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Conserved domains on  [gi|644995405|ref|XP_008208824|]
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putative protein FAM10A4 isoform X1 [Nasonia vitripennis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
137-221 2.63e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.63e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 644995405 217 ACKFD 221
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
137-325 3.84e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 3.84e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 217 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 295
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 644995405 296 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 325
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 14-54 4.91e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


:

Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 4.91e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 644995405  14 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 54
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
STI1 super family cl17974
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 302-358 3.98e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


The actual alignment was detected with superfamily member pfam17830:

Pssm-ID: 450205  Cd Length: 55  Bit Score: 46.40  E-value: 3.98e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 644995405  302 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 358
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
137-221 2.63e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.63e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 644995405 217 ACKFD 221
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
137-325 3.84e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 3.84e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 217 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 295
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 644995405 296 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 325
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 128-224 8.57e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 71.74  E-value: 8.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 128 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKF 207
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                         90
                 ....*....|....*..
gi 644995405 208 EEATNDLRKACKFDFDE 224
Cdd:PLN03088  87 QTAKAALEKGASLAPGD 103
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 14-54 4.91e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 4.91e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 644995405  14 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 54
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 95-251 2.30e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405   95 TGVIEPDNDPPQPMGDSDLQPTEEQIEESHEK-RSQAVSAFVEKDYEKAIKLYTEAIELNPQAsLLYAKRGQVYLLLNKP 173
Cdd:TIGR00990  98 NAPVEPADELPEIDESSVANLSEEERKKYAAKlKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDW 176

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405  174 NACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD-FDEQADEWLREVTPNARKIEEHKRKRERKQ 251
Cdd:TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDgFRNEQSAQAVERLLKKFAESKAKEILETKP 255
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 21-54 1.36e-09

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 53.05  E-value: 1.36e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 644995405   21 KVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 54
Cdd:pfam18253   9 KQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 302-358 3.98e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 46.40  E-value: 3.98e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 644995405  302 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 358
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
STI1 smart00727
Heat shock chaperonin-binding motif;
310-349 1.57e-06

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 44.18  E-value: 1.57e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 644995405   310 DPEVLQAFQDPEVAEAFKDISANPSNIFKY-QSNPKVMALI 349
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
TPR_11 pfam13414
TPR repeat;
133-170 6.06e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 6.06e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 644995405  133 AFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLL 170
Cdd:pfam13414   3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 128-196 9.23e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 9.23e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405 128 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAhKF 196
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE-KY 72
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 160-189 1.17e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 1.17e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 644995405   160 YAKRGQVYLLLNKPNACIRDCNRALELNPD 189
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
137-221 2.63e-17

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 79.96  E-value: 2.63e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG4785   87 GDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEK 166


                 ....*
gi 644995405 217 ACKFD 221
Cdd:COG4785  167 ALELD 171
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
137-325 3.84e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 80.05  E-value: 3.84e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 217 ACKFDFD-EQADEWLREVTPNARKIEEHKRKRERKQMERQEREKLERLRKIREAQAKAREQQQQQQASSPADGEAPGAGV 295
Cdd:COG0457  136 ALELDPDdADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215

                        170       180       190
                 ....*....|....*....|....*....|
gi 644995405 296 GGPGGMPQFAQFLNDPEVLQAFQDPEVAEA 325
Cdd:COG0457  216 LAALAELLLLALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
137-223 4.52e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.97  E-value: 4.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG0457   22 GRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101


                 ....*..
gi 644995405 217 ACKFDFD 223
Cdd:COG0457  102 ALELDPD 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 129-231 8.60e-15

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 70.61  E-value: 8.60e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 129 QAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFE 208
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100
                 ....*....|....*....|...
gi 644995405 209 EATNDLRKACKFDfDEQADEWLR 231
Cdd:COG4783   90 EALALLEKALKLD-PEHPEAYLR 111
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 128-224 8.57e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 71.74  E-value: 8.57e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 128 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKF 207
Cdd:PLN03088   7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86

                         90
                 ....*....|....*..
gi 644995405 208 EEATNDLRKACKFDFDE 224
Cdd:PLN03088  87 QTAKAALEKGASLAPGD 103
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 130-221 4.28e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.41  E-value: 4.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 209
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90
                 ....*....|..
gi 644995405 210 ATNDLRKACKFD 221
Cdd:COG3914  199 AIAAYRRALELD 210
Hip_N cd14438
N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; ...
 14-54 4.91e-13

N-terminal dimerization domain of the Hsp70-interacting protein (Hip) and similar proteins; The Hsc70/Hsp70-interacting protein (Hip, also p48 or suppressor of tumorigenicity ST13) functions as a regulator of the cyclic action of Hsp70. Hip forms homodimers, and this model characterizes the N-terminal dimerization domain, which may not be directly involved in its regulatory function. A central domain of Hip that contains TPR repeats binds the ATPase domain of Hsp70 and slows the release of ADP.


Pssm-ID: 271228  Cd Length: 41  Bit Score: 62.57  E-value: 4.91e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 644995405  14 SELLTQFKVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 54
Cdd:cd14438    1 PEKLKELKAFVELCKQNPSILHTPELSFFKEYLESLGAKIP 41
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 108-221 5.22e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 70.02  E-value: 5.22e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 108 MGDSDLQPTEEQIEESHEKRSQAVSAFVE-KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALEL 186
Cdd:COG3914   62 LAAGEAAAAAAALLLLAALLELAALLLQAlGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALAL 141

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 644995405 187 NPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD 221
Cdd:COG3914  142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 130-217 6.77e-13

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 65.03  E-value: 6.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 209
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103


                 ....*...
gi 644995405 210 ATNDLRKA 217
Cdd:COG4235  104 AIAAWQKL 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 130-217 1.10e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 1.10e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 209
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124


                 ....*...
gi 644995405 210 ATNDLRKA 217
Cdd:COG4783  125 AIAALEKA 132
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 137-217 1.82e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 64.60  E-value: 1.82e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG5010   68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147


                 .
gi 644995405 217 A 217
Cdd:COG5010  148 A 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 121-255 7.15e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.14  E-value: 7.15e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 121 EESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRA 200
Cdd:COG2956  142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 644995405 201 NQLLGKFEEATNDLRKACKFDFDEQADEWLREVTPNARKIEEhKRKRERKQMERQ 255
Cdd:COG2956  222 YEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEA-ALALLERQLRRH 275
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
137-217 1.43e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 60.18  E-value: 1.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRdCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84


                 .
gi 644995405 217 A 217
Cdd:COG3063   85 A 85
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
119-221 1.63e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 1.63e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 119 QIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIeLNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRG 198
Cdd:COG4785   36 ALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRG 114

                         90       100
                 ....*....|....*....|...
gi 644995405 199 RANQLLGKFEEATNDLRKACKFD 221
Cdd:COG4785  115 LAYLLLGDYDAALEDFDRALELD 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 136-221 4.67e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.82  E-value: 4.67e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 136 EKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLR 215
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202


                 ....*.
gi 644995405 216 KACKFD 221
Cdd:COG2956  203 RALEQD 208
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 95-251 2.30e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 61.92  E-value: 2.30e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405   95 TGVIEPDNDPPQPMGDSDLQPTEEQIEESHEK-RSQAVSAFVEKDYEKAIKLYTEAIELNPQAsLLYAKRGQVYLLLNKP 173
Cdd:TIGR00990  98 NAPVEPADELPEIDESSVANLSEEERKKYAAKlKEKGNKAYRNKDFNKAIKLYSKAIECKPDP-VYYSNRAACHNALGDW 176

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405  174 NACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFD-FDEQADEWLREVTPNARKIEEHKRKRERKQ 251
Cdd:TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDgFRNEQSAQAVERLLKKFAESKAKEILETKP 255
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
150-223 4.29e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 4.29e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644995405 150 IELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFD 223
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPD 74
HipN pfam18253
Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, ...
 21-54 1.36e-09

Hsp70-interacting protein N N-terminal domain; This is the N-terminal domain, known as HipN, found in Hsp70-interacting protein (Hip) present in Rattus norvegicus. Hip cooperates with the chaperone Hsp70 in protein folding and prevention of aggregation and may delay substrate release by slowing ADP dissociation from Hsp70. HipN is responsible for N-terminal homo-dimerization which is necessary so that the Hip dimer can interact with Hsp70 molecules.


Pssm-ID: 408069  Cd Length: 42  Bit Score: 53.05  E-value: 1.36e-09
                          10        20        30
                  ....*....|....*....|....*....|....
gi 644995405   21 KVFIELCNKQPSIINHPDLAFFKNFVERLGGKVP 54
Cdd:pfam18253   9 KQFVDLCKANPSILHLPELAFFKEFLESLGATVP 42
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 118-221 3.38e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 3.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 118 EQIEESHEKRSQAVSA-----FVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAA 192
Cdd:COG2956   66 QKLLERDPDRAEALLElaqdyLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAH 145

                         90       100
                 ....*....|....*....|....*....
gi 644995405 193 AHKFRGRANQLLGKFEEATNDLRKACKFD 221
Cdd:COG2956  146 AYCELAELYLEQGDYDEAIEALEKALKLD 174
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
130-217 9.50e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 9.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAH--------------- 194
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAlwlylaerkldpeka 193

                         90       100
                 ....*....|....*....|....*...
gi 644995405 195 -----KFRGRANQLLGKFEEATNDLRKA 217
Cdd:COG4785  194 lalllEDWATAYLLQGDTEEARELFKLA 221
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 137-217 2.72e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 2.72e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRK 216
Cdd:COG2956   56 GEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135


                 .
gi 644995405 217 A 217
Cdd:COG2956  136 L 136
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 129-233 7.53e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.19  E-value: 7.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 129 QAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFE 208
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                         90       100
                 ....*....|....*....|....*.
gi 644995405 209 EATNDLRKACKFD-FDEQADEWLREV 233
Cdd:COG2956   94 RAEELLEKLLELDpDDAEALRLLAEI 119
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 112-223 2.01e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 52.68  E-value: 2.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  112 DLQPTEEQIEESHEKRsqAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSA 191
Cdd:TIGR00990 322 DLGKLGEKEAIALNLR--GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP 399

                          90       100       110
                  ....*....|....*....|....*....|..
gi 644995405  192 AAHKFRGRANQLLGKFEEATNDLRKACKFDFD 223
Cdd:TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 141-221 2.90e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.85  E-value: 2.90e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 141 KAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKF 220
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80


                 .
gi 644995405 221 D 221
Cdd:COG4235   81 D 81
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 108-231 3.11e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 52.39  E-value: 3.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  108 MGDSDLQPTEEQIEeSHEKRSQAvsAFVEKDYEKAIKLYTEAIELNPQAslLYAKRGQVYLLL--NKPNACIRDCNRALE 185
Cdd:TIGR02917 113 LPGKTLLDDEGAAE-LLALRGLA--YLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALaeNRFDEARALIDEVLT 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 644995405  186 LNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDEQADEWLR 231
Cdd:TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLAL 233
STI1 pfam17830
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ...
 302-358 3.98e-07

STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.


Pssm-ID: 436075  Cd Length: 55  Bit Score: 46.40  E-value: 3.98e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 644995405  302 PQFAQFLNDPEVLQAFQDPEVAEAFKDISANPSNIFKYQSNPKVMAlinsVFSKNMG 358
Cdd:pfam17830   3 ELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMT----KLGVLMG 55
STI1 smart00727
Heat shock chaperonin-binding motif;
310-349 1.57e-06

Heat shock chaperonin-binding motif;


Pssm-ID: 128966  Cd Length: 41  Bit Score: 44.18  E-value: 1.57e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 644995405   310 DPEVLQAFQDPEVAEAFKDISANPSNIFKY-QSNPKVMALI 349
Cdd:smart00727   1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMlQENPQLLQLI 41
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 130-214 2.69e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 2.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEE 209
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245


                  ....*
gi 644995405  210 ATNDL 214
Cdd:TIGR02917 246 AEKHA 250
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 137-240 2.71e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 49.22  E-value: 2.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHkfrgrANQLLGkfeeatndLRK 216
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH-----SNLLFA--------LRQ 226

                         90       100
                 ....*....|....*....|....
gi 644995405 217 ACKFDFDEQADEWLREVTPNARKI 240
Cdd:COG3914  227 ACDWEVYDRFEELLAALARGPSEL 250
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 155-224 3.53e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.95  E-value: 3.53e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 155 QASLLYAkRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDE 224
Cdd:COG4783    3 CAEALYA-LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE 71
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 110-221 1.28e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 1.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 110 DSDLQPTEEQIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPD 189
Cdd:COG5010    7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                         90       100       110
                 ....*....|....*....|....*....|..
gi 644995405 190 SAAAHKFRGRANQLLGKFEEATNDLRKACKFD 221
Cdd:COG5010   87 NPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 131-219 1.50e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.44  E-value: 1.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 131 VSAFVEKDYEKAIKLYTEAIELNPQASLL---YAKRGQVYLLLNKPNACIRDCNRALELNPDS---AAAHKFRGRANQLL 204
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLEL 80

                         90
                 ....*....|....*
gi 644995405 205 GKFEEATNDLRKACK 219
Cdd:COG1729   81 GDYDKARATLEELIK 95
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 113-223 1.66e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.62  E-value: 1.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  113 LQPTEEQIEESHE-KRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSA 191
Cdd:TIGR02917 318 LNQILKYAPNSHQaRRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENA 397

                          90       100       110
                  ....*....|....*....|....*....|..
gi 644995405  192 AAHKFRGRANQLLGKFEEATNDLRKACKFDFD 223
Cdd:TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 117-221 2.37e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.14  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 117 EEQIEESHEKRSQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKF 196
Cdd:COG3914   38 AAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFN 117

                         90       100
                 ....*....|....*....|....*
gi 644995405 197 RGRANQLLGKFEEATNDLRKACKFD 221
Cdd:COG3914  118 LGNLLLALGRLEEALAALRRALALN 142
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
166-223 3.70e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 3.70e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 644995405 166 VYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATnDLRKACKFDFD 223
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPN 57
TPR_11 pfam13414
TPR repeat;
133-170 6.06e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.76  E-value: 6.06e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 644995405  133 AFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLL 170
Cdd:pfam13414   3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 113-194 8.89e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 44.30  E-value: 8.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  113 LQPTEEQIEESHEKRSQAVSAFVEK-DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSA 191
Cdd:TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALgDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELG 431


                  ...
gi 644995405  192 AAH 194
Cdd:TIGR02917 432 RAD 434
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 128-196 9.23e-05

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.77  E-value: 9.23e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405 128 SQAVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAhKF 196
Cdd:cd24142    5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYE-KY 72
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 137-190 1.23e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 1.23e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 644995405 137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDS 190
Cdd:COG4783   86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 130-188 2.00e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.48  E-value: 2.00e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNP 188
Cdd:COG5010   95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TPR_1 pfam00515
Tetratricopeptide repeat;
160-189 2.20e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.20e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 644995405  160 YAKRGQVYLLLNKPNACIRDCNRALELNPD 189
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_19 pfam14559
Tetratricopeptide repeat;
136-199 2.24e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 2.24e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 644995405  136 EKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGR 199
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 130-203 6.09e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 6.09e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 644995405 130 AVSAFVEKDYEKAIKLYTEAIELNPQASLL---YAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQL 203
Cdd:COG1729   37 GEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 138-203 7.31e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 7.31e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644995405 138 DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQL 203
Cdd:COG4235   66 DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
130-189 7.69e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.23  E-value: 7.69e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 130 AVSAFVEKDYEKAIKlYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPD 189
Cdd:COG3063   33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_9 pfam13371
Tetratricopeptide repeat;
133-201 7.94e-04

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 37.58  E-value: 7.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 644995405  133 AFVEKDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRAN 201
Cdd:pfam13371   5 YLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDAEAIRELLR 73
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
137-265 9.34e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 40.25  E-value: 9.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405 137 KDYEKAIKLYTEAIELNPQ--ASLLYaKRGQVYLLLNKPNACIRDCNRALELNPD--SAAAHKFRGRANQLLGKFEEATN 212
Cdd:COG4700  103 GRYDEAIELYEEALTGIFAddPHILL-GLAQALFELGRYAEALETLEKLIAKNPDfkSSDAHLLYARALEALGDLEAAEA 181

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 644995405 213 DLRKACKF--DFDEQAD--EWLREV--TPNARKI-----EEHKR--KRERKqMERQEREKLERLRK 265
Cdd:COG4700  182 ELEALARRysGPEARYRyaKFLARQgrTAEAKELleeilDEAKHmpKHYRR-LNREWIREAKKLLK 246
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 160-189 1.17e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 35.89  E-value: 1.17e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 644995405   160 YAKRGQVYLLLNKPNACIRDCNRALELNPD 189
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 137-219 1.24e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 1.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  137 KDYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAaahkfrgRANQLLGKFEEATNDLRK 216
Cdd:TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT-------EAQIGLAQLLLAAKRTES 687


                  ...
gi 644995405  217 ACK 219
Cdd:TIGR02917 688 AKK 690
TPR_9 pfam13371
Tetratricopeptide repeat;
165-214 2.06e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.43  E-value: 2.06e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 644995405  165 QVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDL 214
Cdd:pfam13371   3 AIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDL 52
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
184-224 2.35e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.22  E-value: 2.35e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 644995405 184 LELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACKFDFDE 224
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD 41
TPR_1 pfam00515
Tetratricopeptide repeat;
130-155 2.92e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 2.92e-03
                          10        20
                  ....*....|....*....|....*.
gi 644995405  130 AVSAFVEKDYEKAIKLYTEAIELNPQ 155
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 140-262 3.65e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 3.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  140 EKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKACK 219
Cdd:TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 644995405  220 FDFDeqadewlrEVTPNARKIEEHKRKRERKQMERQEREKLER 262
Cdd:TIGR02917 630 LQPD--------SALALLLLADAYAVMKNYAKAITSLKRALEL 664
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 129-155 4.00e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.42  E-value: 4.00e-03
                          10        20
                  ....*....|....*....|....*..
gi 644995405  129 QAVSAFVEKDYEKAIKLYTEAIELNPQ 155
Cdd:pfam07719   7 LGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 128-155 5.39e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 5.39e-03
                           10        20
                   ....*....|....*....|....*...
gi 644995405   128 SQAVSAFVEKDYEKAIKLYTEAIELNPQ 155
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPN 33
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 138-227 6.48e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 38.43  E-value: 6.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 644995405  138 DYEKAIKLYTEAIELNPQASLLYAKRGQVYLLLNKPNACIRDCNRALELNPDSAAAHKFRGRANQLLGKFEEATNDLRKa 217
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR- 458

                          90
                  ....*....|
gi 644995405  218 CKFDFDEQAD 227
Cdd:TIGR00990 459 CKKNFPEAPD 468
TPR_17 pfam13431
Tetratricopeptide repeat;
145-178 9.55e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 33.67  E-value: 9.55e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 644995405  145 LYTEAIELNPQASLLYAKRGQVYLLLNKPNACIR 178
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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