|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
33-565 |
7.61e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 7.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 33 AERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLK---AQESIRQWKLKHKKLERALEKQSETV 109
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEleeAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 110 DELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 189
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 190 ESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQ 269
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 270 AKSRDEETATI---ITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLkAESLEEKNMAK 346
Cdd:COG1196 472 AALLEAALAELleeLAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA-LEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 347 IHRGQLEKLKSQCDRLTEeltqnENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESIL 426
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKA-----AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 427 GVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTEN 506
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEE 705
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1034586337 507 KESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQ 565
Cdd:COG1196 706 ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
41-351 |
1.00e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.00e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 41 QISELTRHAEdatkQAERYLselqqseALKEEAEKRREDLKLKAqesIRQWKLKHKKLERALEKQSETVDELTGKNNQIL 120
Cdd:COG1196 201 QLEPLERQAE----KAERYR-------ELKEELKELEAELLLLK---LRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 121 KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQ 200
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 201 SQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATI 280
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 281 ITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQ 351
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-553 |
1.42e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 1.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 2 NLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK 81
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 82 LKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSK 161
Cdd:COG1196 316 ERLEELEEE----LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 162 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAI 241
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 242 RADLANKLAEEERAK-KAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHF 320
Cdd:COG1196 472 AALLEAALAELLEELaEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 321 KKEKS----EAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISI 396
Cdd:COG1196 552 VVEDDevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 397 EEEHLRRMEEARLQLKDqllclETEQESILGVIGKEIDAACKTFSKDSVEKLkvfssgpdihydphRWLAESKTKLQWLC 476
Cdd:COG1196 632 LEAALRRAVTLAGRLRE-----VTLEGEGGSAGGSLTGGSRRELLAALLEAE--------------AELEELAERLAEEE 692
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1034586337 477 EELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKL 553
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
70-405 |
6.65e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 6.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 70 KEEAEKRRED-------LKLKAQESIRQwklkhkkLERaLEKQSETvdelTGKNNQILKEKDELKTQLYA-----ALQQI 137
Cdd:COG1196 174 KEEAERKLEAteenlerLEDILGELERQ-------LEP-LERQAEK----AERYRELKEELKELEAELLLlklreLEAEL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 138 ENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAEL 217
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 218 KKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKD 297
Cdd:COG1196 322 EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 298 LTSSLQsvktkHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLK 377
Cdd:COG1196 402 LEELEE-----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
330 340
....*....|....*....|....*...
gi 1034586337 378 LKYQCLKDQLEEREKHISIEEEHLRRME 405
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
11-342 |
9.24e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 9.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 11 EKQQLQML-DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQ----SEALKEEAEKRREDLKLKAQ 85
Cdd:TIGR02169 672 EPAELQRLrERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQleqeEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 86 EsIRQWKLKHKKLERALEKQSETVDELTGKNN------------QILKEKDELKTQLYAALQQIENLRKELNDVLTKRAL 153
Cdd:TIGR02169 752 E-IENVKSELKELEARIEELEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 154 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQE 233
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 234 SIKDLSAIRADLANKLAeeerAKKAVLKDLSDLTAQAKSRDEETAtIITQLKLERDVHQRELkdltSSLQSVKTKHEQNI 313
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLE----ALEEELSEIEDPKGEDEEIPEEEL-SLEDVQAELQRVEEEI----RALEPVNMLAIQEY 981
|
330 340 350
....*....|....*....|....*....|....
gi 1034586337 314 QELMKHF-----KKEKSEAENHIRTLKAESLEEK 342
Cdd:TIGR02169 982 EEVLKRLdelkeKRAKLEEERKAILERIEEYEKK 1015
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
42-392 |
3.05e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 3.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 42 ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKklERALEKQSetvdeLTGKNNQILK 121
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELAL-----LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 122 EKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKShqadlelEVKNSLDTIHRLESELKKQSKIQS 201
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANEISRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 202 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAksrdEETATII 281
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 282 TQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKK----EKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKS 357
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350
....*....|....*....|....*....|....*
gi 1034586337 358 QCDRLTEELTQNENENKKLKLKYQCLKDQLEEREK 392
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
32-337 |
2.27e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 2.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 32 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLK---AQESIRQWKLKHKKLERALEKQSET 108
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQisaLRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 109 VDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIH- 187
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAa 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 188 ------RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLK 261
Cdd:TIGR02168 836 terrleDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR 915
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034586337 262 DLsdltaqaksrdEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAE 337
Cdd:TIGR02168 916 EL-----------EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
3-431 |
2.39e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 66.97 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKS 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 KAQESIRQWKLK-HKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTKRALQEEELHSK 161
Cdd:TIGR04523 296 EISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLN-------EQISQLKKELTNSESENSEKQRELEEK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 162 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSai 241
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT-- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 242 radlanklaEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVkTKHEQNIQELMKHFK 321
Cdd:TIGR04523 447 ---------NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKL-NEEKKELEEKVKDLT 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 322 KEKSEAENHIRTLKAE---------SLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREK 392
Cdd:TIGR04523 517 KKISSLKEKIEKLESEkkekeskisDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK 596
|
410 420 430
....*....|....*....|....*....|....*....
gi 1034586337 393 HISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGK 431
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-539 |
6.12e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.11 E-value: 6.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDEL------KTQLYAALQQIENLRKELNDVLTKRALQEE 156
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLerleeeLEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 157 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAkLLEMQESIK 236
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL-AGAVAVLIG 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 237 DLSAIRADLANklAEEERAKKAVLKDLSDLTAQA---KSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNI 313
Cdd:COG1196 532 VEAAYEAALEA--ALAAALQNIVVEDDEVAAAAIeylKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLR 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 314 QELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR---------GQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLK 384
Cdd:COG1196 610 EADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrevtlegeGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 385 DQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIhydphrw 464
Cdd:COG1196 690 EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDL------- 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 465 laesktklqwlcEELKERENREKNLRHQL----ML-------CRQQLRNLTENKESelqcLFQQIERQEQLLDEIHREKR 533
Cdd:COG1196 763 ------------EELERELERLEREIEALgpvnLLaieeyeeLEERYDFLSEQRED----LEEARETLEEAIEEIDRETR 826
|
....*.
gi 1034586337 534 DLLEET 539
Cdd:COG1196 827 ERFLET 832
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
40-412 |
1.78e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.75 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 40 LQISELTRHAEDATKQAERYLSELQqseALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKLERALEKQSETVDELTGKN 116
Cdd:pfam15921 412 ITIDHLRRELDDRNMEVQRLEALLK---AMKSECQGQMERQMAAIQgknESLEKVSSLTAQLESTKEMLRKVVEELTAKK 488
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 117 nQILKEKDELKTQLYAALQQIENLRKELNDVLTKR------ALQE-EELHSKEEKLRDIKSHQADLELEVKNSLDTIHRL 189
Cdd:pfam15921 489 -MTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlKLQElQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEIL 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 190 ESELKKQSKIQSQ-------MKVEKAHLEEEI-------AELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERA 255
Cdd:pfam15921 568 RQQIENMTQLVGQhgrtagaMQVEKAQLEKEIndrrlelQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 256 KKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKTKheqniqeLMKHFKKEKSEAENHIRTLK 335
Cdd:pfam15921 648 VKDIKQERDQLLNEVKTSRNE----LNSLSEDYEVLKRNFRNKSEEMETTTNK-------LKMQLKSAQSELEQTRNTLK 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 336 AESLEEKNMAKI----------HRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLE--EREKHISIEEEHLRR 403
Cdd:pfam15921 717 SMEGSDGHAMKVamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELStvATEKNKMAGELEVLR 796
|
....*....
gi 1034586337 404 MEEARLQLK 412
Cdd:pfam15921 797 SQERRLKEK 805
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
32-582 |
2.56e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 32 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLE-RALEKQSETVD 110
Cdd:PTZ00121 1246 EEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEaKKADEAKKKAE 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 111 ELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDvlTKRALQEEELHSKEEKLrdiKSHQADLELEVKNSLDTIHRLE 190
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKK---KADAAKKKAEEKKKADEAKKKA 1400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 191 SELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsAIRADLANKLAEEER-AKKAVLKDLSDLTAQ 269
Cdd:PTZ00121 1401 EEDKKKAD-----ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKkAEEAKKKAEEAKKAD 1473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 270 AKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHfKKEKSEAENHIRTLKAESLEEKNMAKIHR 349
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK-ADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 350 GQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER--------EKHISIEEEHLRRMEEARLQlKDQLLCLETE 421
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieevmklyEEEKKMKAEEAKKAEEAKIK-AEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 422 QESILGVIGKEIDaacktfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKlqwLCEELKERENREKNLRHQLMLCRQQLR 501
Cdd:PTZ00121 1632 KKKVEQLKKKEAE------EKKKAEELKKAEEENKIKAAEEAKKAEEDKK---KAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 502 NLTE--NKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEM--GSLQPKLLFKLPPWEDASQTAVRNQSEAQFE 577
Cdd:PTZ00121 1703 KAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAkkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
|
....*
gi 1034586337 578 EKADR 582
Cdd:PTZ00121 1783 EELDE 1787
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-550 |
1.29e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 5 RELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK--- 81
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLErql 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 82 LKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSK 161
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 162 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVE---------KAHLEEEIAELKKSQAQDKAKLLEMQ 232
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEeleeeleelQEELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 233 ESIKDLSAIRADLA------NKLAEEERAKKAVLKDLSDLT--------------------------------------- 267
Cdd:TIGR02168 479 AAERELAQLQARLDslerlqENLEGFSEGVKALLKNQSGLSgilgvlselisvdegyeaaieaalggrlqavvvenlnaa 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 268 -----AQAKSR---------DEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHF-----------KK 322
Cdd:TIGR02168 559 kkaiaFLKQNElgrvtflplDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvddldnaleLA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 323 EKSEAENHIRTLKAES------------------LEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLK 384
Cdd:TIGR02168 639 KKLRPGYRIVTLDGDLvrpggvitggsaktnssiLERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 385 DQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRW 464
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 465 ------LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKES---ELQCLFQQIERQEQLLDEIHREKRDL 535
Cdd:TIGR02168 799 kalreaLDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEElseDIESLAAEIEELEELIEELESELEAL 878
|
650
....*....|....*
gi 1034586337 536 LEETQRKDEEMGSLQ 550
Cdd:TIGR02168 879 LNERASLEEALALLR 893
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
97-425 |
3.53e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 3.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 97 KLERALEKQsETVDELTGKNNQILKEKdelktqlyaaLQQIENLRKELNDVLTKRALQEEE--------LHSKEEKLRDI 168
Cdd:TIGR02169 171 KKEKALEEL-EEVEENIERLDLIIDEK----------RQQLERLRREREKAERYQALLKEKreyegyelLKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 169 KS----------HQADLELEVKNSLDTIHRLESELKKQS-KIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 237
Cdd:TIGR02169 240 EAierqlasleeELEKLTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 238 LSAIRAdlanKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELM 317
Cdd:TIGR02169 320 AEERLA----KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 318 KhFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIE 397
Cdd:TIGR02169 396 K-LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340
....*....|....*....|....*...
gi 1034586337 398 EEHLRRMEEARLQLKDQLLCLETEQESI 425
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARAS 502
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
11-408 |
8.49e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 8.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 11 EKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESirq 90
Cdd:PTZ00121 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA--- 1376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 91 wklkhKKLERALEKQSETV---DELTGKNNQILKEKDELKTQlYAALQQIENLRKELNDV-----LTKRALQE---EELH 159
Cdd:PTZ00121 1377 -----KKKADAAKKKAEEKkkaDEAKKKAEEDKKKADELKKA-AAAKKKADEAKKKAEEKkkadeAKKKAEEAkkaDEAK 1450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLRdiKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEE---------EIAELKKSQAQDKAKLLE 230
Cdd:PTZ00121 1451 KKAEEAK--KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakkaaeakkKADEAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 231 MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEE-------TATIITQLKLERDVHQRELKDLTSSLQ 303
Cdd:PTZ00121 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEdknmalrKAEEAKKAEEARIEEVMKLYEEEKKMK 1608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 304 SVKTKHEQNIQELMKHFKKEKsEAENHIRTLKAESLEEKNMAKihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCL 383
Cdd:PTZ00121 1609 AEEAKKAEEAKIKAEELKKAE-EEKKKVEQLKKKEAEEKKKAE----ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
410 420
....*....|....*....|....*
gi 1034586337 384 KDQLEEREKHISIEEEHLRRMEEAR 408
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELK 1708
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
73-429 |
2.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 2.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 73 AEKRREDLKLKAQESIRQWKLKHKKLERALEKqsetvdeLTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRA 152
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSS-------LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 153 LQEEELHSKEEKLRDIKshqadlelevknslDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKllEMQ 232
Cdd:TIGR02169 734 KLKERLEELEEDLSSLE--------------QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP--EIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 233 ESIKDLSAIRADLANKLAEEERAkkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS---SLQSVKTKH 309
Cdd:TIGR02169 798 AELSKLEEEVSRIEARLREIEQK----LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGkkeELEEELEEL 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 310 EQNIQEL---MKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLK------LKY 380
Cdd:TIGR02169 874 EAALRDLesrLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeeLSL 953
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1034586337 381 QCLKDQLEEREKHISIEE-------EHLRRMEEARLQLKDQLLCLETEQESILGVI 429
Cdd:TIGR02169 954 EDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
6-227 |
2.31e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 6 ELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQ 85
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL----R 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 86 ESIRQWKLKHKKLERALEKQSETVDELTGKN----NQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSK 161
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSpedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034586337 162 EEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAK 227
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
130-346 |
2.80e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 2.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 130 LYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAH 209
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 210 LEEEIAELK-----------KSQAQDKAKLLEMQESIKDLsAIRADLANKLAEEERAK----KAVLKDLSDLTAQAKSRD 274
Cdd:COG4942 95 LRAELEAQKeelaellralyRLGRQPPLALLLSPEDFLDA-VRRLQYLKYLAPARREQaeelRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034586337 275 EETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAK 346
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL-AELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2-544 |
1.29e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 2 NLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKE---EAEKRRE 78
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEkirELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 79 DLKLKaqesIRQWKLKHKKLERaLEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE-- 156
Cdd:PRK03918 270 ELKKE----IEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEElk 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 157 -----------ELHSKEEKLRDIKSHQADLE-LEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQD 224
Cdd:PRK03918 345 kklkelekrleELEERHELYEEAKAKKEELErLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 225 KAKLLEMQESIKDLSAIRADL-----ANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVhqRELKDLT 299
Cdd:PRK03918 425 KKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL--IKLKELA 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 300 SSLQSVKtkheqniQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSqcdrLTEELTQNENENKKLKLK 379
Cdd:PRK03918 503 EQLKELE-------EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEE 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 380 YQCLKDQLEERE-KHISIEEEHLRRMEEAR---LQLKDQLLCLETEQESIlgvigkeidAACKTFSKDSVEKlkvfssgp 455
Cdd:PRK03918 572 LAELLKELEELGfESVEELEERLKELEPFYneyLELKDAEKELEREEKEL---------KKLEEELDKAFEE-------- 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 456 dihydphrwLAESKTKLQWLCEELKERENREKNLRHqlmlcrQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDL 535
Cdd:PRK03918 635 ---------LAETEKRLEELRKELEELEKKYSEEEY------EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
....*....
gi 1034586337 536 LEETQRKDE 544
Cdd:PRK03918 700 KEELEEREK 708
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
49-392 |
1.44e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.98 E-value: 1.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 49 AEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT 128
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 129 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKA 208
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 209 HLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKkavlKDLSDLTAQAKSRDEEtatIITQLKLER 288
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE----EELEKLQEKLEQLEEE---LLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 289 DVHQRELKDLTSSLqSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 368
Cdd:pfam02463 384 ERLSSAAKLKEEEL-ELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLK 462
|
330 340
....*....|....*....|....
gi 1034586337 369 NENENKKLKLKYQCLKDQLEEREK 392
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQL 486
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-253 |
1.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 2 NLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQI------------------SELTRHAEDATKQAERylseL 63
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIeqlkeelkalrealdelrAELTLLNEEAANLRER----L 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 64 QQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKE 143
Cdd:TIGR02168 827 ESLERRIAATERRLEDL----EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 144 LNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNsldtihrleselkKQSKIQSQMKVEKAHLEEEIAELKKSQAQ 223
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDN-------------LQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
250 260 270
....*....|....*....|....*....|
gi 1034586337 224 DKAKLLEMQESIKDLSAIradlaNKLAEEE 253
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPV-----NLAAIEE 994
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
11-307 |
1.86e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 1.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 11 EKQQLQMLDRLKEIQNHfdtcEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDL----KLKAQE 86
Cdd:TIGR02169 219 EKREYEGYELLKEKEAL----ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 87 SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKtqlyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLR 166
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL-------AEIEELEREIEEERKRRDKLTEEYAELKEELE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 167 DIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLS 239
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDElkdyrekLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1034586337 240 AiradlanKLAEEERAKKAVLKDLSDLTAQAKSRDEEtatiITQLKLERDVHQRELKDLTSSLQSVKT 307
Cdd:TIGR02169 448 L-------EIKKQEWKLEQLAADLSKYEQELYDLKEE----YDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
49-279 |
2.03e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 49 AEDATKQAERYLSELQQSealKEEAEKRREDLKLKAQESIRQwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKT 128
Cdd:COG4942 18 QADAAAEAEAELEQLQQE---IAELEKELAALKKEEKALLKQ----LAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 129 QLYAALQQIENLRKELNDVLtkRALQEEELHSKEE----------------KLRDIKSHQADLELEVKNSLDTIHRLESE 192
Cdd:COG4942 91 EIAELRAELEAQKEELAELL--RALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 193 LKKQSKIQSQMKVEkahLEEEIAELKKSQAqdkakllEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 272
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKA-------ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*..
gi 1034586337 273 RDEETAT 279
Cdd:COG4942 239 AAERTPA 245
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
6-329 |
2.45e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 2.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 6 ELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAE-------RYLSELQQSEALKEEAEKRRE 78
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEakkaeekKKADELKKAEELKKAEEKKKA 1566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 79 DLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKE---KDELKTQLYAALQQIENLRKELNDVLTKRALQE 155
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEeakKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 156 ---EELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEeeiaELKKSQAQDKAKLLEMQ 232
Cdd:PTZ00121 1647 kkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE----ELKKKEAEEKKKAEELK 1722
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 233 ESiKDLSAIRADLANKLAEEERAKkavlkdlsdltAQAKSRDEETATIITQLKLERDVHQRELKDLTSSL--QSVKTKHE 310
Cdd:PTZ00121 1723 KA-EEENKIKAEEAKKEAEEDKKK-----------AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVieEELDEEDE 1790
|
330
....*....|....*....
gi 1034586337 311 QNIQELMKHFKKEKSEAEN 329
Cdd:PTZ00121 1791 KRRMEVDKKIKDIFDNFAN 1809
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
48-272 |
4.21e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 4.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 48 HAEDATKQAErylSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELK 127
Cdd:COG3883 13 FADPQIQAKQ---KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 128 TQLyAALQQIENLRKELNDVLTKRALQEeeLHSKEEKLRDIKSHQADLelevknsldtIHRLESELKKQSKIQSQMKVEK 207
Cdd:COG3883 90 ERA-RALYRSGGSVSYLDVLLGSESFSD--FLDRLSALSKIADADADL----------LEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034586337 208 AHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKS 272
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-550 |
4.28e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 4.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 351 QLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIG 430
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 431 KEIDAACKTfSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESE 510
Cdd:COG4942 108 ELLRALYRL-GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1034586337 511 LQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQ 550
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3-262 |
4.58e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 4.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHF-DTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLK 81
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIkDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 82 LKAQE---SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL 158
Cdd:TIGR02169 336 AEIEElerEIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 159 HSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDL 238
Cdd:TIGR02169 416 QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
250 260
....*....|....*....|....
gi 1034586337 239 SAiRADLANKLAEEERAKKAVLKD 262
Cdd:TIGR02169 496 EA-QARASEERVRGGRAVEEVLKA 518
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
84-278 |
7.00e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 7.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 84 AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEE 163
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL---GE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 164 KLRDIKSHQADLE-----LEVKNSLDTIHRLE----------SELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 228
Cdd:COG3883 91 RARALYRSGGSVSyldvlLGSESFSDFLDRLSalskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1034586337 229 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA 278
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
57-615 |
2.11e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 57 ERYLSELQQSEALKEEAEKRREDLKLKAQESI--RQWKLKHKKLERalekqsETVDELTGKNNQilkEKDELKTQLYAAL 134
Cdd:pfam15921 81 EEYSHQVKDLQRRLNESNELHEKQKFYLRQSVidLQTKLQEMQMER------DAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 135 QQIENLRKELNDVLTKRALQEEELH----SKEEKLRDIKSHQADLE------LEVKNSLDTIHrLESELKKQSKIQSQMK 204
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRkmmlSHEGVLQEIRSILVDFEeasgkkIYEHDSMSTMH-FRSLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 205 VEKAHLE------EEIAELKKSQAQDKAKLL--EMQESIKDLsairadlankLAEEERAKKAVLKDLSDLTAQAKSRDEE 276
Cdd:pfam15921 231 TEISYLKgrifpvEDQLEALKSESQNKIELLlqQHQDRIEQL----------ISEHEVEITGLTEKASSARSQANSIQSQ 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 277 TATIITQLKLERDVHQRELKDLTSS-------LQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKihr 349
Cdd:pfam15921 301 LEIIQEQARNQNSMYMRQLSDLESTvsqlrseLREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD--- 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 350 gQLEKLKSQCDRLTEELTQNENENKKL-------KLKYQCLKDQLEEREKHISIEEEHLRRME-EARLQLKDQLLCLETE 421
Cdd:pfam15921 378 -QLQKLLADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLKAMKsECQGQMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 422 QESILGVIGKEID-AACKTFSKDSVEKLK----VFSSGPDIHYDPHRWLAES--------------KTKLQWLCEELKER 482
Cdd:pfam15921 457 NESLEKVSSLTAQlESTKEMLRKVVEELTakkmTLESSERTVSDLTASLQEKeraieatnaeitklRSRVDLKLQELQHL 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 483 ENREKNLRHQLMLCrQQLRNLTENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLL-FKLppwe 561
Cdd:pfam15921 537 KNEGDHLRNVQTEC-EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQeFKI---- 611
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1034586337 562 dasqtaVRNQSEAQFEEKADRVIALETStQVALDHLESvpEKLSLLEDFKDFRD 615
Cdd:pfam15921 612 ------LKDKKDAKIRELEARVSDLELE-KVKLVNAGS--ERLRAVKDIKQERD 656
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
57-414 |
3.05e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.83 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 57 ERYLSELQQSEALKEEAEKRREDLK--LKAQESIRQwklKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLyaal 134
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEkfIKRTENIEE---LIKEKEKELEEVLREINEISSELPELREELEKLEKEV---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 135 QQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLEsELKKQSKIQSQMKVEKAHLEEEI 214
Cdd:PRK03918 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 215 AELKKSQAQDKAKLLEMQESIKDLSairaDLANKLAEEERAKKAVLKDLSDLTAQAKSRDEetatiITQLKLERDVHQRE 294
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEE-----AKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 295 LKDLTSslqsvktkheQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKS---QCDRLTEELTqnEN 371
Cdd:PRK03918 381 LTGLTP----------EKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgKCPVCGRELT--EE 448
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1034586337 372 ENKKLKLKYQC-LKDQLEEREKHISIEEEHLRRMEEARLQLKDQ 414
Cdd:PRK03918 449 HRKELLEEYTAeLKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
16-245 |
3.33e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 16 QMLDRLKEIQNHFDTceaerkhadlqISELTRHAEDATKQAERyLSELQQSEALKEEAEKRREDLK--------LKAQES 87
Cdd:COG4913 222 DTFEAADALVEHFDD-----------LERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEylraalrlWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 88 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA--------LQQIENLRKELNDVLTKRALQEEELH 159
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLA 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESI 235
Cdd:COG4913 370 ALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250
....*....|.
gi 1034586337 236 KD-LSAIRADL 245
Cdd:COG4913 450 AEaLGLDEAEL 460
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
49-423 |
3.61e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 3.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 49 AEDATKQAERYLSELQQSEALKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSetVDELTGKNNQILKEKDELKT 128
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEEL----EAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 129 QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQ-ADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEK 207
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 208 AHLEEEIAELKKSQAQDKAKLL----------------------EMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSD 265
Cdd:COG4717 230 EQLENELEAAALEERLKEARLLlliaaallallglggsllslilTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 266 LTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQnIQELMKHFKKEKSEAENH--IRTLKAESLEEKN 343
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE-AEELEEELQLEELEQEIAalLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 344 MAKIHRGQLEKLKSQCDRLTEELTQNENENKKL--KLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETE 421
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGELEELleALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
..
gi 1034586337 422 QE 423
Cdd:COG4717 469 GE 470
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
37-279 |
3.63e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.83 E-value: 3.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 37 HADLQISELTRHAEDATKQAERYLSEL----QQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDEL 112
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELdalqAELEELNEEYNELQAELE-ALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 113 ------TGKNNQIL------KEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVK 180
Cdd:COG3883 92 aralyrSGGSVSYLdvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 181 NsldtihrLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVL 260
Cdd:COG3883 172 E-------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 244
|
250
....*....|....*....
gi 1034586337 261 KDLSDLTAQAKSRDEETAT 279
Cdd:COG3883 245 SAAGAGAAGAAGAAAGSAG 263
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
210-586 |
3.86e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 3.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 210 LEEEIAELKKsQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAK-KAVLKDLSDLTAQAKSRDEETATIITQLKLER 288
Cdd:COG1196 198 LERQLEPLER-QAEKAERYRELKEELKELEAELLLLKLRELEAELEElEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 289 DVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQ 368
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDI-ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 369 NENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILG---VIGKEIDAACKTFSKDSV 445
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLErleRLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 446 EKLKVfssgpdihydpHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLL 525
Cdd:COG1196 436 EEEEE-----------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 526 DEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIAL 586
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEY 565
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
16-413 |
4.48e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 16 QMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESirqwKLKH 95
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE----RLKK 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 96 KKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDV--------LTKRALQEEE----LHSKEE 163
Cdd:PRK03918 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpVCGRELTEEHrkelLEEYTA 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 164 KLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKV--EKAHLEEEIAELKKSQAQDKAKLLEmqESIKDLSAI 241
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeQLKELEEKLKKYNLEELEKKAEEYE--KLKEKLIKL 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 242 RADLANkLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKH------EQNIQE 315
Cdd:PRK03918 538 KGEIKS-LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYlelkdaEKELER 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 316 LMKHFKKEKSEAENHIRTLKaeslEEKNMAKIHRGQLEKLKSQCD-----RLTEELTQNENENKKLKLKYQCLKDQLEER 390
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELA----ETEKRLEELRKELEELEKKYSeeeyeELREEYLELSRELAGLRAELEELEKRREEI 692
|
410 420
....*....|....*....|...
gi 1034586337 391 EKHISIEEEHLRRMEEARLQLKD 413
Cdd:PRK03918 693 KKTLEKLKEELEEREKAKKELEK 715
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
12-652 |
4.51e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 4.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 12 KQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQW 91
Cdd:PTZ00121 1063 KAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKA 1142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 92 KLKHKKLERALEKQSETVDEltGKNNQILKEKDELKtQLYAALQQIENLR-KELNDVLTKRALQEEELHSKEEKLRDIKS 170
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAED--ARKAEEARKAEDAK-KAEAARKAEEVRKaEELRKAEDARKAEAARKAEEERKAEEARK 1219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 171 HQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHlEEEIAELKKSQAQDKAKLLEMQESIKDLSAIR-ADLANKL 249
Cdd:PTZ00121 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE-EARMAHFARRQAAIKAEEARKADELKKAEEKKkADEAKKA 1298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 250 AEEERAKKAVLKdlsdltAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKS-EAE 328
Cdd:PTZ00121 1299 EEKKKADEAKKK------AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 329 NHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKK---LKLKYQCLK--DQLEEREKHISIEEEHLRR 403
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKadeAKKKAEEKKkaDEAKKKAEEAKKADEAKKK 1452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 404 MEEARlqlKDQLLCLETEQESilgvigKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKlqwlCEELKERE 483
Cdd:PTZ00121 1453 AEEAK---KAEEAKKKAEEAK------KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK----ADEAKKAE 1519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 484 NREKnlrhqlmlcRQQLRNLTENKESELQCLFQQIERQEQL--LDEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWE 561
Cdd:PTZ00121 1520 EAKK---------ADEAKKAEEAKKADEAKKAEEKKKADELkkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 562 DASQTAVRNQSEAQFEEKADRVIALETSTQVALDHLESVPEKLSLLEDFKDFRDSCSSSERTDGRYSKYRVRRNSLQHHQ 641
Cdd:PTZ00121 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKA 1670
|
650
....*....|.
gi 1034586337 642 DDTKYRTKSFK 652
Cdd:PTZ00121 1671 EEDKKKAEEAK 1681
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
3-392 |
5.08e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADL--QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDL 80
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEELRELEEELEELEAEL 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 81 KLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHS 160
Cdd:COG4717 173 AELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLL 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 161 KEE----KLRDIKSHQADLELEVKNSLDTI---------------HRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQ 221
Cdd:COG4717 253 LIAaallALLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQALPALEELEEEELEELLAALGLPP 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 222 AQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSS 301
Cdd:COG4717 333 DLSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 302 LQSvktkHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEELTQNENENK--KLKLK 379
Cdd:COG4717 411 LEE----LLGELEELLEALDEEELEEELEELEEELEELEE---------ELEELREELAELEAELEQLEEDGElaELLQE 477
|
410
....*....|...
gi 1034586337 380 YQCLKDQLEEREK 392
Cdd:COG4717 478 LEELKAELRELAE 490
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
50-227 |
1.10e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.62 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 50 EDATKQAERYlSELQQSEAlKEEAEKRREDLklkaQESIRQWKLKHKKLERALEKQSETVDEltgKNNQILKEKDELKtq 129
Cdd:PRK12704 45 EEAKKEAEAI-KKEALLEA-KEEIHKLRNEF----EKELRERRNELQKLEKRLLQKEENLDR---KLELLEKREEELE-- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 130 lyaalQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADlelEVKNSLdtIHRLESELKKqskiqsqmkvEKAH 209
Cdd:PRK12704 114 -----KKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---EAKEIL--LEKVEEEARH----------EAAV 173
|
170
....*....|....*...
gi 1034586337 210 LEEEIAELKKSQAQDKAK 227
Cdd:PRK12704 174 LIKEIEEEAKEEADKKAK 191
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
3-377 |
1.66e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.54 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV 877
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 K-AQESIRQWKLKHKKLERALEKQSETVDELTGKNNQI---LKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEE-- 156
Cdd:COG5022 878 ElAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLssdLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPEln 957
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 157 ELHSKEEKLRD--------IKSHQAdLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAEL---------KK 219
Cdd:COG5022 958 KLHEVESKLKEtseeyedlLKKSTI-LVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVaelqsaskiIS 1036
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 220 SQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKL-ERDVHQRELKDL 298
Cdd:COG5022 1037 SESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVtNRNLVKPANVLQ 1116
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 299 TSSLQSVKTKHEQNIQEL-------MKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR-GQLEKLKSQCDRLTEELTQNE 370
Cdd:COG5022 1117 FIVAQMIKLNLLQEISKFlsqlvntLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFaALSEKRLYQSALYDEKSKLSS 1196
|
....*..
gi 1034586337 371 NENKKLK 377
Cdd:COG5022 1197 SEVNDLK 1203
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
11-266 |
1.85e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 47.76 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 11 EKQQLQMLDR-------LKEIQNHFdtceAERKHADLQISELTRHAEDATKQAERY---LSELQQSeALKE------EAE 74
Cdd:COG0497 140 PDAQRELLDAfagleelLEEYREAY----RAWRALKKELEELRADEAERARELDLLrfqLEELEAA-ALQPgeeeelEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 75 KRR----EDLKLKAQESIRQwkLKH---------KKLERALEKQSETVDELtgknnqilkekDELKTQLYAALQQIENLR 141
Cdd:COG0497 215 RRRlsnaEKLREALQEALEA--LSGgeggaldllGQALRALERLAEYDPSL-----------AELAERLESALIELEEAA 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 142 KELNDVLTKRALQEEELHSKEEKLRDIKS----HQADLElEVknsLDTIHRLESELKKQSkiqsqmkvekaHLEEEIAEL 217
Cdd:COG0497 282 SELRRYLDSLEFDPERLEEVEERLALLRRlarkYGVTVE-EL---LAYAEELRAELAELE-----------NSDERLEEL 346
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1034586337 218 KKSQAQDKAKLLEMQEsikDLSAIRADLANKLAeeerakKAVLKDLSDL 266
Cdd:COG0497 347 EAELAEAEAELLEAAE---KLSAARKKAAKKLE------KAVTAELADL 386
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
6-605 |
2.51e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 6 ELENGEKQQLQMLDrlKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSE-LQQSEALKEEAEKRREDLKLkA 84
Cdd:pfam12128 283 ETSAELNQLLRTLD--DQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPSWQSELEN-L 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 85 QESIRQWKLKHKKLERALEKQ-----SETVDELTGKNNQ---ILKEKDELKTQLYAALQQIEN-LRKELNDVLTKRALQE 155
Cdd:pfam12128 360 EERLKALTGKHQDVTAKYNRRrskikEQNNRDIAGIKDKlakIREARDRQLAVAEDDLQALESeLREQLEAGKLEFNEEE 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 156 EELHSK--EEKLR-DIKSHQADLELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAHLEEEIAELKKSQAQDK-----AK 227
Cdd:pfam12128 440 YRLKSRlgELKLRlNQATATPELLLQLENFDERIERAREEQEAANA-----EVERLQSELRQARKRRDQASEAlrqasRR 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 228 LLEMQESIKDLSAIRADLANKLAEEERAKKAVLK---------------DLSDLTAQAKSRDEETATIITqLKLER---- 288
Cdd:pfam12128 515 LEERQSALDELELQLFPQAGTLLHFLRKEAPDWEqsigkvispellhrtDLDPEVWDGSVGGELNLYGVK-LDLKRidvp 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 289 ------DVHQRELKDLTSSLQSVKTKHEQNIQELM---KHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEK----L 355
Cdd:pfam12128 594 ewaaseEELRERLDKAEEALQSAREKQAAAEEQLVqanGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKknkaL 673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 356 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEArlQLKDQLLCLETEQESILGVIGKEIDA 435
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEG--ALDAQLALLKAAIAARRSGAKAELKA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 436 aCKTFSKDSVEKLKVfssGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 515
Cdd:pfam12128 752 -LETWYKRDLASLGV---DPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQ 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 516 QQIERQEQ----LLDEIHREKRDLLEETQRKDEEMGSL---QPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIALET 588
Cdd:pfam12128 828 QQLARLIAdtklRRAKLEMERKASEKQQVRLSENLRGLrceMSKLATLKEDANSEQAQGSIGERLAQLEDLKLKRDYLSE 907
|
650
....*....|....*..
gi 1034586337 589 STQVALDHLESVPEKLS 605
Cdd:pfam12128 908 SVKKYVEHFKNVIADHS 924
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
4-550 |
2.76e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 4 TRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISE-LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEkELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQ 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 ------KAQESIRQWKLKHKKLERALEK-----QSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKR 151
Cdd:TIGR00618 265 lrarieELRAQEAVLEETQERINRARKAaplaaHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 152 ALqEEELHSKEEKLRDikshQADLELEVKNSLDTIHRLESELKKQSKIQSQMKvekahleeeiaELKKSQAQDKAKLLEM 231
Cdd:TIGR00618 345 RL-LQTLHSQEIHIRD----AHEVATSIREISCQQHTLTQHIHTLQQQKTTLT-----------QKLQSLCKELDILQRE 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 232 QESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAksrdEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQ 311
Cdd:TIGR00618 409 QATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI----TCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQ 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 312 --NIQELMKHFKKEKSEAENHIRtlkaESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEE 389
Cdd:TIGR00618 485 etRKKAVVLARLLELQEEPCPLC----GSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 390 REKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPH-----RW 464
Cdd:TIGR00618 561 LKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHlqqcsQE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 465 LAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNltENKESELQCLFQQIERQEQLLDEIHREKRDLLEETQRKDE 544
Cdd:TIGR00618 641 LALKLTALHALQLTLTQERVREHALSIRVLPKELLASR--QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDR 718
|
....*.
gi 1034586337 545 EMGSLQ 550
Cdd:TIGR00618 719 EFNEIE 724
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1-343 |
3.62e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 3.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 1 MNLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDL 80
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 81 K---LKAQESIR-------QWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTK 150
Cdd:TIGR04523 432 KetiIKNNSEIKdltnqdsVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 151 RALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKqskiqSQMKVEKAHLEEEIAELKKSQAQDKAKLLE 230
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 231 MQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAK----------SRDEETATIITQLKLERDVHQRELKDLTS 300
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEklssiiknikSKKNKLKQEVKQIKETIKEIRNKWPEIIK 666
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1034586337 301 SLQSVKTKhEQNIQELMKHFKKEKS-----EAENHIRTLKAESLEEKN 343
Cdd:TIGR04523 667 KIKESKTK-IDDIIELMKDWLKELSlhykkYITRMIRIKDLPKLEEKY 713
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
24-402 |
3.72e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.34 E-value: 3.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 24 IQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQ---ESIRQWKLKHKKLER 100
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEearEAVEDRREEIEELEE 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 101 ALEKQSETV-------DELTGKNNQILKEKDELK---TQLYAALQQIENLRKELNDVL-----------TKRALQEEELH 159
Cdd:PRK02224 392 EIEELRERFgdapvdlGNAEDFLEELREERDELRereAELEATLRTARERVEEAEALLeagkcpecgqpVEGSPHVETIE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLRDIKSHQADLELEVKNSLDTIHRLEsELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLS 239
Cdd:PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 240 A---IRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKlerdvhqrELKDLTSSLQSVKTKHEQnIQEL 316
Cdd:PRK02224 551 AeaeEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLA--------AIADAEDEIERLREKREA-LAEL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 317 MKHFKKEKSEAENHIRTLkAESLEEKNMAKIhRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEE----REK 392
Cdd:PRK02224 622 NDERRERLAEKRERKREL-EAEFDEARIEEA-REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEEleelRER 699
|
410
....*....|
gi 1034586337 393 HISIEEEHLR 402
Cdd:PRK02224 700 REALENRVEA 709
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
125-280 |
5.06e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 5.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 125 ELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELK--KQSKIQSQ 202
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034586337 203 MKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDL-SDLTAQAKSRDEETATI 280
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELeAELEELEAEREELAAKI 172
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-609 |
5.60e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 61 SELQQSEALKEEAEKRREDLKLKAQEsirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENL 140
Cdd:PRK02224 220 EEIERYEEQREQARETRDEADEVLEE--------HEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEEL 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 141 RKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKS 220
Cdd:PRK02224 292 EEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 221 QAQDKAKLLEMQESIKDLsairadlanklaEEErakkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS 300
Cdd:PRK02224 372 LEEAREAVEDRREEIEEL------------EEE------IEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 301 SLQSVKTKHEQNiQELMKHFK----KEKSEAENHIRTL-----KAESLEEknmakihrgQLEKLKSQCDRLTEELTQNEn 371
Cdd:PRK02224 434 TLRTARERVEEA-EALLEAGKcpecGQPVEGSPHVETIeedreRVEELEA---------ELEDLEEEVEEVEERLERAE- 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 372 ENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQEsilgviGKEIDAACKTFSKDSV-EKLKV 450
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE------EKREAAAEAEEEAEEArEEVAE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 451 FSSGpdihydphrwLAESKTKLQWLcEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDEIHR 530
Cdd:PRK02224 577 LNSK----------LAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 531 EKrdlLEETQRKDEEMGSLQPKLLFKLPPWEDASQT------AVRNQSEaQFEEKADRVIALETStqvaLDHLESVPEKL 604
Cdd:PRK02224 646 AR---IEEAREDKERAEEYLEQVEEKLDELREERDDlqaeigAVENELE-ELEELRERREALENR----VEALEALYDEA 717
|
....*
gi 1034586337 605 SLLED 609
Cdd:PRK02224 718 EELES 722
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
24-527 |
7.56e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 7.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 24 IQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQ--QSEALKEEA---------EKRREDLKLKAQESIRQWK 92
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiiQEQARNQNSmymrqlsdlESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 93 LKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNdvLTKRalQEEELHSKEEKLRDIKSHq 172
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS--LEKE--QNKRLWDRDTGNSITIDH- 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 173 adLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAqdkakLLEMQESIKDLsairadlANKLAE 251
Cdd:pfam15921 417 --LRRELDDRNMEVQRLEALLKAmKSECQGQMERQMAAIQGKNESLEKVSS-----LTAQLESTKEM-------LRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 252 EERAKKAVLKD----LSDLTAQAKSRD---EETATIITQLKLERDVHQRELkdltsslQSVKTKHEqniqelmkHFKKEK 324
Cdd:pfam15921 483 ELTAKKMTLESsertVSDLTASLQEKEraiEATNAEITKLRSRVDLKLQEL-------QHLKNEGD--------HLRNVQ 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 325 SEAEnhirTLKAESLEEKNMAKIHRGQLEKLksqcdrlteelTQNENENKKLKLKYQCLKDQLEerekhisieeehlRRM 404
Cdd:pfam15921 548 TECE----ALKLQMAEKDKVIEILRQQIENM-----------TQLVGQHGRTAGAMQVEKAQLE-------------KEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 405 EEARLQLKDQLLCLETEQESIlgvigKEIDAackTFSKDSVEKLKVFSSGPDihydPHRWLAESKTKLQWLCEELKEREN 484
Cdd:pfam15921 600 NDRRLELQEFKILKDKKDAKI-----RELEA---RVSDLELEKVKLVNAGSE----RLRAVKDIKQERDQLLNEVKTSRN 667
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1034586337 485 REKNLRHQLMLCRQQLRNLTENKESELQCLFQQIERQEQLLDE 527
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3-617 |
7.65e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 7.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 KAQE---SIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELH 159
Cdd:TIGR02169 372 ELEEvdkEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLS 239
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLG 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 240 AIRAD--LANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTS----------------- 300
Cdd:TIGR02169 532 SVGERyaTAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSedgvigfavdlvefdpk 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 301 ----------------------------------------------------SLQSVKTKHEQNIQEL----------MK 318
Cdd:TIGR02169 612 yepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsraprGGILFSRSEPAELQRLrerleglkreLS 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 319 HFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEE 398
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 399 EHLRRMEEARLQLKDQLLcleteqESILGVIGKEIDAACKTFSKDSveklkvfssgpDIHYDPHRWLAESKTKLQWLCEE 478
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLS------HSRIPEIQAELSKLEEEVSRIE-----------ARLREIEQKLNRLTLEKEYLEKE 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 479 LKERENREKNLRHQLMLCRQQLRNLTENKESelqcLFQQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKllfklp 558
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK------ 904
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034586337 559 pwedasqtavRNQSEAQFEEKADRVIALETSTQVALDHL----------ESVPEKLSLLEDFKDFRDSC 617
Cdd:TIGR02169 905 ----------IEELEAQIEKKRKRLSELKAKLEALEEELseiedpkgedEEIPEEELSLEDVQAELQRV 963
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
45-248 |
8.03e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 45 LTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESirqwklkhkKLERALEKQSETVDELTGKNNQILKEKD 124
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV---------DLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 125 ELKTQLYAALQQIENLRKELNDVLTKRALQE--EELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQS-KIQS 201
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAqRILA 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1034586337 202 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANK 248
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
88-298 |
8.92e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 8.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 88 IRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKT-----QLYAALQQIENLRKELNDVLTKRALQ--EEELHS 160
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELlepirELAERYAAARERLAELEYLRAALRLWfaQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 161 KEEKLRDIKSHQADLELEV---KNSLDTIHRLESELKKQskIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD 237
Cdd:COG4913 293 LEAELEELRAELARLEAELerlEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 238 LSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDL 298
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
32-399 |
9.33e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.72 E-value: 9.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 32 EAERKHADLQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKlkaqESIRQWKLKHKKLERALEKQSETVDE 111
Cdd:COG5185 193 SELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKGFQDPE----SELEDLAQTSDKLEKLVEQNTDLRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 112 LTGKNNQILKEKDELKTQLyaaLQQIENLRKELNDVlTKRALQEEELHSKEEKLR--DIKSHQADLELEVKNSLDtihRL 189
Cdd:COG5185 269 KLGENAESSKRLNENANNL---IKQFENTKEKIAEY-TKSIDIKKATESLEEQLAaaEAEQELEESKRETETGIQ---NL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 190 ESELKK-QSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQesikdLSAIRADLANKLAEEERAKKAVLKDLSDLTA 268
Cdd:COG5185 342 TAEIEQgQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDT-----IESTKESLDEIPQNQRGYAQEILATLEDTLK 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 269 QAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQelmkhfkKEKSEAENHIRTLKAESLEEKNmakih 348
Cdd:COG5185 417 AADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQ-------SRLEEAYDEINRSVRSKKEDLN----- 484
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 349 rGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEE 399
Cdd:COG5185 485 -EELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARG 534
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
194-547 |
9.40e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 9.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 194 KKQSKIQSQmKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQaksr 273
Cdd:TIGR02168 667 KTNSSILER-RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE---- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 274 deetatiITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELmKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLE 353
Cdd:TIGR02168 742 -------VEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL-AEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 354 KLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESIlgvigKEI 433
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL-----EEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 434 DAACKTFSKDSVEKLKVfssgpdihydphrwLAESKTKLQWLCEELKERENREKNLRHQLmlcRQQLRNLTENKESELQC 513
Cdd:TIGR02168 889 LALLRSELEELSEELRE--------------LESKRSELRRELEELREKLAQLELRLEGL---EVRIDNLQERLSEEYSL 951
|
330 340 350
....*....|....*....|....*....|....
gi 1034586337 514 LFQQIERQEQLLDEIHREKRDLLEETQRKDEEMG 547
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
98-313 |
1.15e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 98 LERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEKLRDIKSHQADLEL 177
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP---SAALNKLNTAAAKIKS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 178 EVKNSLDTIH-------------RLESELKKQSKIQSQMKVekahLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRAD 244
Cdd:PHA02562 270 KIEQFQKVIKmyekggvcptctqQISEGPDRITKIKDKLKE----LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNK 345
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034586337 245 LANK---LAEEERAKKAVLKDLSDLTAQAKSRDEETATIitqlklerdvhQRELKDLTSSLQS-VKTKHEQNI 313
Cdd:PHA02562 346 ISTNkqsLITLVDKAKKVKAAIEELQAEFVDNAEELAKL-----------QDELDKIVKTKSElVKEKYHRGI 407
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
83-425 |
1.20e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 KAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEEL---H 159
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQ----SKIQSQMKVEKAHLEEEIAELKKSQA---QDKAKLLEMQ 232
Cdd:TIGR04523 208 KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKtteiSNTQTQLNQLKDEQNKIKKQLSEKQKeleQNNKKIKELE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 233 ESIKDLSAIRADLANKLAEE-ERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQ 311
Cdd:TIGR04523 288 KQLNQLKSEISDLNNQKEQDwNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 312 NIQELMKhFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEERE 391
Cdd:TIGR04523 368 KQNEIEK-LKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
330 340 350
....*....|....*....|....*....|....
gi 1034586337 392 KHISIEEEHLRRMEEARLQLKDQLLCLETEQESI 425
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
306-622 |
1.22e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 306 KTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEknmakihrgQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKD 385
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREYEGYELLKEKEALER---------QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 386 QLEEREKHISieeehlRRMEEARLQLKDQLLCLETEQESILGVIgkeidAACKTFSKDSVEKLKVFSSGPDIHYDPHRWL 465
Cdd:TIGR02169 273 LLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSI-----AEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 466 AESKTKLQWLCEELKErenREKNLRHQLMLCRQQLRNL-TENKES--ELQCLFQQIERQEQLLDEIHREKRDLLEETQRK 542
Cdd:TIGR02169 342 EREIEEERKRRDKLTE---EYAELKEELEDLRAELEEVdKEFAETrdELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 543 DEEMGSLQPKLlfklppwedASQTAVRNQSEAQFEEKADRVIALETSTQVALDHLESVPEKLS-LLEDFKDFRDSCSSSE 621
Cdd:TIGR02169 419 SEELADLNAAI---------AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYdLKEEYDRVEKELSKLQ 489
|
.
gi 1034586337 622 R 622
Cdd:TIGR02169 490 R 490
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
51-305 |
3.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 51 DATKQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQ------SETVDELTGKNNQILKEKD 124
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALE-AELDALQERREALQRLAEYSWDEidvasaEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 125 ELKT---QLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTihRLEsELKKQSKIQS 201
Cdd:COG4913 686 DLAAleeQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LLE-ERFAAALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 202 QMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIK-----DLSAIRADLANklAEEERAKKAVLK--DLSDLTAQAKSR- 273
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaETADLDADLES--LPEYLALLDRLEedGLPEYEERFKELl 840
|
250 260 270
....*....|....*....|....*....|....*.
gi 1034586337 274 ----DEETATIITQLKLERDVHQRELKDLTSSLQSV 305
Cdd:COG4913 841 nensIEFVADLLSKLRRAIREIKERIDPLNDSLKRI 876
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
36-557 |
3.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 36 KHADLQISELTRHAEDATKQAERYLSELQQSEALKEEaEKRREDLKLKAQESIRQWKLKHKKLERALEkqseTVDELTGK 115
Cdd:TIGR04523 138 KNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENE-LNLLEKEKLNIQKNIDKIKNKLLKLELLLS----NLKKKIQK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 116 NNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK 195
Cdd:TIGR04523 213 NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 196 QSKIQSQMKVEKAhlEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 275
Cdd:TIGR04523 293 LKSEISDLNNQKE--QDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 276 EtatiITQLKLERDVHQRELKDLTSSLQSVKTK------HEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR 349
Cdd:TIGR04523 371 E----IEKLKKENQSYKQEIKNLESQINDLESKiqnqekLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 350 GQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVI 429
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 430 GKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPhrwLAESKTKLQWLCEELKERENREKNlrhqlmlCRQQLRNLTENKES 509
Cdd:TIGR04523 527 EKLESEKKEKESKISDLEDELNKDDFELKKEN---LEKEIDEKNKEIEELKQTQKSLKK-------KQEEKQELIDQKEK 596
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1034586337 510 ELQCLFQQIERQEQLLDEIHREkrdlLEETQRKDEEMGSLQPKLLFKL 557
Cdd:TIGR04523 597 EKKDLIKEIEEKEKKISSLEKE----LEKAKKENEKLSSIIKNIKSKK 640
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
147-342 |
3.65e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 147 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKA 226
Cdd:COG3883 7 AAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERRE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 227 KLLE----MQESIKDLSAI--------------RADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLER 288
Cdd:COG3883 87 ELGEraraLYRSGGSVSYLdvllgsesfsdfldRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1034586337 289 DVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEK 342
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
206-390 |
4.19e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 4.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 206 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQL- 284
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALy 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 285 -------KLERDVHQRELKDLTSSLQSVKTKHEQNiQELMKHFKKEKSEAENH---IRTLKAESLEEKNMAKIHRGQLEK 354
Cdd:COG3883 97 rsggsvsYLDVLLGSESFSDFLDRLSALSKIADAD-ADLLEELKADKAELEAKkaeLEAKLAELEALKAELEAAKAELEA 175
|
170 180 190
....*....|....*....|....*....|....*.
gi 1034586337 355 LKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 390
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
12-176 |
5.51e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 12 KQQLQMLDRLKEIQNHFdtcEAERKHADLQiSELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDL-------KLKA 84
Cdd:COG4913 268 RERLAELEYLRAALRLW---FAQRRLELLE-AELEELRAELARLEAELERLEARLDALREELDELEAQIrgnggdrLEQL 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 85 QESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELhskEEK 164
Cdd:COG4913 344 EREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL---RRE 420
|
170
....*....|..
gi 1034586337 165 LRDIKSHQADLE 176
Cdd:COG4913 421 LRELEAEIASLE 432
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
154-425 |
6.20e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 154 QEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESE---LKKQSKIQSQMKVE-----------KAHLEEEIAELKK 219
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEknaLQEQLQAETELCAEaeemrarlaarKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 220 SQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQ---LKLERDVHQRELK 296
Cdd:pfam01576 83 RLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQnskLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 297 DLTS----------SLQSVKTKHEQNIQELMKHFKKE---KSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLT 363
Cdd:pfam01576 163 EFTSnlaeeeekakSLSKLKNKHEAMISDLEERLKKEekgRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKE 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1034586337 364 EELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESI 425
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL 304
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-545 |
7.00e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 2 NLTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERYLS--------------ELQQSE 67
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvaqlelqiaslnnEIERLE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 68 ALKEEAEKRREDLKLKAQEsirqwkLKHKKLERALEKQSETVDELtgknNQILKEKDELKTQLYAALQQIENLRKELNDV 147
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEE------LLKKLEEAELKELQAELEEL----EEELEELQEELERLEEALEELREELEEAEQA 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 148 LTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKK-QSKIQSQMKVEKA-------HLE-------- 211
Cdd:TIGR02168 477 LDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlSELISVDEGYEAAieaalggRLQavvvenln 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 212 ---EEIAELKKSQ--------------AQDKAKLLEMQESIKDLSAIRADLANKLAEEERA------KKAVLKDLSDLTA 268
Cdd:TIGR02168 557 aakKAIAFLKQNElgrvtflpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDNALE 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 269 QAKS-----------------------RDEETATIITQLKLERDVHQRELKDLTSSLQSVktkhEQNIQELmkhfKKEKS 325
Cdd:TIGR02168 637 LAKKlrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKIEELEEKIAEL----EKALAEL----RKELE 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 326 EAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRME 405
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 406 EARLQLKDQLLCLETEQESILGVIGKE-IDAACKTFSKDSVEklkvfssgpdihydphRWLAESKTKLQWLCEELKEREN 484
Cdd:TIGR02168 789 AQIEQLKEELKALREALDELRAELTLLnEEAANLRERLESLE----------------RRIAATERRLEDLEEQIEELSE 852
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 485 REKNLRHQLMLCRQQLRNLtenkESELQCLFQQIERQEQLLDEiHREKRDLLEETQRKDEE 545
Cdd:TIGR02168 853 DIESLAAEIEELEELIEEL----ESELEALLNERASLEEALAL-LRSELEELSEELRELES 908
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
63-214 |
7.36e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.77 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 63 LQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkEKDELKTQLYAALQQIENLRK 142
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR---------EREELQREEERLVQKEEQLDA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 143 ELNDVltkrALQEEELHSKEEKL------RDIKSHQADLELEVKNSLDT-------IHRLESELKKQSKIQSQMKVEKAH 209
Cdd:PRK12705 96 RAEKL----DNLENQLEEREKALsareleLEELEKQLDNELYRVAGLTPeqarkllLKLLDAELEEEKAQRVKKIEEEAD 171
|
....*
gi 1034586337 210 LEEEI 214
Cdd:PRK12705 172 LEAER 176
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
19-328 |
7.88e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 7.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 19 DRLKEIQNHFDTCEAERKHADLQISELTRHAEDATKQAERY--LSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHK 96
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASAEREIAELE-AELERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 97 KLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQE----EELHSKEEKLRDIKSHQ 172
Cdd:COG4913 689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELrallEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 173 ADLELEVKNSLDTIHRLESEL-KKQSKIQSQMKVEKAHLEEEIA----------ELKKS---QAQDKAKLLEMQESIKDL 238
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELeRAMRAFNREWPAETADLDADLEslpeylalldRLEEDglpEYEERFKELLNENSIEFV 848
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 239 sairADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVH--QRELKDLTSSLQ----SVKTKHEQN 312
Cdd:COG4913 849 ----ADLLSKLRRAIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVRefRQELRAVTSGASlfdeELSEARFAA 924
|
330
....*....|....*.
gi 1034586337 313 IQELMKHFKKEKSEAE 328
Cdd:COG4913 925 LKRLIERLRSEEEESD 940
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
54-554 |
9.74e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 54 KQAERYLSELQQSEALKEEAEKRREDLKlKAQESIRQWKLKHKKLERALEKQSETVDELtgknnqilkekdELKTQLYAA 133
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREELEKL------------EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 134 LQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLElEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE 213
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELA-ELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 214 IAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKdLSDLTAQAKSRDEETATIITQLKLERDVhqr 293
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA-LLALLGLGGSLLSLILTIAGVLFLVLGL--- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 294 eLKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHR------GQLEKLKSQCDRLTEELT 367
Cdd:COG4717 286 -LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLelldriEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 368 QNENENKKLKLKYQCLKDQLEEREKHISIEEEhLRRMEEARLQLKDQLLCLETEQESILGVIGKEidaacktfskdsvek 447
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEE--------------- 428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 448 lkvfssgpdihydphrwlaESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKesELQCLFQQIERQEQLLDE 527
Cdd:COG4717 429 -------------------ELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG--ELAELLQELEELKAELRE 487
|
490 500 510
....*....|....*....|....*....|...
gi 1034586337 528 IHREK------RDLLEETQRKDEEmgSLQPKLL 554
Cdd:COG4717 488 LAEEWaalklaLELLEEAREEYRE--ERLPPVL 518
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
98-280 |
1.29e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 98 LERALEKQSETVDELTGKNNQILKEKDElktqlyaalqqienlrkelndvlTKRALQEEELHSKEEKLRDIKSHQADLEL 177
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKEHEE-----------------------RELTEEEEEIRRLEEQVERLEAEVEELEA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 178 EVKNSLDTIHRLESELKK-QSKIQSQMKVEKA--HLEEEIAELKKsqaqdkaKLLEMQESIKDLSAIRADLANKLAEEER 254
Cdd:COG2433 435 ELEEKDERIERLERELSEaRSEERREIRKDREisRLDREIERLER-------ELEEERERIEELKRKLERLKELWKLEHS 507
|
170 180
....*....|....*....|....*.
gi 1034586337 255 AKKAVLKDLSDLTAQAKSRDEETATI 280
Cdd:COG2433 508 GELVPVKVVEKFTKEAIRRLEEEYGL 533
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
48-258 |
1.45e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.60 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 48 HAEDATKQaeryLSELQQSEALKEEA----EKRREDL--KLKAQE-SIRQWKLKHKKLERALEKQSETVDELTGKNNQIL 120
Cdd:PRK11637 41 HASDNRDQ----LKSIQQDIAAKEKSvrqqQQQRASLlaQLKKQEeAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 121 KEKDE----LKTQLYAALQQIENLRKELndVLTKRALQEEEL---------HSKEEKLRDIKSHQADLELEVKNsldtih 187
Cdd:PRK11637 117 QQQAAqerlLAAQLDAAFRQGEHTGLQL--ILSGEESQRGERilayfgylnQARQETIAELKQTREELAAQKAE------ 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 188 rLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKA 258
Cdd:PRK11637 189 -LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAEREAKA 258
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
41-227 |
1.58e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 41.33 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 41 QISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQwKLKHKKLERALEKQSEtvdELTGKNNQIL 120
Cdd:PRK09510 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ-AEEAAKQAALKQKQAE---EAAAKAAAAA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 121 KEK-DELKTQLYAALQQIENLRKELNDVLTKrALQEEELHSKEEKLRDIKshqADLELEVKNSLDTIHRLESELKKQSKI 199
Cdd:PRK09510 146 KAKaEAEAKRAAAAAKKAAAEAKKKAEAEAA-KKAAAEAKKKAEAEAAAK---AAAEAKKKAEAEAKKKAAAEAKKKAAA 221
|
170 180
....*....|....*....|....*...
gi 1034586337 200 QSQMKVEKAHLEEEIAELKKSQAQDKAK 227
Cdd:PRK09510 222 EAKAAAAKAAAEAKAAAEKAAAAKAAEK 249
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
67-425 |
1.76e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 67 EALKEEAEKRREDLKLKAQESirqwklkHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELND 146
Cdd:pfam05483 200 EELRVQAENARLEMHFKLKED-------HEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 147 VLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKahlEEEIAELKKSQAQDKA 226
Cdd:pfam05483 273 LEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELNKAKAAHSF 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 227 KLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLsdltaQAKSRDEETatiITQLKLERDVHQRELKDLTSSLQSVK 306
Cdd:pfam05483 350 VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMEL-----QKKSSELEE---MTKFKNNKEVELEELKKILAEDEKLL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 307 TKH-------------EQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENEN 373
Cdd:pfam05483 422 DEKkqfekiaeelkgkEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLEN 501
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 1034586337 374 KKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESI 425
Cdd:pfam05483 502 KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV 553
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
56-356 |
1.95e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 56 AERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQ 135
Cdd:COG4372 1 GDRLGEKVGKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 136 QIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIA 215
Cdd:COG4372 81 ELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 216 ELkksqaQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQREL 295
Cdd:COG4372 161 SL-----QEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLAL 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 296 KDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLK 356
Cdd:COG4372 236 SALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELK 296
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
184-390 |
2.31e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 184 DTIHRLESELK----KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKK-- 257
Cdd:PHA02562 174 DKIRELNQQIQtldmKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 258 -AVLKDLSDLTAQAKSRDEE-----------------TATIITQLKLERDVHQReLKDLTSSLQSVKTkHEQNIQELMKH 319
Cdd:PHA02562 254 sAALNKLNTAAAKIKSKIEQfqkvikmyekggvcptcTQQISEGPDRITKIKDK-LKELQHSLEKLDT-AIDELEEIMDE 331
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034586337 320 F---KKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEER 390
Cdd:PHA02562 332 FneqSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
69-341 |
2.35e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.57 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 69 LKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETvdeltgknnqilKEKDELKTQlyaalqqienlRKELNDVL 148
Cdd:PTZ00108 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV------------EEKEIAKEQ-----------RLKSKTKG 1164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 149 TKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKL 228
Cdd:PTZ00108 1165 KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLK 1244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 229 LEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK 308
Cdd:PTZ00108 1245 SKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKK 1324
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1034586337 309 HEQNI---------QELMKHFKKEKSEAENHIRTLKAESLEE 341
Cdd:PTZ00108 1325 KKSEKktarkkkskTRVKQASASQSSRLLRRPRKKKSDSSSE 1366
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
206-423 |
2.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 206 EKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKsrdeETATIITQLK 285
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA----ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 286 LERDVHQRELKDLTSSLQSVKTKHEQNI-------------QELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQL 352
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALllspedfldavrrLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 353 EKLKSQCDRLTEELTQNENENKKLKlkyqclkDQLEEREKHisiEEEHLRRMEEARLQLKDQLLCLETEQE 423
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL-------ARLEKELAE---LAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
92-258 |
2.39e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 92 KLKHKKLERALEKQSETVDELTGKNNQILKEKdelktqLYAALQQIENLRKELNDVLTKR----ALQEEELHSKEEKLRD 167
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAEAIKKEA------LLEAKEEIHKLRNEFEKELRERrnelQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 168 IKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqdKAKLLE-MQESIKDLSAIRADLA 246
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEA--KEILLEkVEEEARHEAAVLIKEI 178
|
170
....*....|..
gi 1034586337 247 NKLAEEERAKKA 258
Cdd:PRK12704 179 EEEAKEEADKKA 190
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
198-586 |
2.74e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 198 KIQSQMKVEKAHLEEEIAE--LKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDE 275
Cdd:pfam02463 146 IIAMMKPERRLEIEEEAAGsrLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 276 ETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLEKL 355
Cdd:pfam02463 226 LLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKL 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 356 KSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESILGVIGKEIDA 435
Cdd:pfam02463 306 ERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 436 ACKTFSKDSVEKLKvfssgpdihydphrwlaesktKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTENKESELQCLF 515
Cdd:pfam02463 386 LSSAAKLKEEELEL---------------------KSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034586337 516 QQIERQEQLLDEIHREKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEEKADRVIAL 586
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLAL 515
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
188-609 |
2.75e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 188 RLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANklAEEERAKKAVLKDLSDLT 267
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE--LREELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 268 AQAKSRDEETATIITQLKLERDvHQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAEsleeknmaki 347
Cdd:COG4717 132 QELEALEAELAELPERLEELEE-RLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE---------- 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 348 hrgqLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREKHISIEEEHLRRMEEA-RLQLKDQLLCLETEQESIL 426
Cdd:COG4717 201 ----LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAaLLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 427 GVIGKEIDAACKTFSKDSVEKLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTEN 506
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 507 KESELQCLFQQIE-RQEQLLDEIH-------REKRDLLEETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQFEE 578
Cdd:COG4717 357 EELEEELQLEELEqEIAALLAEAGvedeeelRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430
....*....|....*....|....*....|.
gi 1034586337 579 KADRVIALETSTQVALDHLESVPEKLSLLED 609
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
54-255 |
3.99e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 54 KQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAA 133
Cdd:PRK05771 40 LSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKEL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 134 LQQIENLR--------------------------KELNDVLTKRALQEEELHSKEEKLRDI------KSHQADLE----- 176
Cdd:PRK05771 120 EQEIERLEpwgnfdldlslllgfkyvsvfvgtvpEDKLEELKLESDVENVEYISTDKGYVYvvvvvlKELSDEVEeelkk 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 177 --------LEVKNSLDTIHRLESELKKQSKiqsqmkvEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDlsaiRADLANK 248
Cdd:PRK05771 200 lgferlelEEEGTPSELIREIKEELEEIEK-------ERESLLEELKELAKKYLEELLALYEYLEIELE----RAEALSK 268
|
....*..
gi 1034586337 249 LAEEERA 255
Cdd:PRK05771 269 FLKTDKT 275
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
32-144 |
4.10e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 32 EAERKHADLQ----ISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSE 107
Cdd:PRK12704 52 EAIKKEALLEakeeIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1034586337 108 TVDELTGKNNQILKE-----KDELKTQLyaalqqIENLRKEL 144
Cdd:PRK12704 132 ELEELIEEQLQELERisgltAEEAKEIL------LEKVEEEA 167
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
60-252 |
4.54e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 60 LSELQQSEALKEEAEKRREDLKLKAQESIRQWKlkhkKLERALEKQSETVDELTgknnqilKEKDELKTQLYAALQQIEN 139
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAELAELEDELA----ALEARLEAAKTELEDLE-------KEIKRLELEIEEVEARIKK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 140 LRKELNDVLTKRalqeeELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKqskIQSQMKVEKAHLEEEIAELKk 219
Cdd:COG1579 78 YEEQLGNVRNNK-----EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELD- 148
|
170 180 190
....*....|....*....|....*....|...
gi 1034586337 220 sqaqdkAKLLEMQESIKDLSAIRADLANKLAEE 252
Cdd:COG1579 149 ------EELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
16-425 |
4.62e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 4.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 16 QMLDRLKEIQNHFDtcEAERKHADLQ-----ISELTRHAEDATKQaeryLSELQQSEALKEEAEKRREDLKLKAQESIRQ 90
Cdd:PRK01156 312 QILSNIDAEINKYH--AIIKKLSVLQkdyndYIKKKSRYDDLNNQ----ILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 91 WKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEE-------LHSKEE 163
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgTTLGEE 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 164 KLRDIKSHQAdlelEVKNSLDT-IHRLESELKKQSKIQSQMKVEKAHLEEEiaELKKSQAQDKaKLLEMQESIKDLSAIR 242
Cdd:PRK01156 466 KSNHIINHYN----EKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESE--EINKSINEYN-KIESARADLEDIKIKI 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 243 ADLANKLAEEERAKKAVLK-DLSDLTAQAKSRDEETATI----ITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELM 317
Cdd:PRK01156 539 NELKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNALAVIslidIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYID 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 318 KHFKKEKSEAeNHIRTLKAESLEEKNMAKIHRGQLEKLKSQC----------DRLTEELTQNENENKKLKLKYQCLKDQL 387
Cdd:PRK01156 619 KSIREIENEA-NNLNNKYNEIQENKILIEKLRGKIDNYKKQIaeidsiipdlKEITSRINDIEDNLKKSRKALDDAKANR 697
|
410 420 430
....*....|....*....|....*....|....*...
gi 1034586337 388 EEREKHISIEEEHLRRMEEARLQLKDQLLCLETEQESI 425
Cdd:PRK01156 698 ARLESTIEILRTRINELSDRINDINETLESMKKIKKAI 735
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
3-575 |
5.23e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 3 LTRELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADlQISELTRHAEDATKQAERYLSELQQSEALKEEAEKRREDLKL 82
Cdd:TIGR00618 217 YHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE-EQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 83 KA-QESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQ--LYAALQQIENLRKELNDVLTKRALQEEELH 159
Cdd:TIGR00618 296 AAhIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQrrLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 160 SKEEKLR---DIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEE--------------IAELKKSQA 222
Cdd:TIGR00618 376 TLTQHIHtlqQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQqelqqryaelcaaaITCTAQCEK 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 223 QDKAKLLEMQESIKDLSAIRADLANKLAEEERAKKAVLKDLSDLTAQAKSRDEETA--TIITQLKLERDVHQR---ELKD 297
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIhpNPARQDIDNPGPLTRrmqRGEQ 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 298 LTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIhrgqLEKLKSQCDRLTEELTQNENENKKLK 377
Cdd:TIGR00618 536 TYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKED----IPNLQNITVRLQDLTEKLSEAEDMLA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 378 LKYQCLKDQLEEREKHISIEEEhlRRMEEARLQLKdqLLCLETEQESILgviGKEIDAACKTFSKDSVEKLKVFSSGPDI 457
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLQDVRLH--LQQCSQELALK--LTALHALQLTLT---QERVREHALSIRVLPKELLASRQLALQK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 458 HYDPHRWLAESKTKLQWLCEELKERENREKNLRHQlmlcRQQLRNLTENKESELQclfQQIERQEQLLDEIHREKRDLLE 537
Cdd:TIGR00618 685 MQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDRE----FNEIENASSSLGSDLA---AREDALNQSLKELMHQARTVLK 757
|
570 580 590
....*....|....*....|....*....|....*...
gi 1034586337 538 ETQRKDEEMGSLQPKLLFKLPPWEDASQTAVRNQSEAQ 575
Cdd:TIGR00618 758 ARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLRE 795
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
94-410 |
5.26e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 94 KHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQA 173
Cdd:pfam17380 238 RRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 174 DLELEVKNsldtihrlESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRaDLANKLAEEE 253
Cdd:pfam17380 318 LEEAEKAR--------QAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMR-ELERLQMERQ 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 254 RAKKAVLKDLsdltaqaksrdeETATIITQLKLERdvhQRELKDLTSSLQSVKTKHEQNIQELMKHFKKEKSEAENHIRT 333
Cdd:pfam17380 389 QKNERVRQEL------------EAARKVKILEEER---QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 334 LKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKL---------------KLKYQCLKDQLEEREKHISIEE 398
Cdd:pfam17380 454 EEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKIlekeleerkqamieeERKRKLLEKEMEERQKAIYEEE 533
|
330
....*....|..
gi 1034586337 399 EHLRRMEEARLQ 410
Cdd:pfam17380 534 RRREAEEERRKQ 545
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
82-316 |
5.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 82 LKAQESIRQWKLKHKKLERALEKQSETVDELTG-------KNNQILKEKDELKTQLyAALQQIEnlrkelnDVLTKRALQ 154
Cdd:PRK04863 344 LRQQEKIERYQADLEELEERLEEQNEVVEEADEqqeeneaRAEAAEEEVDELKSQL-ADYQQAL-------DVQQTRAIQ 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 155 eeeLHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQS----KIQSQMKVEKAHLE--EEIAEL--------KKS 220
Cdd:PRK04863 416 ---YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSqfEQAYQLvrkiagevSRS 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 221 QAQDKAK-LLEMQESIKDLSAIRADLANKLAEEER--AKKAVLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKD 297
Cdd:PRK04863 493 EAWDVAReLLRRLREQRHLAEQLQQLRMRLSELEQrlRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSE 572
|
250
....*....|....*....
gi 1034586337 298 LTSSLQSVKTKHEQNIQEL 316
Cdd:PRK04863 573 SVSEARERRMALRQQLEQL 591
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
5-142 |
5.82e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 5 RELENGEKQQLQMLDRLKEIQNHFDTCEAERKHADLQISELTR-HAEDATKQAERYLSELQQSEALKEEAEKRRE----- 78
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAqIRGNGGDRLEQLEREIERLERELEERERRRArleal 367
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1034586337 79 --DLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDELKTQLYAALQQIENLRK 142
Cdd:COG4913 368 laALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
157-318 |
6.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 157 ELHSKEEKLRDIKSHQADLELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQeSIK 236
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-NNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 237 DLSAIradlankLAEEERAKKAvLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQEL 316
Cdd:COG1579 90 EYEAL-------QKEIESLKRR-ISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
..
gi 1034586337 317 MK 318
Cdd:COG1579 162 EA 163
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
75-313 |
7.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 75 KRREDLKLKAQESIRQWklkhkkLERALEKQSETVDELTGKNNQILKEKD--ELKTQLYAALQQIENLRKELNDVLTKRA 152
Cdd:COG3206 163 EQNLELRREEARKALEF------LEEQLPELRKELEEAEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 153 LQEEELHSKEEKLRDIKSHQADL--ELEVKNSLDTIHRLESELKKQSKiqsqmKVEKAH-----LEEEIAELKKSQAQDK 225
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELlqSPVIQQLRAQLAELEAELAELSA-----RYTPNHpdviaLRAQIAALRAQLQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 226 AKLLEMQESikDLSAIRADLANKLAEEERAKKAVlKDLSDLTAQaksrdeetatiITQLKLERDVHQRELKDLTSSLQSV 305
Cdd:COG3206 312 QRILASLEA--ELEALQAREASLQAQLAQLEARL-AELPELEAE-----------LRRLEREVEVARELYESLLQRLEEA 377
|
....*...
gi 1034586337 306 KTKHEQNI 313
Cdd:COG3206 378 RLAEALTV 385
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
117-265 |
7.12e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 117 NQILKEKDELKTQLYAALQQIENLRKELNDVLTKRALQEEELHSKEEKLRDIKSHQADLELEVKNSLDT--IHRLESELK 194
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeYEALQKEIE 99
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034586337 195 KQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKD----LSAIRADLANKLAEEERAKKAVLKDLSD 265
Cdd:COG1579 100 SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEkkaeLDEELAELEAELEELEAEREELAAKIPP 174
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
54-413 |
7.57e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.88 E-value: 7.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 54 KQAERYLSELQQSEALKEEAEKRREDLK-LKAQESIRQW---KLKHKKLEraLEKQSETVDELTGKNNQILKEKDELKTQ 129
Cdd:PRK01156 149 AQRKKILDEILEINSLERNYDKLKDVIDmLRAEISNIDYleeKLKSSNLE--LENIKKQIADDEKSHSITLKEIERLSIE 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 130 LYAALQQIENLRKELNDVLTkralQEEELHSKEEKLRDIKSHQADLELEV---------------------KNSLDTIHR 188
Cdd:PRK01156 227 YNNAMDDYNNLKSALNELSS----LEDMKNRYESEIKTAESDLSMELEKNnyykeleerhmkiindpvyknRNYINDYFK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 189 LESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAqDKAKLLEMQESIKDLSAIRADLA----------------NKLAEE 252
Cdd:PRK01156 303 YKNDIENKKQILSNIDAEINKYHAIIKKLSVLQK-DYNDYIKKKSRYDDLNNQILELEgyemdynsylksieslKKKIEE 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 253 ERAKkavLKDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTKHEQNIQELMKHFkkEKSEAENHIR 332
Cdd:PRK01156 382 YSKN---IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNM--EMLNGQSVCP 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 333 TLKAESLEEKNmakihRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEERE-KHISIEEEHLRRMEEARLQL 411
Cdd:PRK01156 457 VCGTTLGEEKS-----NHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADL 531
|
..
gi 1034586337 412 KD 413
Cdd:PRK01156 532 ED 533
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
47-392 |
7.70e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 7.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 47 RHAEDATKQAERYLSELQQSEALKEEAEKRREDLKLKAQESIRQWKLKHKKLERALEKQSETVDELTGKNNQILKEKDEL 126
Cdd:TIGR00606 401 ERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQEL 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 127 KTQLY------------AALQQIENLRKELNDVLTKRALQEEELH--------------------SKEEKLRDIKSHQAD 174
Cdd:TIGR00606 481 RKAERelskaeknslteTLKKEVKSLQNEKADLDRKLRKLDQEMEqlnhhtttrtqmemltkdkmDKDEQIRKIKSRHSD 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 175 LELEVKNSLDTIHRLESELKKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEE-- 252
Cdd:TIGR00606 561 ELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEEsd 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034586337 253 -ERAKKAVLKDLSDLtAQAKSRDEETATIITQLKLERD----VHQRELKDltsslqsvktkhEQNIQELMKHFKKEKSEA 327
Cdd:TIGR00606 641 lERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDENQsccpVCQRVFQT------------EAELQEFISDLQSKLRLA 707
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034586337 328 ENHIRTLKAESLEEKNMAKIHRGQLEKLKSQCDRLTEELTQNENENKKLKLKYQCLKDQLEEREK 392
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772
|
|
| |
