|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-596 |
7.96e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 7.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 40 QLNHYRNVAQNARSELAATLVKFECAQSELQdlrskmlskevscqELKAEMESYKENNARKSSLLTSLRDRVQELEEESA 119
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 120 ALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDpDERNDKASDEDL 199
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE-ALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 200 ILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALERE 279
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 280 VKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEK-- 357
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAye 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 358 ----IREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLEtLQGQLTHLEAELVSGGVLRDNLNF 433
Cdd:COG1196 538 aaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL-ARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 434 EKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLL 513
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 514 RQKIAQLEEEKQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKIKTLEQTKAIEDLNKSR 593
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
...
gi 767943619 594 DQL 596
Cdd:COG1196 777 EAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-657 |
7.73e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 7.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 38 REQLNHYRNVAQNARSELAATLVKfecAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEE 117
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 118 SAALSTSKIRTEitahaaiKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDe 197
Cdd:TIGR02168 318 LEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLETLRS- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 198 dlilKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALE 277
Cdd:TIGR02168 387 ----KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 278 REVKIFQERLLAGQQVWDASKQEvsllkkssselEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTeDTILEK 357
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERE-----------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL-GVLSEL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 358 IrEMDSREESrdrmvsQLEAQISELVEQLGKESgfhqkaLQRAQKA-ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQ 436
Cdd:TIGR02168 529 I-SVDEGYEA------AIEAALGGRLQAVVVEN------LNAAKKAiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 437 KYLKFLDQLSQKMKLD------------------------QMAAELGFDMR---LDVVLARTEQLV----RLESNAVIEN 485
Cdd:TIGR02168 596 NIEGFLGVAKDLVKFDpklrkalsyllggvlvvddldnalELAKKLRPGYRivtLDGDLVRPGGVItggsAKTNSSILER 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 486 KTIAHNLQRKLKTQKERLESKELHMSLLRQKIAQLEEE-KQARTALVVERDNAHLT---IRNLQKKVERLQKELNTCRDL 561
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISALrkdLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 562 HTELKAKLADTNELKIKTLEQTKA----IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMievvTS 637
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL----ER 831
|
650 660
....*....|....*....|
gi 767943619 638 EMKTLKKSLEEAEKREKQLA 657
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELS 851
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
51-666 |
8.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 8.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 51 ARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELE-------EESAALST 123
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEqqkqilrERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 124 SKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDedlilKL 203
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLETLRS-----KV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 204 RDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALEREVKIF 283
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 284 QERLLAGQQVWDASKQEvsllkkssselEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTeDTILEKIrEMDS 363
Cdd:TIGR02168 467 REELEEAEQALDAAERE-----------LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGIL-GVLSELI-SVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 364 REEsrdrmvSQLEAQISELVEQLGKESgfhqkaLQRAQKA-ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYLKFL 442
Cdd:TIGR02168 534 GYE------AAIEAALGGRLQAVVVEN------LNAAKKAiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 443 DQLSQKMKLD------------------------QMAAELGFDMR---LDVVLARTEQLV----RLESNAVIENKTIAHN 491
Cdd:TIGR02168 602 GVAKDLVKFDpklrkalsyllggvlvvddldnalELAKKLRPGYRivtLDGDLVRPGGVItggsAKTNSSILERRREIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 492 LQRKLKTQKERLESKELHMSLLRQKIAQLEEE-KQARTALVVERDNAHLT---IRNLQKKVERLQKELNTCRDLHTELKA 567
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISALrkdLARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 568 KLADTNELKIKTLEQTKA----IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLK 643
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660
....*....|....*....|...
gi 767943619 644 KSLEEAEKREKQLADFREVVSQM 666
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEEL 864
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
25-666 |
4.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 4.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 25 QETYDHLSEVPVTREQLNHYRNVAQNARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLL 104
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 105 TSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEE-NKKQVSKNCRKHEEFLTQLRD 183
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELEELEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 184 CLDpderNDKASDEDLILKLRDLRKENEFVKGQIVILEETINVHEMEaKASRETIMRLASEVNREQKKAASCTEEKEKLN 263
Cdd:TIGR02168 448 ELE----ELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR-LDSLERLQENLEGFSEGVKALLKNQSGLSGIL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 264 QDLLSAVEAKEALEREVkifqERLLAG--QQVW----DASKQEVSLLKKSSS-----------------ELEKSLKASQD 320
Cdd:TIGR02168 523 GVLSELISVDEGYEAAI----EAALGGrlQAVVvenlNAAKKAIAFLKQNELgrvtflpldsikgteiqGNDREILKNIE 598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 321 AVTTSQSQYFSFREKIAALLRGRLSMTGSTED--TILEKIREMDSREesrdRMVSQLEAQISELVEQLGKESGFHQKALQ 398
Cdd:TIGR02168 599 GFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDldNALELAKKLRPGY----RIVTLDGDLVRPGGVITGGSAKTNSSILE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 399 RAQ---KAENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYLKFLDQLSQKMKLDQMAAElgfdmRLDVVLARTEQLV 475
Cdd:TIGR02168 675 RRReieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA-----RLEAEVEQLEERI 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 476 RLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLLRQKIAQLEEE-KQARTALVVERDNAHLTIRNLQKKVERLQKE 554
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElKALREALDELRAELTLLNEEAANLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 555 LNTCRDLHTELKaklaDTNELKIKTLEQtkaIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEV 634
Cdd:TIGR02168 830 ERRIAATERRLE----DLEEQIEELSED---IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670
....*....|....*....|....*....|..
gi 767943619 635 VTSEMKTLKKSLEEAEKREKQLADFREVVSQM 666
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-658 |
3.71e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 103 LLTSLRDRVQELEEESA----ALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFL 178
Cdd:COG1196 194 ILGELERQLEPLERQAEkaerYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 179 TQLrdcldpderndkasdEDLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEE 258
Cdd:COG1196 274 LEL---------------EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 259 KEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQyfsfREKIAA 338
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA----EEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 339 LLRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISELVEQLGKesgfHQKALQRAQKAENMLETLQGQLTHLE 418
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL----LAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 419 AELVSGGVLRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLVRLESNAVIEN--KTIAHNLQRKL 496
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAK 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 497 KTQKERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQkkvERLQKELNTCRDLHTELKAKLADTNELK 576
Cdd:COG1196 571 AGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG---DTLLGRTLVAARLEAALRRAVTLAGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 577 IKTLEQTKA------IEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAE 650
Cdd:COG1196 648 EVTLEGEGGsaggslTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
....*...
gi 767943619 651 KREKQLAD 658
Cdd:COG1196 728 EQLEAERE 735
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
60-588 |
1.17e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 60 VKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEEsaalstskiRTEItahaaiken 139
Cdd:PRK02224 192 LKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER---------REEL--------- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 140 QELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDkASDEDLILKLRDLRKENEFVKGQIVI 219
Cdd:PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDD-ADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 220 LEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERL-LAGQQVWDAS- 297
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFgDAPVDLGNAEd 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 298 -----KQEVSLLKKSSSELEKSLKASQDAVttsqsqyfsfREKIAALLRGRLSMTGS--TEDTILEKIREMDSREESRDR 370
Cdd:PRK02224 413 fleelREERDELREREAELEATLRTARERV----------EEAEALLEAGKCPECGQpvEGSPHVETIEEDRERVEELEA 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 371 MVSQLEAQISELVEQLGKESGFhQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKY-----LKFLDQL 445
Cdd:PRK02224 483 ELEDLEEEVEEVEERLERAEDL-VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeEKREAAA 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 446 SQKMKLDQMAAELG-FDMRLDVVLARTEQLVRLESN-AVIENKTIA-HNLQRKLKTQKERLESKELHMSLLRQKIAQLEE 522
Cdd:PRK02224 562 EAEEEAEEAREEVAeLNSKLAELKERIESLERIRTLlAAIADAEDEiERLREKREALAELNDERRERLAEKRERKRELEA 641
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767943619 523 EKQ--ARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKiktlEQTKAIED 588
Cdd:PRK02224 642 EFDeaRIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR----ERREALEN 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
61-667 |
1.94e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 61 KFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKS-------SLLTSLRDRVQELEEESAALSTSKIRTEITAH 133
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaqleeleSKLDELAEELAELEEKLEELKEELESLEAELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 134 AAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCldpDERNDKASDEDLILKLRDLRKENEFV 213
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERL---EDRRERLQQEIEELLKKLEEAELKEL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 214 KGQIVILEETInvhEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQdLLSAVEAKEALEREVKIFQE---RLLAG 290
Cdd:TIGR02168 439 QAELEELEEEL---EELQEELERLEEALEELREELEEAEQALDAAERELAQ-LQARLDSLERLQENLEGFSEgvkALLKN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 291 QQVWDASKQEVSLLKKSSSELEKSLKA-----SQDAVTTSQSQY---FSFREKIAALLRGRLSMTGSTEDTILEKIREMD 362
Cdd:TIGR02168 515 QSGLSGILGVLSELISVDEGYEAAIEAalggrLQAVVVENLNAAkkaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREIL 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 363 SREESRDRMVSQLEAQISELVEQLGK--------ESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFE 434
Cdd:TIGR02168 595 KNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILE 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 435 KQKYLKfldQLSQKMkldqmaaelgfdmrldvvlARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLLR 514
Cdd:TIGR02168 675 RRREIE---ELEEKI-------------------EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 515 QKIAQLEEEKQARTAlvvERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKL----ADTNELKIKTLEQTKAIEDLN 590
Cdd:TIGR02168 733 KDLARLEAEVEQLEE---RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIeeleAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 591 KSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNM---IEVVTSEMKTLKKSLEEAEKREKQLADFREVVSQML 667
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELsedIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
38-591 |
3.19e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 3.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 38 REQLNHYRNVAQNARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEE 117
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 118 SAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDE 197
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 198 DLILKLRDLRKENEfvkgqiviLEETINVHEMEAKASRETIMRLASEVNREQKKaasctEEKEKLNQDLLSAVEAKEALE 277
Cdd:COG1196 440 EEEALEEAAEEEAE--------LEEEEEALLELLAELLEEAALLEAALAELLEE-----LAEAAARLLLLLEAEADYEGF 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 278 REVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQyfSFREKIAALLRGRLS-MTGSTEDTIle 356
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE--VAAAAIEYLKAAKAGrATFLPLDKI-- 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 357 KIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQ 436
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSL 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 437 KYLKFLDQLSQKMKLDQMAAELgfdmrLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESKELHMSLLRQK 516
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEEL-----AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 517 IAQLEEEKQARTALVVERDNAHLTIRNLQKKVERLQK--------------ELNTCRDLHTELKAKLADTNElKIKTLEQ 582
Cdd:COG1196 738 LEELLEEEELLEEEALEELPEPPDLEELERELERLEReiealgpvnllaieEYEELEERYDFLSEQREDLEE-ARETLEE 816
|
....*....
gi 767943619 583 tkAIEDLNK 591
Cdd:COG1196 817 --AIEEIDR 823
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-448 |
4.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 199 LILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQkkaasctEEKEKLNQDLLSAVEAKEALER 278
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE-------EEIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 279 EVKIFQER--------------LLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAAL----- 339
Cdd:TIGR02168 303 QKQILRERlanlerqleeleaqLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELeeqle 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 340 -LRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISELVEQLgKESGFHQKALQRAQKAEnMLETLQGQLTHLE 418
Cdd:TIGR02168 383 tLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL-EEAELKELQAELEELEE-ELEELQEELERLE 460
|
250 260 270
....*....|....*....|....*....|
gi 767943619 419 AELVSggvLRDNLNFEKQKYLKFLDQLSQK 448
Cdd:TIGR02168 461 EALEE---LREELEEAEQALDAAERELAQL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
48-382 |
5.97e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 48 AQNARSELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALSTSKIR 127
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 128 TEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVSkncrkheefltqlrdcldpderndkasdeDLILKLRDLR 207
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT-----------------------------LLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 208 KENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNreqkkaaSCTEEKEKLNQDLLSAVEAKEALEREVKIFQERL 287
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE-------ELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 288 LAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRgrlsmtgSTEDTILEKIREMDSREES 367
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS-------LTLEEAEALENKIEDDEEE 969
|
330
....*....|....*
gi 767943619 368 RDRMVSQLEAQISEL 382
Cdd:TIGR02168 970 ARRRLKRLENKIKEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
136-666 |
2.68e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 136 IKENQELKKKVVELNEKLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDEdLILKLRDLRKENEFVKG 215
Cdd:PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 216 QIVILEETINVHEMEAKASRETIMRLASEVnREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWD 295
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEELEEKV-KELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 296 ASKQEVSLLKKSSSELEKsLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREESRDRMVSQL 375
Cdd:PRK03918 332 ELEEKEERLEELKKKLKE-LEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 376 EAQISELveqlGKESGFHQKALQRAQKA----------------ENMLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYL 439
Cdd:PRK03918 411 TARIGEL----KKEIKELKKAIEELKKAkgkcpvcgrelteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 440 KFLDQLSQKMKLDQMAAEL-GFDMRLDVVLAR------------TEQLVRLESNAVIENKTI--AHNLQRKLKTQKERLE 504
Cdd:PRK03918 487 KVLKKESELIKLKELAEQLkELEEKLKKYNLEelekkaeeyeklKEKLIKLKGEIKSLKKELekLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 505 SKELHMSLLRQKIAQL----EEEKQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRdlhTELKAKLADTNELKIKTL 580
Cdd:PRK03918 567 ELEEELAELLKELEELgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE---EELDKAFEELAETEKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 581 EQTKAIEDLNKSRDQleKMKEKAEKKLMSVKSELDTTEHEAKENKERarnmIEVVTSEMKTLKKSLEEAEKREKQLADFR 660
Cdd:PRK03918 644 ELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKR----REEIKKTLEKLKEELEEREKAKKELEKLE 717
|
....*.
gi 767943619 661 EVVSQM 666
Cdd:PRK03918 718 KALERV 723
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
352-583 |
1.18e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 352 DTILEKIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGG----VL 427
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 428 RDNLNFEKQKYLKFLDQLSQ-KMKLDQMAAELGfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLESK 506
Cdd:TIGR02168 781 EAEIEELEAQIEQLKEELKAlREALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 507 ELHMSLLRQKIAQLEEE-----------KQARTALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTnEL 575
Cdd:TIGR02168 858 AAEIEELEELIEELESEleallneraslEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL-EV 936
|
....*...
gi 767943619 576 KIKTLEQT 583
Cdd:TIGR02168 937 RIDNLQER 944
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
45-656 |
1.77e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 45 RNVAQNARSEL-AATLVK---FECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKssllTSLRDRVQELEEESAA 120
Cdd:pfam15921 144 RNQLQNTVHELeAAKCLKedmLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK----IYEHDSMSTMHFRSLG 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 121 LSTSKIRTEITAhaaikENQELKKKVVELNEKLQKCSKENEEnkkqvskncrKHEEFLTQLRDCLDPDERNDKASDEDLI 200
Cdd:pfam15921 220 SAISKILRELDT-----EISYLKGRIFPVEDQLEALKSESQN----------KIELLLQQHQDRIEQLISEHEVEITGLT 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 201 LKLRDLRKENEFVKGQIVILEEtinvhemEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLsaveakEALEREV 280
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQE-------QARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI------EELEKQL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 281 KIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKiaallrgrlsMTGSTeDTILEKIRE 360
Cdd:pfam15921 352 VLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR----------DTGNS-ITIDHLRRE 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 361 MDSREESRDRMVSQLEAQISELVEQLGKESGFHQ---KALQRAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNfekqk 437
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSE----- 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 438 ylKFLDQLSQKMKLDQMAAElgfdmrldvvlARTEQLVRLESNAVIENKTIAH---------NLQRKLKTQKERLESKEL 508
Cdd:pfam15921 496 --RTVSDLTASLQEKERAIE-----------ATNAEITKLRSRVDLKLQELQHlknegdhlrNVQTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 509 HMSLLRQKIAQLEE--EKQARTALVVERDNAHLTIRNLQKKVErlQKELNTCRDLHT----ELKAKLADTNELKIKTL-- 580
Cdd:pfam15921 563 VIEILRQQIENMTQlvGQHGRTAGAMQVEKAQLEKEINDRRLE--LQEFKILKDKKDakirELEARVSDLELEKVKLVna 640
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767943619 581 --EQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQL 656
Cdd:pfam15921 641 gsERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM 718
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-421 |
2.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 104 LTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELneklqkcSKENEENKKQVSKNCRKHEEFLTQLRD 183
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI-------EKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 184 CldpderndKASDEDLILKLRDLRKENEFVKGQIVILEETINvhEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLN 263
Cdd:TIGR02169 749 L--------EQEIENVKSELKELEARIEELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 264 QDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAAlLRGR 343
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE-LEAQ 897
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767943619 344 LSMTGSTEDTILEKIremdsrEESRDRMvSQLEAQISELVEQLgKESGFHQKALQRAQKAENMLETLQGQLTHLEAEL 421
Cdd:TIGR02169 898 LRELERKIEELEAQI------EKKRKRL-SELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEI 967
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
210-658 |
5.12e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 5.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 210 NEFVKGQIviLEETiNVHEM--EAKASRETIMRLASEVNREQKKAASCTEEKEkLNQDLLSAVEAKEALERevkifqerL 287
Cdd:COG4913 210 DDFVREYM--LEEP-DTFEAadALVEHFDDLERAHEALEDAREQIELLEPIRE-LAERYAAARERLAELEY--------L 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 288 LAGQQVWDASkQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSREES 367
Cdd:COG4913 278 RAALRLWFAQ-RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 368 RDRMVSQLEAQI------------------SELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAELVSGGVLRD 429
Cdd:COG4913 357 RERRRARLEALLaalglplpasaeefaalrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKS 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 430 NLNfekQKYLKFLDQLSQKMKLD--------------------QMAAE-----LGFDM-----RLDVVLARTEQL---VR 476
Cdd:COG4913 437 NIP---ARLLALRDALAEALGLDeaelpfvgelievrpeeerwRGAIErvlggFALTLlvppeHYAAALRWVNRLhlrGR 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 477 LESNAVIENKTIAHNLQRKLKTQKERLESKE------LHMSLLRQK-------IAQLEEEKQART--------------- 528
Cdd:COG4913 514 LVYERVRTGLPDPERPRLDPDSLAGKLDFKPhpfrawLEAELGRRFdyvcvdsPEELRRHPRAITragqvkgngtrhekd 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 529 --------------------ALVVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELkAKLADTNELKIKTLEQTKAIED 588
Cdd:COG4913 594 drrrirsryvlgfdnraklaALEAELAELEEELAEAEERLEALEAELDALQERREAL-QRLAEYSWDEIDVASAEREIAE 672
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 589 LNKSRDQLekmkEKAEKKLMSVKSELDttehEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLAD 658
Cdd:COG4913 673 LEAELERL----DASSDDLAALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD 734
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
93-596 |
1.17e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 93 YKENNARKSSLLTSLRD-RVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEENKKQVsKNC 171
Cdd:COG4717 29 YGPNEAGKSTLLAFIRAmLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL-EEL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 172 RKHEEFLTQLRDCLDpderndkasdedLILKLRDLRKENEFVKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKK 251
Cdd:COG4717 108 EAELEELREELEKLE------------KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAEL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 252 AASCTEEKEKLNQDLLSAVEAkeaLEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFS 331
Cdd:COG4717 176 QEELEELLEQLSLATEEELQD---LAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 332 FREKIAALLRGRLSMTGSTEDTILEkiremdsreesrdrMVSQLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQ 411
Cdd:COG4717 253 LIAAALLALLGLGGSLLSLILTIAG--------------VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 412 GQLTHLEAElvsggvLRDNLNFEKQKYLKFLDQLSQKMKLDQMAAELGFDMRLDVVLARTEQLvrLESNAVIENKTIAHN 491
Cdd:COG4717 319 EELEELLAA------LGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAL--LAEAGVEDEEELRAA 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 492 LQrklktQKERLESKELHMSLLRQKIAQLEEEkqartalvVERDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLAD 571
Cdd:COG4717 391 LE-----QAEEYQELKEELEELEEQLEELLGE--------LEELLEALDEEELEEELEELEEELEELEEELEELREELAE 457
|
490 500
....*....|....*....|....*
gi 767943619 572 TnELKIKTLEQTKAIEDLNKSRDQL 596
Cdd:COG4717 458 L-EAELEQLEEDGELAELLQELEEL 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
53-656 |
2.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 53 SELAATLVKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAALstskiRTEITA 132
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL-----RAELEE 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 133 HAaiKENQELKKKVVELNEKLQKCSkeneenkkqvskncRKHEEFLTQLRDCLDPDERndkasdedLILKLRDLRKENEF 212
Cdd:TIGR02169 376 VD--KEFAETRDELKDYREKLEKLK--------------REINELKRELDRLQEELQR--------LSEELADLNAAIAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 213 VKGQIVILEETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERllagqq 292
Cdd:TIGR02169 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER------ 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 293 vwdaskqevsllKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLR----GRL-SMTGSTEDTILEKIREMDSREES 367
Cdd:TIGR02169 506 ------------VRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEvaagNRLnNVVVEDDAVAKEAIELLKRRKAG 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 368 RDRMVSQLEAQISELVEQLGKESGFHQKAL------QRAQKA-----------ENMLET--LQGQ--LTHLEAELVS-GG 425
Cdd:TIGR02169 574 RATFLPLNKMRDERRDLSILSEDGVIGFAVdlvefdPKYEPAfkyvfgdtlvvEDIEAArrLMGKyrMVTLEGELFEkSG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 426 VLRDNLNFEKQKYlkfLDQLSQKMKLDQMAAELGfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQRKLKTQKERLES 505
Cdd:TIGR02169 654 AMTGGSRAPRGGI---LFSRSEPAELQRLRERLE---GLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 506 KELHMSLLRQKIAQLEEE----KQARTALVVERDNAHLTIRNLQKKVERLQKELNTC--RDLHTELKAKLADTNELKIKT 579
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDlsslEQEIENVKSELKELEARIEELEEDLHKLEEALNDLeaRLSHSRIPEIQAELSKLEEEV 807
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767943619 580 LEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDTTEHEAKENKERarnmIEVVTSEMKTLKKSLEEAEKREKQL 656
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE----IENLNGKKEELEEELEELEAALRDL 880
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
266-574 |
7.04e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 7.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 266 LLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALlrgrls 345
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL------ 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 346 mtgstEDTILEKIREMD---SREESRDRMVSQLEAQISELVEQLGKEsgFHQKALQRAQKAENMLETLQGQLTHLEAELV 422
Cdd:TIGR02169 750 -----EQEIENVKSELKeleARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 423 SggvlrdnLNFEKQkylkFLDQLSQKMKldqmaaelgfdmrldvvlartEQLVRLESNAVIENKTIaHNLQRKLKTQKER 502
Cdd:TIGR02169 823 R-------LTLEKE----YLEKEIQELQ---------------------EQRIDLKEQIKSIEKEI-ENLNGKKEELEEE 869
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767943619 503 LESKELHMSLLRQKIAQLEEEkqartalvveRDNAHLTIRNLQKKVERLQKELNTCRDLHTELKAKLADTNE 574
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKE----------RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
61-596 |
1.03e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 61 KFECAQSELQDLRSKMLSKEVSCQELKAEMESYKEnnarKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQ 140
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 141 ELKKKVVELNE---------KLQKCSKENEENKKQVSKNCRKHEEFLTQLRDCLDpdERNDKASdedlilKLRDLRKENE 211
Cdd:PRK03918 277 ELEEKVKELKElkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK--ELEEKEE------RLEELKKKLK 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 212 FVKGQIVILEETINVHEMeakasretIMRLASEVNREQKKAASctEEKEKLNQDLLSAVEAKEALEREVKIFQERLlagq 291
Cdd:PRK03918 349 ELEKRLEELEERHELYEE--------AKAKKEELERLKKRLTG--LTPEKLEKELEELEKAKEEIEEEISKITARI---- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 292 qvwDASKQEVSLLKKSSSELEKslkASQDAVTTSQSQYFSFREKIAALLRGRLSMTGSTEDTILEKIREMDSR------- 364
Cdd:PRK03918 415 ---GELKKEIKELKKAIEELKK---AKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKElrelekv 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 365 --EESRDRMVSQLEAQISELVEQLGKESgfHQKALQRAQKAENMLE---TLQGQLTHLEAELVSGgvlrDNLNFEKQKYL 439
Cdd:PRK03918 489 lkKESELIKLKELAEQLKELEEKLKKYN--LEELEKKAEEYEKLKEkliKLKGEIKSLKKELEKL----EELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 440 KFLDQLSQKMK-LDQMAAELGFDMRLDVvlarTEQLVRLES--NAVIENKTIAHNLQRKLKTQK---ERLESKELHMSLL 513
Cdd:PRK03918 563 KKLDELEEELAeLLKELEELGFESVEEL----EERLKELEPfyNEYLELKDAEKELEREEKELKkleEELDKAFEELAET 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 514 RQKIAQLEEEKQARTALVVERDNAHLT--IRNLQKKVERLQKELNTCRDLHTELKAKLADTNELKIKTLEQTKAIEDLNK 591
Cdd:PRK03918 639 EKRLEELRKELEELEKKYSEEEYEELReeYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEK 718
|
....*
gi 767943619 592 SRDQL 596
Cdd:PRK03918 719 ALERV 723
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
247-596 |
1.23e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 247 REqKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFqERLLAGQ-QVWDAS--KQEVSLLKKSSSELEKSLKASQDAVT 323
Cdd:COG3096 783 RE-KRLEELRAERDELAEQYAKASFDVQKLQRLHQAF-SQFVGGHlAVAFAPdpEAELAALRQRRSELERELAQHRAQEQ 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 324 TSQSQYFSFREKIaALLRGRLSMTGSTEDTILEkiremDSREESRDRMVSQLEAQIselveqlgkesgFHQKALQRAQKA 403
Cdd:COG3096 861 QLRQQLDQLKEQL-QLLNKLLPQANLLADETLA-----DRLEELREELDAAQEAQA------------FIQQHGKALAQL 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 404 ENMLETLQgqlthleaelvsggvlRDNLNFE--KQKYLKFLDQLSQkmkLDQMAAELGFdmrldvVLARTEQLVRLESNA 481
Cdd:COG3096 923 EPLVAVLQ----------------SDPEQFEqlQADYLQAKEQQRR---LKQQIFALSE------VVQRRPHFSYEDAVG 977
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 482 -VIENKTIAHNLQRKL-KTQKERLESKElhmsLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQKKVE---------- 549
Cdd:COG3096 978 lLGENSDLNEKLRARLeQAEEARREARE----QLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEelgvqadaea 1053
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 767943619 550 ---------RLQKELNTCRDLHTELKAKLAdTNELKIKTLEQ--TKAIEDLNKSRDQL 596
Cdd:COG3096 1054 eerarirrdELHEELSQNRSRRSQLEKQLT-RCEAEMDSLQKrlRKAERDYKQEREQV 1110
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
249-458 |
1.35e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 249 QKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAVTTSQSQ 328
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 329 YFSFREKIAALLRGRLSMTGSTEDTIL---EKIREMDSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAEN 405
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767943619 406 MLETLQGQLTHLEAELVSGGVLRDNLNFEKQKYLKFLDQLSQKMK-LDQMAAEL 458
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEeLEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
109-662 |
2.36e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 109 DRVQELEEESAALSTSKIRTEITAHAAIKENQELKKKVVELNEKLQKCSKENEE-NKKQVSKNCRKHEEFLTQLRDCLDP 187
Cdd:PTZ00121 1191 EELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKaEEERNNEEIRKFEEARMAHFARRQA 1270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 188 DERNDKASDEDLILKLRDLRKENEFVKGqivilEETINVHEMEAKASREtimRLASEVNREQKKAASCTEEKEKLNQDLL 267
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKA-----EEKKKADEAKKKAEEA---KKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 268 SAVEAKEALER----EVKIFQERLLAGQQVWDASKQEVSLLKKSSSELEKSLKASQDAvTTSQSQYFSFREKIAALLRGR 343
Cdd:PTZ00121 1343 KAAEAAKAEAEaaadEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA-EEDKKKADELKKAAAAKKKAD 1421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 344 LSMTGSTEDTILEKIREmdSREESRDRMVSQLEAQISELVEQLGKESGFHQKALQRAQKAEnmlETLQGQLTHLEAELVS 423
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE---EAKKADEAKKKAEEAK 1496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 424 GGVLRDNLNFEKQKYLKFLDQLSQKMKLDQMaaelgfdmRLDVVLARTEQLVRLESNAVIENKTIAHNLQR---KLKTQK 500
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEA--------KKAEEAKKADEAKKAEEKKKADELKKAEELKKaeeKKKAEE 1568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 501 ERLESKELHMSLLRQKIAQLEEEKQARTALVVERDNAHLTIRNLQK------KVERLQKElNTCRDLHTELKAKLADtne 574
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKaeeakiKAEELKKA-EEEKKKVEQLKKKEAE--- 1644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 575 lKIKTLEQTKAIEDLNKSRDQLEKMKEKAEKKlmsvKSELDTTEHEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREK 654
Cdd:PTZ00121 1645 -EKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
....*...
gi 767943619 655 QLADFREV 662
Cdd:PTZ00121 1720 ELKKAEEE 1727
|
|
| SH3_and_anchor |
TIGR04211 |
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved ... |
60-170 |
2.63e-03 |
|
SH3 domain protein; Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.
Pssm-ID: 275056 [Multi-domain] Cd Length: 198 Bit Score: 39.61 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 60 VKFECAQSELQDLRSKMLSKEVSCQELKAEMESYKENNARKSSLLTSLRDRVQELEEESAAlstskirteitAHAAIKEN 139
Cdd:TIGR04211 66 ERLPELQQELAELQEELAELQEQLAELRQENQELKQQLSTLEAELEELQKELERIKQISAN-----------AIELDEEN 134
|
90 100 110
....*....|....*....|....*....|.
gi 767943619 140 QELKKKVVELNEKLQKCSKENEENKKQVSKN 170
Cdd:TIGR04211 135 RELREELAELKQENEALEAENERLQENEQRR 165
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
359-667 |
2.82e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 359 REMDSREESRDRmvsqLEAQISELVEQLGKESGFHQKALQ----RAQKAENMLETLQGQLTHLEAELVSGGVLRDNLNFE 434
Cdd:TIGR02169 177 EELEEVEENIER----LDLIIDEKRQQLERLRREREKAERyqalLKEKREYEGYELLKEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 435 KQKYLKFLDQLSQKMKldqmAAElgfdMRLDVVLARTEQLVRLESNAVienktiahnlqrklktqKERLESKELHMSLLR 514
Cdd:TIGR02169 253 LEKLTEEISELEKRLE----EIE----QLLEELNKKIKDLGEEEQLRV-----------------KEKIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 515 QKIAQLEEEKQ----ARTALVVERDNAHLTIRNLQKKVERLQKEL-----------NTCRDLHTELKAKLADTNELKIKT 579
Cdd:TIGR02169 308 RSIAEKERELEdaeeRLAKLEAEIDKLLAEIEELEREIEEERKRRdklteeyaelkEELEDLRAELEEVDKEFAETRDEL 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 580 LEQTKAIEDLNKSRDQLEKMKEKAEKKLMSVKSELDttehEAKENKERARNMIEVVTSEMKTLKKSLEEAEKREKQLADF 659
Cdd:TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELA----DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
....*...
gi 767943619 660 REVVSQML 667
Cdd:TIGR02169 464 LSKYEQEL 471
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
85-280 |
4.79e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.00 E-value: 4.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 85 ELKAEMESYKennARKSSLLTSLRDRVQELEEESAALStsKIRTEItahAAIKENQELKKKVVELNEKLQ---KCSKENE 161
Cdd:PHA02562 224 ELVEEAKTIK---AEIEELTDELLNLVMDIEDPSAALN--KLNTAA---AKIKSKIEQFQKVIKMYEKGGvcpTCTQQIS 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 162 ENKKQVSKNCRKHEEFLTQLRDCLDPDERNDKASDE--DLILKLRDLRKENEFVKGQIVILEEtinvhemEAKASRETIM 239
Cdd:PHA02562 296 EGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEfnEQSKKLLELKNKISTNKQSLITLVD-------KAKKVKAAIE 368
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 767943619 240 RLASEVnreqkkaASCTEEKEKLNQDLLSAVEAKEALEREV 280
Cdd:PHA02562 369 ELQAEF-------VDNAEELAKLQDELDKIVKTKSELVKEK 402
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
61-537 |
7.10e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 61 KFECAQSELQDLRSKMLSKEVSCQELKAEMESyKENNARKSSLLTSLRDRVQELEEESAALSTSKIRTEITAHAAIKENQ 140
Cdd:PTZ00121 1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA-AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 141 ELKKKVVELNEKLQKCSKENEENKKQVSKncRKHEEFLTQLRDCLDPDERNDKASD----EDLILKLRDLRKENEFVKGQ 216
Cdd:PTZ00121 1402 EDKKKADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEEAKKADEAKKKAEEakkaEEAKKKAEEAKKADEAKKKA 1479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 217 ivilEETINVHEMEAKAsrETIMRLASEVNR---EQKKAASCTEEKEKLNQDLLSAVE----AKEALEREVKIFQERLLA 289
Cdd:PTZ00121 1480 ----EEAKKADEAKKKA--EEAKKKADEAKKaaeAKKKADEAKKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKK 1553
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 290 GQQVWDAskQEVSLLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALlrgrlsmtgstEDTILEKIREMDSREESRD 369
Cdd:PTZ00121 1554 AEELKKA--EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY-----------EEEKKMKAEEAKKAEEAKI 1620
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 370 RMVS-QLEAQISELVEQLGKESGFHQKALQRAQKAENMLETLQGQLTH-LEAELVSGGVLRDNLNFEKQKYLKFLDQLSQ 447
Cdd:PTZ00121 1621 KAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 448 KMKLDQMAAELGFDMRldvvlaRTEQLVRLESnaviENKTIAHNLQRKLKTQKERLESKELHMSlLRQKIAQLEEEKQAR 527
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKK------KAEELKKAEE----ENKIKAEEAKKEAEEDKKKAEEAKKDEE-EKKKIAHLKKEEEKK 1769
|
490
....*....|
gi 767943619 528 TALVVERDNA 537
Cdd:PTZ00121 1770 AEEIRKEKEA 1779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
222-421 |
7.88e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 222 ETINVHEMEAKASRETIMRLASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEALEREVKIFQERLLAGQQVWDASKQEv 301
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767943619 302 slLKKSSSELEKSLKASQDAVTTSQSQYFSFREKIAALLRgRLSMTGSTEDTILEKIREMDSREESRDRMVSQLEAQISE 381
Cdd:COG4942 99 --LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR-RLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767943619 382 LVEQLGKESGFHQKALQRAQKAENMLETLQGQLTHLEAEL 421
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| |
