NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|602730319|ref|XP_007450573|]
View 

PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 [Lipotes vexillifer]

Protein Classification

NDUF_B4 domain-containing protein( domain architecture ID 10537755)

NDUF_B4 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.84e-81

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


:

Pssm-ID: 429355  Cd Length: 124  Bit Score: 233.83  E-value: 3.84e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 602730319    5 KYKPSRLATLPSTLDPAEYDISPETRKAQAERLAIRSRLKREYLLQYNDPSRHGVIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 602730319   85 KTSLLGALFGIGPLLFWYYVFKTDRDRKEKLIREGKLDRTFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.84e-81

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 233.83  E-value: 3.84e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 602730319    5 KYKPSRLATLPSTLDPAEYDISPETRKAQAERLAIRSRLKREYLLQYNDPSRHGVIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 602730319   85 KTSLLGALFGIGPLLFWYYVFKTDRDRKEKLIREGKLDRTFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.84e-81

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 233.83  E-value: 3.84e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 602730319    5 KYKPSRLATLPSTLDPAEYDISPETRKAQAERLAIRSRLKREYLLQYNDPSRHGVIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 602730319   85 KTSLLGALFGIGPLLFWYYVFKTDRDRKEKLIREGKLDRTFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH