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Conserved domains on  [gi|984102171|ref|XP_015342379|]
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NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 [Marmota marmota marmota]

Protein Classification

NDUF_B4 domain-containing protein( domain architecture ID 10537755)

NDUF_B4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.70e-82

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


:

Pssm-ID: 429355  Cd Length: 124  Bit Score: 236.53  E-value: 3.70e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984102171    5 KYKPSRLATLPPTLDPAEYDISPETRKAQAERLAIRARLKREYLLQYNDPNRRGLIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 984102171   85 KNSLLGALFGIGPLFFWYYVFKTDRDRKEKLIQEGKLDRKFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.70e-82

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 236.53  E-value: 3.70e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984102171    5 KYKPSRLATLPPTLDPAEYDISPETRKAQAERLAIRARLKREYLLQYNDPNRRGLIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 984102171   85 KNSLLGALFGIGPLFFWYYVFKTDRDRKEKLIQEGKLDRKFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
PLN00009 PLN00009
cyclin-dependent kinase A; Provisional
 2-47 2.64e-03

cyclin-dependent kinase A; Provisional


Pssm-ID: 177649 [Multi-domain]  Cd Length: 294  Bit Score: 36.33  E-value: 2.64e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 984102171   2 SFPKYKPSRLATLPPTLDPAEYD-ISPETRKAQAERLAIRARLKREY 47
Cdd:PLN00009 240 AFPKWPPKDLATVVPTLEPAGVDlLSKMLRLDPSKRITARAALEHEY 286
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 5-128 3.70e-82

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 236.53  E-value: 3.70e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 984102171    5 KYKPSRLATLPPTLDPAEYDISPETRKAQAERLAIRARLKREYLLQYNDPNRRGLIEDPALIRWTYARSANIYPNFRPTP 84
Cdd:pfam07225   1 EYKPAPLATLPKTLDPAEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPHRRGLIEDPALTRWTYARSANIYPNFRPTP 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 984102171   85 KNSLLGALFGIGPLFFWYYVFKTDRDRKEKLIQEGKLDRKFNIS 128
Cdd:pfam07225  81 KTSLLGALFGVVPLFFYYYVFKTDRDRKEKLIQEGKLDRPFNLS 124
PLN00009 PLN00009
cyclin-dependent kinase A; Provisional
 2-47 2.64e-03

cyclin-dependent kinase A; Provisional


Pssm-ID: 177649 [Multi-domain]  Cd Length: 294  Bit Score: 36.33  E-value: 2.64e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 984102171   2 SFPKYKPSRLATLPPTLDPAEYD-ISPETRKAQAERLAIRARLKREY 47
Cdd:PLN00009 240 AFPKWPPKDLATVVPTLEPAGVDlLSKMLRLDPSKRITARAALEHEY 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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