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Conserved domains on  [gi|542233469|ref|XP_005454995|]
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protein FAM104A [Oreochromis niloticus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM104 super family cl21257
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 6-111 1.42e-11

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


The actual alignment was detected with superfamily member pfam15434:

Pssm-ID: 464715  Cd Length: 109  Bit Score: 56.40  E-value: 1.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 542233469    6 RKRQHsGGDEENGHLVPQAKRQTRAHPLspepgRDAWD---SESSNSESSSSISSPERAAG--SCVSQCAQGPySPLSVG 80
Cdd:pfam15434   1 RKRRR-NGNEEDNHVLPQPKRSSRNTVL-----QDSWDtesSSSDSGGSSSSINSPDRASGpeSSLNPIMPGS-SPNTPQ 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 542233469   81 NSLEPTNPV--SYLHINRILKEAHFQSLQNRGH 111
Cdd:pfam15434  74 FSQEQSALCqgPYFHINQILKEAHFHSLQHRGR 106
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 6-111 1.42e-11

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 56.40  E-value: 1.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 542233469    6 RKRQHsGGDEENGHLVPQAKRQTRAHPLspepgRDAWD---SESSNSESSSSISSPERAAG--SCVSQCAQGPySPLSVG 80
Cdd:pfam15434   1 RKRRR-NGNEEDNHVLPQPKRSSRNTVL-----QDSWDtesSSSDSGGSSSSINSPDRASGpeSSLNPIMPGS-SPNTPQ 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 542233469   81 NSLEPTNPV--SYLHINRILKEAHFQSLQNRGH 111
Cdd:pfam15434  74 FSQEQSALCqgPYFHINQILKEAHFHSLQHRGR 106
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 6-111 1.42e-11

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 56.40  E-value: 1.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 542233469    6 RKRQHsGGDEENGHLVPQAKRQTRAHPLspepgRDAWD---SESSNSESSSSISSPERAAG--SCVSQCAQGPySPLSVG 80
Cdd:pfam15434   1 RKRRR-NGNEEDNHVLPQPKRSSRNTVL-----QDSWDtesSSSDSGGSSSSINSPDRASGpeSSLNPIMPGS-SPNTPQ 73

                          90       100       110
                  ....*....|....*....|....*....|...
gi 542233469   81 NSLEPTNPV--SYLHINRILKEAHFQSLQNRGH 111
Cdd:pfam15434  74 FSQEQSALCqgPYFHINQILKEAHFHSLQHRGR 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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