NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|699242850|ref|XP_009858706|]
View 

spermatogenesis-associated protein 48-like isoform X1 [Ciona intestinalis]

Protein Classification

spermatogenesis associated 48( domain architecture ID 10633395)

spermatogenesis associated 48 (SPATA48) is a DUF4540 domain-containing protein, which in mice has been shown to be essential for spermatogenesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 232-359 2.08e-71

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


:

Pssm-ID: 434439  Cd Length: 128  Bit Score: 218.49  E-value: 2.08e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699242850  232 NRPYSYTSHYRKSGHIPCYGGCVGAYNFEDKDHPHEEYRPLTSLRTPKPRYTDTAHRPNIPHYKGCVHWTATHSANNTFP 311
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 699242850  312 APQPPSTAHSHRKLPTSPNTSIHSKKGPLSRMVTTVPPKNPFNQVEDQ 359
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 232-359 2.08e-71

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 218.49  E-value: 2.08e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699242850  232 NRPYSYTSHYRKSGHIPCYGGCVGAYNFEDKDHPHEEYRPLTSLRTPKPRYTDTAHRPNIPHYKGCVHWTATHSANNTFP 311
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 699242850  312 APQPPSTAHSHRKLPTSPNTSIHSKKGPLSRMVTTVPPKNPFNQVEDQ 359
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Name Accession Description Interval E-value
SPATA48 pfam15073
Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as ...
 232-359 2.08e-71

Spermatogenesis-associated protein 48; Spermatogenesis-associated protein 48 is also known as post-meiotic spermatogenesis protein 1. Proteins in this family are typically between 109 and 302 amino acids in length. In humans, it is found in the chromosomal position, C7orf72.


Pssm-ID: 434439  Cd Length: 128  Bit Score: 218.49  E-value: 2.08e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 699242850  232 NRPYSYTSHYRKSGHIPCYGGCVGAYNFEDKDHPHEEYRPLTSLRTPKPRYTDTAHRPNIPHYKGCVHWTATHSANNTFP 311
Cdd:pfam15073   1 AKPINFVSPSSRSKYIPLYTGCVGATNADDVDNPKGDFYPLTKPRTSKPRYTNTSRRPNIPGYTGKVHFTATHPANSTIP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 699242850  312 APQPPSTAHSHRKLPTSPNTSIHSKKGPLSRMVTTVPPKNPFNQVEDQ 359
Cdd:pfam15073  81 STTPSTTSEVHRTLPTSMNVSNHRHQGPLSKMVTTVPPYNPFNQKEKE 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH