RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III [Komagataella phaffii GS115]
RpoK/RPB6 RNA polymerase subunit family protein( domain architecture ID 10010664)
RpoK/RPB6 RNA polymerase subunit family protein similar to DNA-directed RNA polymerases I, II, and III subunit RPABC2 is a common component of RNA polymerases I, II, and III, which synthesize ribosomal RNA precursors, mRNA precursors and many functional non-coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PLN00152 | PLN00152 | DNA-directed RNA polymerase; Provisional |
70-155 | 3.22e-44 | |||
DNA-directed RNA polymerase; Provisional : Pssm-ID: 177755 Cd Length: 130 Bit Score: 141.93 E-value: 3.22e-44
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Name | Accession | Description | Interval | E-value | |||
PLN00152 | PLN00152 | DNA-directed RNA polymerase; Provisional |
70-155 | 3.22e-44 | |||
DNA-directed RNA polymerase; Provisional Pssm-ID: 177755 Cd Length: 130 Bit Score: 141.93 E-value: 3.22e-44
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RNA_pol_Rpb6 | pfam01192 | RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and ... |
81-131 | 2.75e-11 | |||
RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly. Pssm-ID: 426112 Cd Length: 52 Bit Score: 55.22 E-value: 2.75e-11
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RpoZ | COG1758 | DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, ... |
87-136 | 1.56e-04 | |||
DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, subunit K/omega is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441364 Cd Length: 64 Bit Score: 37.85 E-value: 1.56e-04
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Name | Accession | Description | Interval | E-value | |||
PLN00152 | PLN00152 | DNA-directed RNA polymerase; Provisional |
70-155 | 3.22e-44 | |||
DNA-directed RNA polymerase; Provisional Pssm-ID: 177755 Cd Length: 130 Bit Score: 141.93 E-value: 3.22e-44
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rpoK | PRK01099 | DNA-directed RNA polymerase subunit K; Provisional |
82-140 | 1.55e-27 | |||
DNA-directed RNA polymerase subunit K; Provisional Pssm-ID: 179220 Cd Length: 62 Bit Score: 97.31 E-value: 1.55e-27
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RNA_pol_Rpb6 | pfam01192 | RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and ... |
81-131 | 2.75e-11 | |||
RNA polymerase Rpb6; Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly. Pssm-ID: 426112 Cd Length: 52 Bit Score: 55.22 E-value: 2.75e-11
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RpoZ | COG1758 | DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, ... |
87-136 | 1.56e-04 | |||
DNA-directed RNA polymerase, subunit K/omega [Transcription]; DNA-directed RNA polymerase, subunit K/omega is part of the Pathway/BioSystem: RNA polymerase Pssm-ID: 441364 Cd Length: 64 Bit Score: 37.85 E-value: 1.56e-04
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Blast search parameters | ||||
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