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 196.36  E-value: 9.47e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSV 80
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSV 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  81 DNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSNNPLGL-NSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNL 159
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDL 241

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2795069281 160 LGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLFSILVLMVVP 215
Cdd:MTH00046  242 VLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP 296
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-116 3.91e-41

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 138.66  E-value: 3.91e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSY--LYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGF 78
Cdd:cd00284    83 FLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGF 162

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2795069281  79 SVDNATLTRFFAFHFLFPFVIAAATVIHLLFLHETGSN 116
Cdd:cd00284   163 SVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 117-217 2.98e-40

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 134.70  E-value: 2.98e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281 117 NPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 196
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100
                  ....*....|....*....|.
gi 2795069281 197 KLGGVLALLFSILVLMVVPFL 217
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFL 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-163 7.31e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 129.28  E-value: 7.31e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGF 78
Cdd:pfam13631   4 IAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLFGGP 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  79 SVDNATLTRFFAF-HFLFPFVIAAATVIHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAALLIGLTCLALFSP 157
Cdd:pfam13631  84 FPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINP 163


                  ....*.
gi 2795069281 158 NLLGDP 163
Cdd:pfam13631 164 IWLGGP 169
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-114 1.59e-37

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 129.04  E-value: 1.59e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   1 FICIYLHIGRGLYYG--SYLYKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGF 78
Cdd:pfam00033  74 FLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSF 153

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2795069281  79 SVDNATLTRFFAFHFLFPFVIAAATVIHLLFLHETG 114
Cdd:pfam00033 154 SVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
168-217 1.44e-25

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 95.24  E-value: 1.44e-25
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2795069281 168 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWL 50
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 139-217 1.86e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 62.89  E-value: 1.86e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2795069281 139 LLGFAALLIGLtclALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:COG5679    45 ILGTIALCIGL---AVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
petD CHL00058
cytochrome b6/f complex subunit IV
 139-217 2.75e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.33  E-value: 2.75e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2795069281 139 LLGFAALLIGLtclALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:CHL00058   44 ILGTIACNVGL---AVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFL 114
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 139-217 3.64e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 3.64e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2795069281 139 LLGFAALLIGLtclALFSPNLLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPFL 217
Cdd:TIGR01156  44 ILGTIACVVGL---AVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFI 114
petB CHL00070
cytochrome b6
 40-119 4.83e-09

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 54.34  E-value: 4.83e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281  40 GYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATVI-HLLFLHETGSNNP 118
Cdd:CHL00070  135 GYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHTFVLPLLTAVFMLmHFLMIRKQGISGP 214


                  .
gi 2795069281 119 L 119
Cdd:CHL00070  215 L 215
PRK03735 PRK03735
cytochrome b6; Provisional
 4-119 1.55e-08

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 52.79  E-value: 1.55e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2795069281   4 IYLHIGRGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAIPYVGNMLVQWIWGGFSVD 81
Cdd:PRK03735  105 MFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVG 184

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2795069281  82 NATLTRFFAFHFLFP-FVIAAATVIHLLFLHETGSNNPL 119
Cdd:PRK03735  185 AQTLTRFFAIHVFFLpWALAVLMLAHFLMIRKQGISGPL 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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