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Conserved domains on  [gi|767946817|ref|XP_011514097|]
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serine-rich single-pass membrane protein 1 isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF4636 super family cl21285
Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins ...
1-182 1.06e-104

Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins in this family are typically between 196 and 244 amino acids in length.


The actual alignment was detected with superfamily member pfam15468:

Pssm-ID: 373871  Cd Length: 243  Bit Score: 300.27  E-value: 1.06e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817    1 MSEDKKDEGSGTSTSVRKASKETSCKRQSKDSAWDPSQTMKKPKQNQLTPVTNSEVALVNAYPEQRRARRQSQFNEVNQN 80
Cdd:pfam15468  62 MSENKKDEDSGTSASVSKASKDTSYKRQSKDGCWDSSQTMKKPKQNQLTPVTDSEVALVNAYLEQRRARRHSQFNQVNQI 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817   81 QHDSDTTEYGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKALRTNEWLAHHSRQKPSVT 160
Cdd:pfam15468 142 QHDSDTTECDSEESNSGASSWKESESEHHPSPASIKRRKIAQRQRNLGSYQIRERPCLHCKAMRTNEWLTRHFLQNASAT 221
                         170       180
                  ....*....|....*....|..
gi 767946817  161 PPMKRDSQEESSISDINKKFSK 182
Cdd:pfam15468 222 TPMKGDIQEENSTPEINTKFSK 243
 
Name Accession Description Interval E-value
DUF4636 pfam15468
Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins ...
1-182 1.06e-104

Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins in this family are typically between 196 and 244 amino acids in length.


Pssm-ID: 373871  Cd Length: 243  Bit Score: 300.27  E-value: 1.06e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817    1 MSEDKKDEGSGTSTSVRKASKETSCKRQSKDSAWDPSQTMKKPKQNQLTPVTNSEVALVNAYPEQRRARRQSQFNEVNQN 80
Cdd:pfam15468  62 MSENKKDEDSGTSASVSKASKDTSYKRQSKDGCWDSSQTMKKPKQNQLTPVTDSEVALVNAYLEQRRARRHSQFNQVNQI 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817   81 QHDSDTTEYGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKALRTNEWLAHHSRQKPSVT 160
Cdd:pfam15468 142 QHDSDTTECDSEESNSGASSWKESESEHHPSPASIKRRKIAQRQRNLGSYQIRERPCLHCKAMRTNEWLTRHFLQNASAT 221
                         170       180
                  ....*....|....*....|..
gi 767946817  161 PPMKRDSQEESSISDINKKFSK 182
Cdd:pfam15468 222 TPMKGDIQEENSTPEINTKFSK 243
 
Name Accession Description Interval E-value
DUF4636 pfam15468
Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins ...
1-182 1.06e-104

Domain of unknown function (DUF4636); This family of proteins is found in eukaryotes. Proteins in this family are typically between 196 and 244 amino acids in length.


Pssm-ID: 373871  Cd Length: 243  Bit Score: 300.27  E-value: 1.06e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817    1 MSEDKKDEGSGTSTSVRKASKETSCKRQSKDSAWDPSQTMKKPKQNQLTPVTNSEVALVNAYPEQRRARRQSQFNEVNQN 80
Cdd:pfam15468  62 MSENKKDEDSGTSASVSKASKDTSYKRQSKDGCWDSSQTMKKPKQNQLTPVTDSEVALVNAYLEQRRARRHSQFNQVNQI 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767946817   81 QHDSDTTEYGSEESNSEASSWKESESEHHPSPDSIKRRKMAQRQRNLGSYQMSERHCLHCKALRTNEWLAHHSRQKPSVT 160
Cdd:pfam15468 142 QHDSDTTECDSEESNSGASSWKESESEHHPSPASIKRRKIAQRQRNLGSYQIRERPCLHCKAMRTNEWLTRHFLQNASAT 221
                         170       180
                  ....*....|....*....|..
gi 767946817  161 PPMKRDSQEESSISDINKKFSK 182
Cdd:pfam15468 222 TPMKGDIQEENSTPEINTKFSK 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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