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Conserved domains on  [gi|805753477|ref|XP_012135562|]
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PREDICTED: uncharacterized protein LOC100878278 [Megachile rotundata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Neugrin super family cl05754
Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and ...
 92-155 1.19e-05

Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation.


The actual alignment was detected with superfamily member pfam06413:

Pssm-ID: 428925  Cd Length: 218  Bit Score: 46.47  E-value: 1.19e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 805753477   92 PSFLTFVEKNEIKKLHDSDPEEWTPEKLSQSFPALPHAIKKVLKSHWVPkSVDAIIRYDSKVIE 155
Cdd:pfam06413   8 PRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRRVLKSKFVP-TLEQKLKQDQKVLK 70
 
Name Accession Description Interval E-value
Neugrin pfam06413
Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and ...
 92-155 1.19e-05

Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation.


Pssm-ID: 428925  Cd Length: 218  Bit Score: 46.47  E-value: 1.19e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 805753477   92 PSFLTFVEKNEIKKLHDSDPEEWTPEKLSQSFPALPHAIKKVLKSHWVPkSVDAIIRYDSKVIE 155
Cdd:pfam06413   8 PRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRRVLKSKFVP-TLEQKLKQDQKVLK 70
 
Name Accession Description Interval E-value
Neugrin pfam06413
Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and ...
 92-155 1.19e-05

Neugrin; This family consists of several mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation.


Pssm-ID: 428925  Cd Length: 218  Bit Score: 46.47  E-value: 1.19e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 805753477   92 PSFLTFVEKNEIKKLHDSDPEEWTPEKLSQSFPALPHAIKKVLKSHWVPkSVDAIIRYDSKVIE 155
Cdd:pfam06413   8 PRTLTWEAMEQIRYLHEEFPESWSVPRLAEGFDVSTDVIRRVLKSKFVP-TLEQKLKQDQKVLK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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