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Conserved domains on  [gi|294894004|ref|XP_002774708|]
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60S ribosomal protein L23a, putative [Perkinsus marinus ATCC 50983]

Protein Classification

uL23 family ribosomal protein( domain architecture ID 11488238)

uL23 family ribosomal protein is a component of the large ribosomal subunit.

Gene Ontology:  GO:0006412|GO:1904841|GO:0003735
PubMed:  8428950|8177742|24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
 1-141 2.60e-65

60S ribosomal protein L23a; Provisional


:

Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 195.69  E-value: 2.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004   1 MAPATDAKSKASKTGAALTKGVQVKTRKVRKNTTFFRPKTRQTPKAPKYPRSATPTLTKMDKYRIIRSPMTSEWAMKHIE 80
Cdd:PTZ00191   1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294894004  81 DLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:PTZ00191  81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
 1-141 2.60e-65

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 195.69  E-value: 2.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004   1 MAPATDAKSKASKTGAALTKGVQVKTRKVRKNTTFFRPKTRQTPKAPKYPRSATPTLTKMDKYRIIRSPMTSEWAMKHIE 80
Cdd:PTZ00191   1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294894004  81 DLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:PTZ00191  81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141
uL23_arch TIGR03636
ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein ...
 69-141 4.64e-24

ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274692  Cd Length: 77  Bit Score: 88.81  E-value: 4.64e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294894004   69 PMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:TIGR03636   1 PLVTEKAMNLIEKENKLTFIVDRRATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYSAEEIASR 73
Ribosomal_L23 pfam00276
Ribosomal protein L23;
65-132 1.97e-15

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 66.69  E-value: 1.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004   65 IIRSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRH-------------DGLKKAYVKLAD 131
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkvkrfgrfvgrrSDWKKAIVTLAE 81


                  .
gi 294894004  132 D 132
Cdd:pfam00276  82 G 82
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 67-132 2.71e-13

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 61.24  E-value: 2.71e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294894004  67 RSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRH-------------DGLKKAYVKLADD 132
Cdd:COG0089    1 KRPVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkkkrfgrrvgkrSDWKKAIVTLAEG 79
 
Name Accession Description Interval E-value
PTZ00191 PTZ00191
60S ribosomal protein L23a; Provisional
 1-141 2.60e-65

60S ribosomal protein L23a; Provisional


Pssm-ID: 185507 [Multi-domain]  Cd Length: 145  Bit Score: 195.69  E-value: 2.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004   1 MAPATDAKSKASKTGAALTKGVQVKTRKVRKNTTFFRPKTRQTPKAPKYPRSATPTLTKMDKYRIIRSPMTSEWAMKHIE 80
Cdd:PTZ00191   1 KAPAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVRFFRPKTLRLPKKPKYPRRVKPASKKLDKYSIIKYPLTTEKAMKKIE 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 294894004  81 DLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:PTZ00191  81 DNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141
PRK14548 PRK14548
50S ribosomal protein L23P; Provisional
 63-141 8.09e-28

50S ribosomal protein L23P; Provisional


Pssm-ID: 237750  Cd Length: 84  Bit Score: 98.39  E-value: 8.09e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294894004  63 YRIIRSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:PRK14548   2 YSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80
uL23_arch TIGR03636
ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein ...
 69-141 4.64e-24

ribosomal protein uL23, archaeal form; This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 274692  Cd Length: 77  Bit Score: 88.81  E-value: 4.64e-24
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 294894004   69 PMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRHDGLKKAYVKLADDFDALDVGNR 141
Cdd:TIGR03636   1 PLVTEKAMNLIEKENKLTFIVDRRATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYSAEEIASR 73
rplW PRK05738
50S ribosomal protein L23; Reviewed
 63-132 9.34e-16

50S ribosomal protein L23; Reviewed


Pssm-ID: 235586  Cd Length: 92  Bit Score: 67.81  E-value: 9.34e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004  63 YRIIRSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLV-------------RHDGLKKAYVKL 129
Cdd:PRK05738   1 YDVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNvkgktkrfgrrigKRSDWKKAIVTL 80


                 ...
gi 294894004 130 ADD 132
Cdd:PRK05738  81 AEG 83
Ribosomal_L23 pfam00276
Ribosomal protein L23;
65-132 1.97e-15

Ribosomal protein L23;


Pssm-ID: 459743  Cd Length: 86  Bit Score: 66.69  E-value: 1.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004   65 IIRSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRH-------------DGLKKAYVKLAD 131
Cdd:pfam00276   2 VIIKPVITEKSTALMEKNNKYTFEVDPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkvkrfgrfvgrrSDWKKAIVTLAE 81


                  .
gi 294894004  132 D 132
Cdd:pfam00276  82 G 82
RplW COG0089
Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 ...
 67-132 2.71e-13

Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L23 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439859  Cd Length: 88  Bit Score: 61.24  E-value: 2.71e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 294894004  67 RSPMTSEWAMKHIEDLNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLVRH-------------DGLKKAYVKLADD 132
Cdd:COG0089    1 KRPVITEKSTALAEKNNKYTFEVAPDANKTEIKKAVEKLFGVKVEKVNTLNVKgkkkrfgrrvgkrSDWKKAIVTLAEG 79
Ribosomal_L23eN pfam03939
Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the ...
 7-55 1.26e-10

Ribosomal protein L23, N-terminal domain; The N-terminal domain appears to be specific to the eukaryotic ribosomal proteins L25, L23, and L23a.


Pssm-ID: 461099 [Multi-domain]  Cd Length: 50  Bit Score: 53.33  E-value: 1.26e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 294894004    7 AKSKASKTGAALTKGVQ-VKTRKVRKNTTFFRPKTRQTPKAPKYPRSATP 55
Cdd:pfam03939   1 AKAKALKAKKAVLKGVHsHKKKKIRTSVTFHRPKTLRLARQPKYPRKSVP 50
rplW PRK12280
50S ribosomal protein L23; Reviewed
 60-134 2.86e-05

50S ribosomal protein L23; Reviewed


Pssm-ID: 237035 [Multi-domain]  Cd Length: 158  Bit Score: 41.67  E-value: 2.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294894004  60 MDKYRIIRSPMTSEWAMKHIEDlNTLVFLCDIQATKQQIRDAVESLYDIKCKKVNTLV---------RHDGL----KKAY 126
Cdd:PRK12280   1 MNINEVIKKPILTEKSYSLMSK-NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNvdkkpkrlgRFPGFtnsyKKAY 79


                 ....*...
gi 294894004 127 VKLADDFD 134
Cdd:PRK12280  80 VTLAEGYS 87
rpl23 CHL00030
ribosomal protein L23
 83-115 3.06e-03

ribosomal protein L23


Pssm-ID: 176971  Cd Length: 93  Bit Score: 34.89  E-value: 3.06e-03
                         10        20        30
                 ....*....|....*....|....*....|...
gi 294894004  83 NTLVFLCDIQATKQQIRDAVESLYDIKCKKVNT 115
Cdd:CHL00030  20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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