|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1578-1688 |
6.58e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.71 E-value: 6.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1578 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1657
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1034673482 1658 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1688
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1467-1574 |
6.23e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
:
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.23e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1467 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1546
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1034673482 1547 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1574
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.80e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034673482 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.13e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1034673482 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1085-1350 |
2.64e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.38 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1085 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgfpgtpgppgpkgisgppgnpglpgepgpvgggghpgQ 1164
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPG------------------------------------------P 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1165 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGppglpglsGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1244
Cdd:NF038329 155 QGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA--------GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1245 PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1324
Cdd:NF038329 227 AGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQ 306
|
250 260
....*....|....*....|....*.
gi 1034673482 1325 KGDPGLPGVPGFPGMKGPSGVPGSAG 1350
Cdd:NF038329 307 NGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1262-1443 |
1.24e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1262 QGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1341
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1342 PSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSII-IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPG 1420
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDgDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVG 284
|
170 180
....*....|....*....|...
gi 1034673482 1421 FDGAGGRKGDPGLPGQPGTRGLD 1443
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQN 307
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.79e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034673482 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1578-1688 |
6.58e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.71 E-value: 6.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1578 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1657
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1034673482 1658 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1688
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1467-1574 |
6.23e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.23e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1467 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1546
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1034673482 1547 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1574
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1576-1689 |
3.39e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 207.63 E-value: 3.39e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1576 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1654
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 1034673482 1655 ATVDVSDMFSKPQSETLKAGDLRTRISRCQVCMKR 1689
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1466-1575 |
2.19e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 187.98 E-value: 2.19e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1466 GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1545
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1034673482 1546 TPEP-----MPMSMQPLKGQsIQPFISRCAVCEAP 1575
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.80e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034673482 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.13e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1034673482 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
848-1117 |
9.66e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 848 GEKGDPGPPGldVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEmgmmgppgpPGPLGIPGRSGVPGLK 927
Cdd:NF038329 117 GEKGEPGPAG--PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 928 GDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGyQGLPGDPGQPGLSGQPGLP 1007
Cdd:NF038329 186 GPAGEKGPQGPRGETGPAGEQGPA--------------GPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1008 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSgvpgqpgspGLPGQKGDKGDPgissiGLPGLPGPK 1087
Cdd:NF038329 251 GPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD---------GLPGKDGKDGQN-----GKDGLPGKD 316
|
250 260 270
....*....|....*....|....*....|
gi 1034673482 1088 GEPGLPGYPGNPGIKGSVGDPGLPGlPGTP 1117
Cdd:NF038329 317 GKDGQPGKDGLPGKDGKDGQPGKPA-PKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1085-1350 |
2.64e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.38 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1085 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgfpgtpgppgpkgisgppgnpglpgepgpvgggghpgQ 1164
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPG------------------------------------------P 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1165 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGppglpglsGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1244
Cdd:NF038329 155 QGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA--------GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1245 PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1324
Cdd:NF038329 227 AGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQ 306
|
250 260
....*....|....*....|....*.
gi 1034673482 1325 KGDPGLPGVPGFPGMKGPSGVPGSAG 1350
Cdd:NF038329 307 NGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1262-1443 |
1.24e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1262 QGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1341
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1342 PSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSII-IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPG 1420
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDgDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVG 284
|
170 180
....*....|....*....|...
gi 1034673482 1421 FDGAGGRKGDPGLPGQPGTRGLD 1443
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQN 307
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1437 |
3.64e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.53 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1170 EKGKPGQDGIPGPAGQKGEpgqpgfgnpgppglpglsgqKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGP--------------------RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1250 PALEGPKGNPGPQGPPGRPglpgpegppglpgnggiKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGlNGMKGDPG 1329
Cdd:NF038329 178 KDGEAGAKGPAGEKGPQGP-----------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1330 LPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPsgqsiiiKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1409
Cdd:NF038329 240 DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE-------RGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGL 312
|
250 260
....*....|....*....|....*...
gi 1034673482 1410 PGDPGRNGLPGFDGAGGRKGDPGLPGQP 1437
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
532-592 |
1.14e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.41 E-value: 1.14e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034673482 532 GLPGIPGAPGAPGFPGSKGEPGdiltFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 592
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPG----PPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1293-1349 |
3.38e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.87 E-value: 3.38e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034673482 1293 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1349
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.79e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034673482 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
773-986 |
8.25e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 43.74 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 773 KGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGD 852
Cdd:NF038329 161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 853 PGPPGLDVP-GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGmmgppgppgplgipgRSGVPGLKGDDG 931
Cdd:NF038329 241 PGPTGEDGPqGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---------------KDGLPGKDGKDG 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034673482 932 LQGQPGLPGPTGEKGskgepglpgppgpmdpnLLGSKGEKGEPGLPGIPGVSGPK 986
Cdd:NF038329 306 QNGKDGLPGKDGKDG-----------------QPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
294-595 |
1.91e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.58 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 294 GEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGIT-IGEKGNIGLPGLP 372
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPT 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 373 GEKGERGfpgiqgppglpgppgaavmgppgppgfpgergqkgdegppgisipgppgldgqpgapglpgppgpagphipps 452
Cdd:NF038329 245 GEDGPQG------------------------------------------------------------------------- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 453 deicepgppgppgspgDKGLQGEQGVKGDKGDtcfncigtgisgppgqpglpglpgppgslgfPGQKGEKGQAGATGPKG 532
Cdd:NF038329 252 ----------------PDGPAGKDGPRGDRGE-------------------------------AGPDGPDGKDGERGPVG 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034673482 533 LPGIPGAPGAPGFPGSKGEPGDiltfPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPK 595
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQ----NGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1578-1688 |
6.58e-69 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 226.71 E-value: 6.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1578 VIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTSAGaEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATV 1657
Cdd:pfam01413 2 LIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNG-EGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYASNDYSYWLSTV 80
|
90 100 110
....*....|....*....|....*....|..
gi 1034673482 1658 DvsDMFSKPQSETLKAGD-LRTRISRCQVCMK 1688
Cdd:pfam01413 81 E--EQFRKPMSQTPKAGNeLRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1467-1574 |
6.23e-63 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 209.37 E-value: 6.23e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1467 FLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASrNDYSYWLST 1546
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 1034673482 1547 PE---PMPMSMQPLKGQSIQPFISRCAVCEA 1574
Cdd:pfam01413 80 VEeqfRKPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1576-1689 |
3.39e-62 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 207.63 E-value: 3.39e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1576 AVVIAVHSQTIQIPHCPQGWDSLWIGYSFMMHTsAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYA-NSYSFWL 1654
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASrNDYSFWL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 1034673482 1655 ATVDVSDMFSKPQSETLKAGDLRTRISRCQVCMKR 1689
Cdd:smart00111 80 STIEPSDQFTAPRPMTPKAGDLRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1466-1575 |
2.19e-55 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 187.98 E-value: 2.19e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1466 GFLITRHSQTTDAPQCPQGTLQVYEGFSLLYVQGNKRAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLS 1545
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 1034673482 1546 TPEP-----MPMSMQPLKGQsIQPFISRCAVCEAP 1575
Cdd:smart00111 81 TIEPsdqftAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
469-703 |
8.80e-14 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 75.71 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 469 DKGLQGEQGVKGDKGDTCfnciGTGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAPGAPGFPGS 548
Cdd:NF038329 151 PPGPQGERGEKGPAGPQG----EAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 549 KGEPGDILTfpGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERgppgnpglpglpgnigpmgpp 628
Cdd:NF038329 227 AGPAGDGQQ--GPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPV--------------------- 283
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1034673482 629 gfgppgpvgekGIQGVAGNPGQPGIPGPKGDPGQTitqpGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSK 703
Cdd:NF038329 284 -----------GPAGKDGQNGKDGLPGKDGKDGQN----GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
969-1231 |
1.13e-12 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 969 GEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGP 1048
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1049 PGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgf 1128
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAG------- 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1129 pgtpgppgpkgisgppgnpglpgepgPVGGGGHPGQPGPPGEKGKPGQ---DGIPGPAGQKGEpgqpgfgnpgpPGLPGL 1205
Cdd:NF038329 270 --------------------------PDGPDGKDGERGPVGPAGKDGQngkDGLPGKDGKDGQ-----------NGKDGL 312
|
250 260
....*....|....*....|....*.
gi 1034673482 1206 SGQKGDGGLPGIPGNPGLPGPKGEPG 1231
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
848-1117 |
9.66e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 9.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 848 GEKGDPGPPGldVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEmgmmgppgpPGPLGIPGRSGVPGLK 927
Cdd:NF038329 117 GEKGEPGPAG--PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------AGPQGPAGKDGEAGAK 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 928 GDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGyQGLPGDPGQPGLSGQPGLP 1007
Cdd:NF038329 186 GPAGEKGPQGPRGETGPAGEQGPA--------------GPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQ 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1008 GPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSgvpgqpgspGLPGQKGDKGDPgissiGLPGLPGPK 1087
Cdd:NF038329 251 GPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD---------GLPGKDGKDGQN-----GKDGLPGKD 316
|
250 260 270
....*....|....*....|....*....|
gi 1034673482 1088 GEPGLPGYPGNPGIKGSVGDPGLPGlPGTP 1117
Cdd:NF038329 317 GKDGQPGKDGLPGKDGKDGQPGKPA-PKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1085-1350 |
2.64e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.38 E-value: 2.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1085 GPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGqpglpgfpgtpgppgpkgisgppgnpglpgepgpvgggghpgQ 1164
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPG------------------------------------------P 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1165 PGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGppglpglsGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGP 1244
Cdd:NF038329 155 QGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPA--------GEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGP 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1245 PGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1324
Cdd:NF038329 227 AGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQ 306
|
250 260
....*....|....*....|....*.
gi 1034673482 1325 KGDPGLPGVPGFPGMKGPSGVPGSAG 1350
Cdd:NF038329 307 NGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1262-1443 |
1.24e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1262 QGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG 1341
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1342 PSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSII-IKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPG 1420
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDgDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVG 284
|
170 180
....*....|....*....|...
gi 1034673482 1421 FDGAGGRKGDPGLPGQPGTRGLD 1443
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQN 307
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1170-1437 |
3.64e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.53 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1170 EKGKPGQDGIPGPAGQKGEpgqpgfgnpgppglpglsgqKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1249
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGP--------------------RGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1250 PALEGPKGNPGPQGPPGRPglpgpegppglpgnggiKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGlNGMKGDPG 1329
Cdd:NF038329 178 KDGEAGAKGPAGEKGPQGP-----------------RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 1330 LPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPsgqsiiiKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGP 1409
Cdd:NF038329 240 DPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGE-------RGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGL 312
|
250 260
....*....|....*....|....*...
gi 1034673482 1410 PGDPGRNGLPGFDGAGGRKGDPGLPGQP 1437
Cdd:NF038329 313 PGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
532-592 |
1.14e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.41 E-value: 1.14e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1034673482 532 GLPGIPGAPGAPGFPGSKGEPGdiltFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP 592
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPG----PPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1293-1349 |
3.38e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.87 E-value: 3.38e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1034673482 1293 GQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSA 1349
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
767-995 |
3.79e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.36 E-value: 3.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 767 PGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGlhGI 846
Cdd:NF038329 128 AGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPA--GE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 847 PGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGL 926
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1034673482 927 KGDDGLQGQPGLPGPTGEKGSKGEPglpgppgpmdpnllGSKGEKGEPGLPGIPGVSGPKGYQGLPGDP 995
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKD--------------GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
646-705 |
5.91e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 5.91e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 646 GNPGQPGIPGPKGDPGQtitqPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 705
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGP----PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
535-598 |
6.72e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.72e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1034673482 535 GIPGAPGAPGFPGSKGEPGDIltfpgmkGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEP 598
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPP-------GPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
773-986 |
8.25e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 43.74 E-value: 8.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 773 KGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGD 852
Cdd:NF038329 161 KGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 853 PGPPGLDVP-GPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGmmgppgppgplgipgRSGVPGLKGDDG 931
Cdd:NF038329 241 PGPTGEDGPqGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---------------KDGLPGKDGKDG 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1034673482 932 LQGQPGLPGPTGEKGskgepglpgppgpmdpnLLGSKGEKGEPGLPGIPGVSGPK 986
Cdd:NF038329 306 QNGKDGLPGKDGKDG-----------------QPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
294-595 |
1.91e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 42.58 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 294 GEQGEPGKRGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGIT-IGEKGNIGLPGLP 372
Cdd:NF038329 165 GPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgDGQQGPDGDPGPT 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 373 GEKGERGfpgiqgppglpgppgaavmgppgppgfpgergqkgdegppgisipgppgldgqpgapglpgppgpagphipps 452
Cdd:NF038329 245 GEDGPQG------------------------------------------------------------------------- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034673482 453 deicepgppgppgspgDKGLQGEQGVKGDKGDtcfncigtgisgppgqpglpglpgppgslgfPGQKGEKGQAGATGPKG 532
Cdd:NF038329 252 ----------------PDGPAGKDGPRGDRGE-------------------------------AGPDGPDGKDGERGPVG 284
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1034673482 533 LPGIPGAPGAPGFPGSKGEPGDiltfPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPK 595
Cdd:NF038329 285 PAGKDGQNGKDGLPGKDGKDGQ----NGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1305-1351 |
2.74e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 2.74e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1034673482 1305 GDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGP 1351
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGP 47
|
|
| |
