|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
193-831 |
4.97e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.18 E-value: 4.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 193 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDIN 272
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 273 TLTRQKELLLQKLSTFEETNRTLRDLLRE------QHCKELCLKVPECAR-QHRPGRERQEDCQDSERLMEQQGALLKR- 344
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQlelqiaSLNNEIERLEARLERlEDRRERLQQEIEELLKKLEEAELKELQAe 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 345 -------LAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ-AQLRCKEAENSRLCM--- 413
Cdd:TIGR02168 442 leeleeeLEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgFSEGVKALLKNQSGLsgi 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 414 --QIKNLERSGNQHKAEVEA---------IMEQLKELKQKGDRDKETLK--------KAIRAQKERAEKSEEYAEQLHVQ 474
Cdd:TIGR02168 522 lgVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGNDREILKNIEGFL 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 475 LADKDL--YVAEALSTLESWRSRYnqVVKDKGDLELEIIVLNDR----VT---DLVNQQQSLEEKMREDRDSLVERlhrq 545
Cdd:TIGR02168 602 GVAKDLvkFDPKLRKALSYLLGGV--LVVDDLDNALELAKKLRPgyriVTldgDLVRPGGVITGGSAKTNSSILER---- 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 546 taeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDnyksqvmktrlEADEVAAQLERCDKENKMLKDE 625
Cdd:TIGR02168 676 -------RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE-----------QLRKELEELSRQISALRKDLAR 737
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 626 MNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQK 705
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 706 ENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAiEDARRQVEQTKEQALSKE 785
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALALLRSEL 896
|
650 660 670 680
....*....|....*....|....*....|....*....|....*....
gi 1046878552 786 RAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQS---RLQDLKDRL 831
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGlevRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-833 |
2.44e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 2.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 244 AAAAKQVMALKDTIGKLktEKQMTCTDINTLTRQKELLLQKLstfEETNRTLRDLLREQHCKElclkvpecARQHRPGRE 323
Cdd:COG1196 209 AEKAERYRELKEELKEL--EAELLLLKLRELEAELEELEAEL---EELEAELEELEAELAELE--------AELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 324 RQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRC 403
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 404 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKdlyvA 483
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL----A 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 484 EALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASF 563
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 564 AP-MEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRL-EADEVAAQLERCDKENKMLKDE---MNKEIEAARRQFQ 638
Cdd:COG1196 512 AAlLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAKAGRATflpLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 639 SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELE 718
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 719 RKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEktrecgslARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQ 798
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEE--------EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590
....*....|....*....|....*....|....*
gi 1046878552 799 LSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQ 833
Cdd:COG1196 744 EEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-855 |
3.58e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 332 ERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRL 411
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 412 CMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvQLADKdlyVAEALSTLES 491
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE-TLRSK---VAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 492 WRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLE-EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKL 570
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 571 NQAHLEVQQLKASVKNYEGMIDNYKS------QVMKTRLEAD----------EVAAQLERC---------------DKEN 619
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSGLSgilgvlseliSVDEGYEAAieaalggrlqavvveNLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 620 KMLKDEMNKEIEAARRQF------------QSQLADLQQLPDILKITeAKLAECQDQLQGYERKNIDLTAIISDLRSRIE 687
Cdd:TIGR02168 558 AKKAIAFLKQNELGRVTFlpldsikgteiqGNDREILKNIEGFLGVA-KDLVKFDPKLRKALSYLLGGVLVVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 688 HQ-------------GDKL----------ELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQ 744
Cdd:TIGR02168 637 LAkklrpgyrivtldGDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 745 AQLRLEEKTRECGSLARQLESA------IEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLrrtrddvdr 818
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLeaeveqLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL--------- 787
|
570 580 590
....*....|....*....|....*....|....*..
gi 1046878552 819 ryQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV 855
Cdd:TIGR02168 788 --EAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
513-836 |
1.23e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 1.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 513 LNDRVTDLVNQQQSLEEKMR--EDRDSLVERLHRQTAEYSAFKLEneRLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 590
Cdd:COG1196 191 LEDILGELERQLEPLERQAEkaERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 591 IDNYKSQVMKTRLEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 670
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 671 KNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQnvefLQVIAKREEAIHQAQLRLE 750
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 751 EKTRECGSLARQLESAIEDARRQVEQTKE---QALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDL 827
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEeeaELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
....*....
gi 1046878552 828 KDRLEQSES 836
Cdd:COG1196 501 ADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-769 |
1.62e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 1.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 406 AENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEA 485
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 486 LSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMredrDSLVERLHRQTAEYSAFKLENERLKASFAP 565
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL----DELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 566 MEDKLNQAHLEVQQLKASVKNYEGMIDNYksqvmktRLEADEVAAQLERCDKEnkmlKDEMNKEIEAARRQFQSQLADLQ 645
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEEL-------EELIEELESELEALLNE----RASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 646 QLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRI-EHQGDKLELAREKHQASQKENKQLSQKVDELERKLEAT 724
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1046878552 725 STQNVEFLQVIAKREEaihqaqlRLEEKTRECGSLAR---QLESAIED 769
Cdd:TIGR02168 985 GPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEakeTLEEAIEE 1025
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
275-852 |
3.98e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.91 E-value: 3.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 275 TRQKELLLQKLSTFEETNRTLRDLLREQHCKE-LCLKVPECARQHRPGRERQEDCQDSERLMEQQgallkrLAEADSEKA 353
Cdd:TIGR00606 363 IRARDSLIQSLATRLELDGFERGPFSERQIKNfHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ------ADEIRDEKK 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 354 RLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLR-CKEAENSRLCMQIKNLERSGNQHKAEVEAI 432
Cdd:TIGR00606 437 GLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEReLSKAEKNSLTETLKKEVKSLQNEKADLDRK 516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 433 MEQLKELKQKGDRDKETLKKAIRAQKERAEKSEE-------YAEQLHVQLADKDlYVAEALSTLESWRSRYNQVVKDKGD 505
Cdd:TIGR00606 517 LRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrHSDELTSLLGYFP-NKKQLEDWLHSKSKEINQTRDRLAK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 506 LELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKAS--FAPMEDKLNQAHLEVQQLKAS 583
Cdd:TIGR00606 596 LNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSkqRAMLAGATAVYSQFITQLTDE 675
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 584 VKNYEGMIDnyksQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQD 663
Cdd:TIGR00606 676 NQSCCPVCQ----RVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 664 QLQGYERKNIDLTAIISDLRSRIEHQGDKLELAR---------EKHQASQKENK--------------------QLSQKV 714
Cdd:TIGR00606 752 KLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKvcltdvtimERFQMELKDVErkiaqqaaklqgsdldrtvqQVNQEK 831
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 715 DELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKE-QALSKE-RAAQSKI 792
Cdd:TIGR00606 832 QEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEvQSLIREiKDAKEQD 911
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 793 LDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSY 852
Cdd:TIGR00606 912 SPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDY 971
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
601-839 |
4.02e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 601 TRLEA--DEVAAQLERCDKE------NKMLKDEMN-KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 671
Cdd:COG1196 189 ERLEDilGELERQLEPLERQaekaerYRELKEELKeLEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 672 NIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEE 751
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 752 KTRECGSLARQLESAiEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRL 831
Cdd:COG1196 349 AEEELEEAEAELAEA-EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
....*...
gi 1046878552 832 EQSESTNR 839
Cdd:COG1196 428 EALAELEE 435
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
334-833 |
4.72e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 63.70 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 334 LMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-----SELSKSMESMRGHLQAQLRCKEAEN 408
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAvakdrSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 409 SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyvaeALST 488
Cdd:pfam12128 347 EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAED-------DLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 489 LES-WRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKM--REDRDSLVER----LHRQTAEYSAFKLENERLKA 561
Cdd:pfam12128 420 LESeLREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLlqLENFDERIERareeQEAANAEVERLQSELRQARK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 562 SFAPMEDKLNQAHLEVQQLKASVKNYEGMID----------NYKSQVMKTRLEADEVAAQLERCDkenkmLKDEMNKEIE 631
Cdd:pfam12128 500 RRDQASEALRQASRRLEERQSALDELELQLFpqagtllhflRKEAPDWEQSIGKVISPELLHRTD-----LDPEVWDGSV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 632 AARRQFQSQLADLQQL--PDILKITEAklaecqdqlqgyerknidltaiisdLRSRIEHQGDKLELAREKHQASQKENKQ 709
Cdd:pfam12128 575 GGELNLYGVKLDLKRIdvPEWAASEEE-------------------------LRERLDKAEEALQSAREKQAAAEEQLVQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 710 LSQKVDELERKLEATSTqnveflqviakreeAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQAlskerAAQ 789
Cdd:pfam12128 630 ANGELEKASREETFART--------------ALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL-----EAQ 690
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 1046878552 790 SKILDLETQLSRTKTElGQLRRTRDDVDRRYQSRLQDLKDRLEQ 833
Cdd:pfam12128 691 LKQLDKKHQAWLEEQK-EQKREARTEKQAYWQVVEGALDAQLAL 733
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
198-727 |
6.38e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 6.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 198 EHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEmdgaaaaKQVMALKDTIGKLKTEK---QMTCTDINTL 274
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLK-------KQKEELENELNLLEKEKlniQKNIDKIKNK 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 275 TRQKELLLQKLSTFEETNRTLRDLLRE------QHCKELCLKVPECARQHRPGRERQEDCQDserLMEQQGALLKRLAEA 348
Cdd:TIGR04523 196 LLKLELLLSNLKKKIQKNKSLESQISElkkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQ---LKDEQNKIKKQLSEK 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 349 DSEKARLLLLLQDKDKEVEELLQEIQCEKAQA-----KTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGN 423
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLNQLKSEISDLNNQKeqdwnKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELT 352
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 424 QHKAEVEAIMEQLKELKQKgdrdKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDK 503
Cdd:TIGR04523 353 NSESENSEKQRELEEKQNE----IEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 504 GDLELEIIVLNDRVTDLVNQQQSLE---EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQL 580
Cdd:TIGR04523 429 ERLKETIIKNNSEIKDLTNQDSVKEliiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 581 KASVKNYEGMIDNYKSQVMKTRLEADEVAAQLErcDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAE 660
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESEKKEKESKIS--DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEE 586
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046878552 661 CQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQ 727
Cdd:TIGR04523 587 KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKET 653
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-586 |
1.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 270 DINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRPGRERQEdcqdSERLMEQQGALLKRLAEAD 349
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE----VEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 350 SEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEV 429
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 430 EAIMEQLKELKQkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELE 509
Cdd:TIGR02168 841 EDLEEQIEELSE----DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046878552 510 IIVLNDRVTDLVNQQQSLEEKmredRDSLVERLhrqTAEYSafkLENERLKASFAPMEDKLNQAHLEVQQLKASVKN 586
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVR----IDNLQERL---SEEYS---LTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
332-858 |
1.98e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 332 ERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASE-----LSKSMESMRGHlQAQLRCKEA 406
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrVKEKIGELEAE-IASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 407 ENSRlcmQIKNLERSGNQHKAEVEAIMEQLKELkqkgDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEAL 486
Cdd:TIGR02169 312 EKER---ELEDAEERLAKLEAEIDKLLAEIEEL----EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 487 STLESWRSRYNQVVKDKGDLELEIIVLND-------RVTDLVNQQQSLEEKMRE---DRDSLVERLHRQT-------AEY 549
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEelqrlseELADLNAAIAGIEAKINEleeEKEDKALEIKKQEwkleqlaADL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 550 SAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTR--------------------------- 602
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKasiqgvhgtvaqlgsvgeryataieva 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 603 ---------LEADEVAAQLERCDKE-----------NKMLKDEMNKE--------------------------------- 629
Cdd:TIGR02169 545 agnrlnnvvVEDDAVAKEAIELLKRrkagratflplNKMRDERRDLSilsedgvigfavdlvefdpkyepafkyvfgdtl 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 630 ----IEAARRQF---------------------------------QSQLADLQQLPDILKITEAKLAECQDQLQGYERKN 672
Cdd:TIGR02169 625 vvedIEAARRLMgkyrmvtlegelfeksgamtggsraprggilfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRL 704
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 673 IDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEE- 751
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDl 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 752 KTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLEtQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRL 831
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE-YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
650 660
....*....|....*....|....*..
gi 1046878552 832 EQSESTNRSMQNYVQFLKSSYANVFGD 858
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKE 890
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
416-833 |
6.80e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.67 E-value: 6.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 416 KNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEqlhvqladkdlyVAEALSTLESwrsr 495
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELET------------LEAEIEDLRE---- 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 496 ynqvvkDKGDLELEIIVLNDRVTDlvnQQQSLEEkMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHL 575
Cdd:PRK02224 266 ------TIAETEREREELAEEVRD---LRERLEE-LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 576 EVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERC-----DKENKMlkDEMNKEIEAARRQFQSQLADLQQLPDI 650
Cdd:PRK02224 336 AAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAreaveDRREEI--EELEEEIEELRERFGDAPVDLGNAEDF 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 651 LkiteAKLAECQDQLQGYERkniDLTAIISDLRSRIEHQGDKLE----------LAREKHQASQKENKQlsqKVDELERK 720
Cdd:PRK02224 414 L----EELREERDELREREA---ELEATLRTARERVEEAEALLEagkcpecgqpVEGSPHVETIEEDRE---RVEELEAE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 721 LEATSTQNVEFLQVIAKREEAIHQAQL--RLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQ 798
Cdd:PRK02224 484 LEDLEEEVEEVEERLERAEDLVEAEDRieRLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430
....*....|....*....|....*....|....*
gi 1046878552 799 LSRTKTELGQLrrtrddvdRRYQSRLQDLKDRLEQ 833
Cdd:PRK02224 564 EEEAEEAREEV--------AELNSKLAELKERIES 590
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
424-857 |
7.10e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.70 E-value: 7.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 424 QHKAEVEAIMEQLKELKQKGDRdKETLKKAIRAQKERAEKSEEYAEQLHVQLADK-DLYVAEALSTLESWRSRYNQVVKD 502
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIER-LDLIIDEKRQQLERLRREREKAERYQALLKEKrEYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 503 KGDLELEIIVLNDRVTDLVNQQQSLEEKMREdrdsLVERLHRQTA-EYSAFKLENERLKASFAPMEDKLNQAHLEVQQLK 581
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEE----LNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 582 ASVKNYEGMIDNYKSqvmktrleadevaaqlercdkenkmlkdemnkEIEAARRQFQSQLADLQQLPDILKITEAKLAec 661
Cdd:TIGR02169 322 ERLAKLEAEIDKLLA--------------------------------EIEELEREIEEERKRRDKLTEEYAELKEELE-- 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 662 qdqlqgyerknidltaiisDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEatstQNVEFLQVIAKREEA 741
Cdd:TIGR02169 368 -------------------DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD----RLQEELQRLSEELAD 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 742 IHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQaLSKERaaqSKILDLETQLSRTKTELGQLrrtrddvdrryQ 821
Cdd:TIGR02169 425 LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD-LSKYE---QELYDLKEEYDRVEKELSKL-----------Q 489
|
410 420 430
....*....|....*....|....*....|....*.
gi 1046878552 822 SRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFG 857
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHG 525
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
515-850 |
8.23e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 8.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 515 DRVTDLVNqqqSLEEKmredrdslVERLHRQ---TAEYSAFKLENERLKASFAPMEdkLNQAHLEVQQLKASVKNYEGMI 591
Cdd:TIGR02168 189 DRLEDILN---ELERQ--------LKSLERQaekAERYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 592 DNYKSqvmktrlEADEVAAQLErcdkENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERk 671
Cdd:TIGR02168 256 EELTA-------ELQELEEKLE----ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 672 nidltaiisdlrsRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEE 751
Cdd:TIGR02168 324 -------------QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 752 KTRECGSLARQLESA---IEDARRQVEQTKEQALSKERAAQS-KILDLETQLSRTKTELGQLRRTRDDVdrryQSRLQDL 827
Cdd:TIGR02168 391 LELQIASLNNEIERLearLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERL----EEALEEL 466
|
330 340
....*....|....*....|...
gi 1046878552 828 KDRLEQSESTNRSMQNYVQFLKS 850
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQA 489
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
340-806 |
8.45e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 8.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 340 ALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLE 419
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 420 --RSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN 497
Cdd:COG4717 130 lyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 498 QVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMedklnqahleV 577
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV----------L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 578 QQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILkiTEAK 657
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL--REAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 658 LAECQDQLQGYERKNIDLTAI-----ISDLRSRIEHQGDKLELAREKHQASQkenkQLSQKVDELERKLEATSTQNVEfl 732
Cdd:COG4717 358 ELEEELQLEELEQEIAALLAEagvedEEELRAALEQAEEYQELKEELEELEE----QLEELLGELEELLEALDEEELE-- 431
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1046878552 733 QVIAKREEAIHQAQLRLEEKTRECGSLARQLES-----AIEDARRQVEQTKEQALSKERAAQSKILdLETQLSRTKTEL 806
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELEQleedgELAELLQELEELKAELRELAEEWAALKL-ALELLEEAREEY 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-780 |
9.19e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.54 E-value: 9.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 273 TLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELcLKVPECARQHRPGRERQEDCQDS-ERLMEQQGALLKRLAEADSE 351
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLAELEYLRAA-LRLWFAQRRLELLEAELEELRAElARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 352 KAR-LLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVE 430
Cdd:COG4913 325 LDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 431 AIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQL------HVQLADKDL-YVAEAL---STLESWRS------ 494
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALrdalaeALGLDEAELpFVGELIevrPEEERWRGaiervl 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 495 ------------RYNQVVK--DKGDLELEIivlndrVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFkLENErLK 560
Cdd:COG4913 485 ggfaltllvppeHYAAALRwvNRLHLRGRL------VYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAW-LEAE-LG 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 561 ASFAPM----EDKLNQAHLEVQQlkasvknyEGMI-DNYKSQVMKTRLEADEV-------AAQLERCDKENKMLKDEMN- 627
Cdd:COG4913 557 RRFDYVcvdsPEELRRHPRAITR--------AGQVkGNGTRHEKDDRRRIRSRyvlgfdnRAKLAALEAELAELEEELAe 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 628 -----KEIEAARRQFQSQLADLQQLPDI------LKITEAKLAECQDQLQGYERKNIDLTAI---ISDLRSRIEHQGDKL 693
Cdd:COG4913 629 aeerlEALEAELDALQERREALQRLAEYswdeidVASAEREIAELEAELERLDASSDDLAALeeqLEELEAELEELEEEL 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 694 ELAREKHQASQKENKQLSQKVDELERKLEAtstqnVEFLQVIAKREEAIHQ-AQLRLEEKTREcgsLARQLESAIEDARR 772
Cdd:COG4913 709 DELKGEIGRLEKELEQAEEELDELQDRLEA-----AEDLARLELRALLEERfAAALGDAVERE---LRENLEERIDALRA 780
|
....*...
gi 1046878552 773 QVEQTKEQ 780
Cdd:COG4913 781 RLNRAEEE 788
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
322-751 |
1.22e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 322 RERQEDCQDSERLMEQQGALLK-RLAEADSEKARLLLLLQDKDKEVEELL-------QEIQCEKAQAKTASELSKSMESM 393
Cdd:pfam15921 334 REAKRMYEDKIEELEKQLVLANsELTEARTERDQFSQESGNLDDQLQKLLadlhkreKELSLEKEQNKRLWDRDTGNSIT 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 394 RGHLQAQLRCKEAENSRLCMQIKNLERS-GNQHKAEVEAI------MEQLKELKQKGDRDKETLKKAIR---AQKERAEK 463
Cdd:pfam15921 414 IDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIqgknesLEKVSSLTAQLESTKEMLRKVVEeltAKKMTLES 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 464 SEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN------QVVKDKGD------LELEIIVLN---------------DR 516
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQHLKNEGDhlrnvqTECEALKLQmaekdkvieilrqqiEN 573
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 517 VTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLE--------VQQLKAsVKNYE 588
Cdd:pfam15921 574 MTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEkvklvnagSERLRA-VKDIK 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 589 GMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGY 668
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGM 732
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 669 ERKNIDLTAIISDLRSRIEHQGDKLELA-REKHQASQKENKqLSQKV-------DELERKLEATSTQNVEFLQVIAKREE 740
Cdd:pfam15921 733 QKQITAKRGQIDALQSKIQFLEEAMTNAnKEKHFLKEEKNK-LSQELstvatekNKMAGELEVLRSQERRLKEKVANMEV 811
|
490
....*....|.
gi 1046878552 741 AIHQAQLRLEE 751
Cdd:pfam15921 812 ALDKASLQFAE 822
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
276-785 |
2.60e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 276 RQKELLLQKLSTFEETNRTLRDllREQHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQqgalLKRLAEADSEKARL 355
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEE--KEEEYAELQEELEELEEELEELEAELEELREELEKLEK----LLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 356 LLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRC----KEAENSRLCMQIKNLERSGNQHKAEVEA 431
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQlslaTEEELQDLAEELEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 432 IMEQLKELKQKGDRdketlkkaIRAQKERAEKSEEYAEQLHVQLAdkdlyVAEALSTLESWRSRYNQVVKDKGDLELEII 511
Cdd:COG4717 218 AQEELEELEEELEQ--------LENELEAAALEERLKEARLLLLI-----AAALLALLGLGGSLLSLILTIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 512 VLNDRVTDLVNQQQSLEEKMREDRDSLVERlhrqtaeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYegmi 591
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALE-----------ELEEEELEELLAALGLPPDLSPEELLELLDRIEEL---- 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 592 dnyksQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLpdilkitEAKLAECQDQLQGYERK 671
Cdd:COG4717 350 -----QELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-------KEELEELEEQLEELLGE 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 672 NIDLTAIIS--DLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEatstqnveflqvIAKREEAIHQAQLRL 749
Cdd:COG4717 418 LEELLEALDeeELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGE------------LAELLQELEELKAEL 485
|
490 500 510
....*....|....*....|....*....|....*.
gi 1046878552 750 EEKTRECGSLaRQLESAIEDARRQVEQTKEQALSKE 785
Cdd:COG4717 486 RELAEEWAAL-KLALELLEEAREEYREERLPPVLER 520
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
322-855 |
3.84e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 3.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 322 RERQEDCQDSERLMEQqgaLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQ-------CEKAQAKTASELSKSMESMR 394
Cdd:PRK02224 247 EERREELETLEAEIED---LRETIAETEREREELAEEVRDLRERLEELEEERDdllaeagLDDADAEAVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 395 GHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELkqkgDRDKETLKKAIRAQKERAEKSEEYAEQLHVQ 474
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL----ESELEEAREAVEDRREEIEELEEEIEELRER 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 475 LADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDlvNQQ-----------QSLEEKMR----EDRDSLV 539
Cdd:PRK02224 400 FGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE--AEAlleagkcpecgQPVEGSPHvetiEEDRERV 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 540 ERLhrqTAEYSAFKLENERLKASFAPMEDkLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQlercdken 619
Cdd:PRK02224 478 EEL---EAELEDLEEEVEEVEERLERAED-LVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER-------- 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 620 kmlKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERknidltaiISDLRSRIEHQGDKLELAREK 699
Cdd:PRK02224 546 ---AAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER--------IRTLLAAIADAEDEIERLREK 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 700 HQASQKENKQLSQKVDEL-ERKLEATSTQNveflqviakrEEAIHQAQLRLEektrecgslarQLESAIEDARRQVEQTK 778
Cdd:PRK02224 615 REALAELNDERRERLAEKrERKRELEAEFD----------EARIEEAREDKE-----------RAEEYLEQVEEKLDELR 673
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046878552 779 EqalsKERAAQSKILDLETQLSRtktelgqlrrtrddvdrryqsrLQDLKDRLEQSESTnrsmqnyVQFLKSSYANV 855
Cdd:PRK02224 674 E----ERDDLQAEIGAVENELEE----------------------LEELRERREALENR-------VEALEALYDEA 717
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
545-786 |
3.90e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 3.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 545 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLercdKENKMLKD 624
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL----AELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 625 EMNKEIEAARRQFQSQLADLQQLPdilKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQ 704
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 705 KENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSK 784
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
..
gi 1046878552 785 ER 786
Cdd:COG4942 251 LK 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-840 |
1.54e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 608 VAAQLERCDKENKMLKdEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIE 687
Cdd:COG4942 15 AAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 688 HQGDKLElAREKHQASQKENKQLSQKVDELERKLEATSTQNV--------EFLQVIAKREEAIHQAQLRLEEKTRECGSL 759
Cdd:COG4942 94 ELRAELE-AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAvrrlqylkYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 760 ARQLESAIEDARRQveqtkEQALSKERAAQSKIL-DLETQLSRTKTELGQLRRTrddvdrryQSRLQDLKDRLEQSESTN 838
Cdd:COG4942 173 RAELEALLAELEEE-----RAALEALKAERQKLLaRLEKELAELAAELAELQQE--------AEELEALIARLEAEAAAA 239
|
..
gi 1046878552 839 RS 840
Cdd:COG4942 240 AE 241
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
364-831 |
1.97e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.96 E-value: 1.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 364 KEVEELLQEiqcEKAQAKTASELSKsMESMRGHLQAQLrckEAENSRLcmqikNLERSGNQHKAEVEAIMEQLKELKQKG 443
Cdd:COG3096 296 GARRQLAEE---QYRLVEMARELEE-LSARESDLEQDY---QAASDHL-----NLVQTALRQQEKIERYQEDLEELTERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 444 DRDKETLKKA----IRAQkERAEKSEEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVKDKGDL-------ELEIIV 512
Cdd:COG3096 364 EEQEEVVEEAaeqlAEAE-ARLEAAEEEVDSLKSQLAD----YQQALDVQQTRAIQYQQAVQALEKAralcglpDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 513 LNDRVTDLVNQQQSLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlkasfapmedklnqahleVQQLKASVknyegm 590
Cdd:COG3096 439 AEDYLAAFRAKEQQATEEVLelEQKLSVADAARRQFEK--AYEL----------------------VCKIAGEV------ 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 591 idnyksqvmkTRLEADEVAAQLERCDKENKMLkdemnkeieAARR-QFQSQLADLQQLPDILKITEAKLAECQDQLQGYE 669
Cdd:COG3096 489 ----------ERSQAWQTARELLRRYRSQQAL---------AQRLqQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQL 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 670 RKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELerkleatstqnveflqviAKREEAIHQAQLRL 749
Cdd:COG3096 550 DAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKEL------------------AARAPAWLAAQDAL 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 750 EektrecgSLARQLESAIEDArRQVEQTKEQALSKERAAQSkildLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKD 829
Cdd:COG3096 612 E-------RLREQSGEALADS-QEVTAAMQQLLEREREATV----ERDELAARKQALESQIERLSQPGGAEDPRLLALAE 679
|
..
gi 1046878552 830 RL 831
Cdd:COG3096 680 RL 681
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
513-832 |
3.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 513 LNDRVTDLVNQQQSLEEKMRE---DRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG 589
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRienRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 590 MIDNYKSQVMKTRLEADEVAAQLERC-DKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGY 668
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 669 ERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLR 748
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 749 LEEKTRECGSLARQLeSAIEDARRQVEQTKEQALSKERaAQSKILDLETQLSRtkteLGQLRRTRDDVDRRYQSRLQDLK 828
Cdd:TIGR02169 919 LSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRA----LEPVNMLAIQEYEEVLKRLDELK 992
|
....
gi 1046878552 829 DRLE 832
Cdd:TIGR02169 993 EKRA 996
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
285-614 |
5.15e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 5.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 285 LSTFEETNRTLRDLLREQHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEadsekarlllllqDKDK 364
Cdd:TIGR02168 660 VITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------------ELSR 726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 365 EVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLErsgnQHKAEVEAIMEQLKELKQKGD 444
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE----AEIEELEAQIEQLKEELKALR 802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 445 RDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQ 524
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 525 QSLEEKM---REDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKN-YEGMIDNYKSQVMK 600
Cdd:TIGR02168 883 ASLEEALallRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEeYSLTLEEAEALENK 962
|
330
....*....|....
gi 1046878552 601 TRLEADEVAAQLER 614
Cdd:TIGR02168 963 IEDDEEEARRRLKR 976
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
325-846 |
1.00e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 325 QEDCQDSERLMEQQGALLKRLAEADSEKARLLLllQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCK 404
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRL--ELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 405 EAEN-SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyva 483
Cdd:COG4913 336 GGDRlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE------ 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 484 ealstlesWRSRYNQVVKDKGDLELEIIVLNDRVT----DLVNQQQSLEEKMREDRDSL-------------------VE 540
Cdd:COG4913 410 --------AEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEALGLDEAELpfvgelievrpeeerwrgaIE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 541 R-LHRQtaeysAFKL--ENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMidnyksqvmktRLEADEVAAQLERcdK 617
Cdd:COG4913 482 RvLGGF-----ALTLlvPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERP-----------RLDPDSLAGKLDF--K 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 618 ENKM---LKDEMNKEIEAAR----RQFQ------------SQLADLQQLPDILKI---------TEAKLAECQDQLQGYE 669
Cdd:COG4913 544 PHPFrawLEAELGRRFDYVCvdspEELRrhpraitragqvKGNGTRHEKDDRRRIrsryvlgfdNRAKLAALEAELAELE 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 670 RKNIDLTAIISDLRSRIEHQGDKLELAR--EKHQASQKENKQLSQKVDELERKLEATSTQNVEfLQVIAKREEAIHQAQL 747
Cdd:COG4913 624 EELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSDD-LAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 748 RLEEKTRECGSLARQLESAIEDARRQVEQTKEQAlskERAAQSKILDLETQLSRTKTELGQlRRTRDDVDRRYQSRLQDL 827
Cdd:COG4913 703 ELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARLELRALLEERFAAALG-DAVERELRENLEERIDAL 778
|
570 580
....*....|....*....|
gi 1046878552 828 KDRLEQSEST-NRSMQNYVQ 846
Cdd:COG4913 779 RARLNRAEEElERAMRAFNR 798
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
397-786 |
1.15e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 397 LQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKE----------------- 459
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkkikelekqlnqlks 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 460 -----RAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVKdkgDLELEIIVLNDRVTDLVNQQQSLEEKMREd 534
Cdd:TIGR04523 296 eisdlNNQKEQDWNKELKSELKNQE----KKLEEIQNQISQNNKIIS---QLNEQISQLKKELTNSESENSEKQRELEE- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 535 RDSLVERLHRQTAEYsafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY-------EGMIDNYKSQVMKTRLEADE 607
Cdd:TIGR04523 368 KQNEIEKLKKENQSY---KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLqqekellEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 608 VA---AQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 684
Cdd:TIGR04523 445 LTnqdSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 685 RIEhqgdklELAREKhqaSQKENKqLSQKVDELER-KLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQL 763
Cdd:TIGR04523 525 KIE------KLESEK---KEKESK-ISDLEDELNKdDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK 594
|
410 420
....*....|....*....|...
gi 1046878552 764 ESAIEDARRQVEQTKEQALSKER 786
Cdd:TIGR04523 595 EKEKKDLIKEIEEKEKKISSLEK 617
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
624-833 |
1.77e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 624 DEMNKEIEAARRQfQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTaiISDLRSRIEHQGDKLELAREKHQAS 703
Cdd:COG4913 238 ERAHEALEDAREQ-IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 704 QKENKQLSQKVDELERKLEATSTQNVEFLqviakrEEAIHQAQLRLEEKTRECGSLARQL----------ESAIEDARRQ 773
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEQL------EREIERLERELEERERRRARLEALLaalglplpasAEEFAALRAE 388
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046878552 774 VEQTKEQALSKERAAQ-------SKILDLETQLSRTKTELGQLrrtrDDVDRRYQSRLQDLKDRLEQ 833
Cdd:COG4913 389 AAALLEALEEELEALEealaeaeAALRDLRRELRELEAEIASL----ERRKSNIPARLLALRDALAE 451
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
561-790 |
1.87e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 561 ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLK---DEMNKEIEAARRQF 637
Cdd:COG3883 9 PTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQaeiAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 638 QSQLADLQQLPDILKITEAKLaecqdqlqgyERKNI-DLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDE 716
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLL----------GSESFsDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAE 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046878552 717 LERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQS 790
Cdd:COG3883 159 LEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
591-854 |
2.20e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 591 IDNYKSQVMKTRLEADEVAAQLERCD-------KENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQD 663
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDliidekrQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 664 QLQGYERKNIDLTAIISDLRSRIEHQGDKL-ELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAI 742
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLeELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 743 HQAQLRLEEKTREcgslARQLESAIEDARRQVEQTKE--QALSKERAA-QSKILDLETQLSRTKTELGQlrrtrddvdrr 819
Cdd:TIGR02169 325 AKLEAEIDKLLAE----IEELEREIEEERKRRDKLTEeyAELKEELEDlRAELEEVDKEFAETRDELKD----------- 389
|
250 260 270
....*....|....*....|....*....|....*
gi 1046878552 820 YQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYAN 854
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
204-776 |
2.64e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 204 LRHNIERIKEEKDftMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTL-TRQKELLL 282
Cdd:COG4913 267 ARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 283 QKLSTFEET-NRTLRDLLR-EQHCKELCLKVP----ECARQHRPGRERQEDCQdserlmEQQGALLKRLAEADSEKarll 356
Cdd:COG4913 345 REIERLERElEERERRRARlEALLAALGLPLPasaeEFAALRAEAAALLEALE------EELEALEEALAEAEAAL---- 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 357 lllQDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLC--MQIKNLERS---------GNQ- 424
Cdd:COG4913 415 ---RDLRRELRELEAEIA---SLERRKSNIPARLLALRDALAEALGLDEAELPFVGelIEVRPEEERwrgaiervlGGFa 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 425 --------HKAEVEAIMEQLKeLKQK--GDRDKETLKKAIRAQKER---AEKSE----EYAEQLHVQLADKDLYV----A 483
Cdd:COG4913 489 ltllvppeHYAAALRWVNRLH-LRGRlvYERVRTGLPDPERPRLDPdslAGKLDfkphPFRAWLEAELGRRFDYVcvdsP 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 484 EALS------TLE----SWRSRYnqvVKDKGDLELEIIVLN----DRVTDLVNQQQSLEEKMREdRDSLVERLHRQTAEY 549
Cdd:COG4913 568 EELRrhpraiTRAgqvkGNGTRH---EKDDRRRIRSRYVLGfdnrAKLAALEAELAELEEELAE-AEERLEALEAELDAL 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 550 SAFKLENERLkASFAPMEDKLNQAHLEVQQLKASVKNyegmIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEM--- 626
Cdd:COG4913 644 QERREALQRL-AEYSWDEIDVASAEREIAELEAELER----LDASSDDLAALEEQLEELEAELEELEEELDELKGEIgrl 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 627 NKEIEAARRQFQSQLADLQQLPDILKITEAKLAE------CQDQLQGYERKNidLTAIISDLRSRIEHQGDKLELAREKH 700
Cdd:COG4913 719 EKELEQAEEELDELQDRLEAAEDLARLELRALLEerfaaaLGDAVERELREN--LEERIDALRARLNRAEEELERAMRAF 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 701 QASQKENkqlsqkVDELERKLEAtstqNVEFLQVIAK-REEAIHQ-----AQLRLEEKTRECGSLARQLESAIEDARRQV 774
Cdd:COG4913 797 NREWPAE------TADLDADLES----LPEYLALLDRlEEDGLPEyeerfKELLNENSIEFVADLLSKLRRAIREIKERI 866
|
..
gi 1046878552 775 EQ 776
Cdd:COG4913 867 DP 868
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
275-791 |
2.69e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 275 TRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRPGRERQE--DCQDSERLMEQQGALLKRLAEaDSEK 352
Cdd:PTZ00121 1087 NRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDarKAEEARKAEDAKRVEIARKAE-DARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 353 ARLLLLLQDKdKEVEELLQEIQCEKAQAKTASELSKSMESMRGHlQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAI 432
Cdd:PTZ00121 1166 AEEARKAEDA-KKAEAARKAEEVRKAEELRKAEDARKAEAARKA-EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 433 MEQlKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKdlyVAEALSTLESWRSRYNQVVKDKGDLELEIIV 512
Cdd:PTZ00121 1244 KAE-EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEE---KKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 513 LNDRVTDLVNQQQSLEEKMREDRDSlvERLHRQTAEYSAFKLENERLKASFAPME--------DKLNQAHLEVQQLKASV 584
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKA--AEAAKAEAEAAADEAEAAEEKAEAAEKKkeeakkkaDAAKKKAEEKKKADEAK 1397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 585 KNYEGmiDNYKSQVMKTRLEADEVAAQLERcDKENKMLKDEMNKEIEAARR--QFQSQLADLQQLPDILKITE------- 655
Cdd:PTZ00121 1398 KKAEE--DKKKADELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKadEAKKKAEEAKKAEEAKKKAEeakkade 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 656 -AKLAECQDQLQGYERKNIDLTAIISDLRSRIE--HQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFL 732
Cdd:PTZ00121 1475 aKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1046878552 733 QVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSK 791
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
342-777 |
4.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 4.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 342 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLC 412
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 413 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ETLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 489
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 490 ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQqqsLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASfapmedk 569
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAE------- 1623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 570 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKtrleadevAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQqlpd 649
Cdd:PTZ00121 1624 ------ELKKAEEEKKKVEQLKKKEAEEKKK--------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE---- 1685
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 650 ilkitEAKLAECQDQLQGYERKNIDltaiisDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNV 729
Cdd:PTZ00121 1686 -----DEKKAAEALKKEAEEAKKAE------ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 1046878552 730 EFLQVIAKREEAIHQAQLRLEEKTrecGSLARQLESAIEDARRQVEQT 777
Cdd:PTZ00121 1755 EKKKIAHLKKEEEKKAEEIRKEKE---AVIEEELDEEDEKRRMEVDKK 1799
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
494-711 |
8.50e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 49.24 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 494 SRYNQVVKDKgdleleIIVLNDRVTDLVNQQQSLEEKMREDRDsLVERLHRQTAEysafklENERLKASFAPMEDKLNQA 573
Cdd:PHA02562 166 SEMDKLNKDK------IRELNQQIQTLDMKIDHIQQQIKTYNK-NIEEQRKKNGE------NIARKQNKYDELVEEAKTI 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 574 HLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDemNKEIEAARRQFQSQLADLQQLPDILKI 653
Cdd:PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEGPDRITKIKDKLKE 310
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1046878552 654 TEAKLAECQDQLQGYERKNIDLTAI---ISDLRSRIEHQGDKLELAREKHQASQKENKQLS 711
Cdd:PHA02562 311 LQHSLEKLDTAIDELEEIMDEFNEQskkLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-781 |
9.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 9.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 129 RLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVK-----MQKGERQMAKRFLeerkeeleevahELAETEHENTV 203
Cdd:TIGR02169 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAekereLEDAEERLAKLEA------------EIDKLLAEIEE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 204 LRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTctdINTLTRQKELLLQ 283
Cdd:TIGR02169 341 LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL---KRELDRLQEELQR 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 284 KLSTFEETNRTLRDLLREQhcKELclkvpecarqhrpgRERQEDCQDSERLMEQQ-GALLKRLAEADSEKARLLLLLQDK 362
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKI--NEL--------------EEEKEDKALEIKKQEWKlEQLAADLSKYEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 363 DKEVEELLQEIQCEKAQAKTASELSKSMesmrghlQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAimeqlkelkQK 442
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGG-------RAVEEVLKASIQGVHGTVAQLGSVGERYATAIEV---------AA 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 443 GDR-------DKETLKKAIRAQKERAEKSEEY-------AEQLHVQLADKDLYVAEALSTLE---SWRSRYNQVVKDKG- 504
Cdd:TIGR02169 546 GNRlnnvvveDDAVAKEAIELLKRRKAGRATFlplnkmrDERRDLSILSEDGVIGFAVDLVEfdpKYEPAFKYVFGDTLv 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 505 --DLEL--EIIVLNDRVT---DLVNQQQSLEEKMREDRD------SLVERLHRQTAEYSAFKLENERLKASFAPMEDKLN 571
Cdd:TIGR02169 626 veDIEAarRLMGKYRMVTlegELFEKSGAMTGGSRAPRGgilfsrSEPAELQRLRERLEGLKRELSSLQSELRRIENRLD 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 572 QAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEM---NKEIEAARR---QFQSQLADLQ 645
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELkelEARIEELEEdlhKLEEALNDLE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 646 QlpdilKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATS 725
Cdd:TIGR02169 786 A-----RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046878552 726 TQNVEFLQVIAKREEAIHQAQ----------LRLEEKTRECGSLARQLESAIEDARRQVEQTKEQA 781
Cdd:TIGR02169 861 GKKEELEEELEELEAALRDLEsrlgdlkkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
685-840 |
1.49e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 685 RIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEatstqnvEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLE 764
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELE-------ELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1046878552 765 SAIEDaRRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRS 840
Cdd:COG1196 306 RLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
147-723 |
2.00e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 147 RYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHEntvlrhnIERIKEEKDFTMLQKKHLQ 226
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-------LARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 227 QEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTctdINTLTRQKELLLQKLSTFEETNRTLRDLLREqhcke 306
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEELEELAEE----- 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 307 lclkvpecarQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASEL 386
Cdd:COG1196 388 ----------LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 387 SKSMESMRGHLQAQLRCKEAensrlcmQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAeksee 466
Cdd:COG1196 458 EEALLELLAELLEEAALLEA-------ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA----- 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 467 yaeqLHVQLADKDLYVAEALSTLESWRSryNQVVKDKGDLELEIIVLND----RVTDLVNQQQSLEEKMREDRDSLVERL 542
Cdd:COG1196 526 ----VAVLIGVEAAYEAALEAALAAALQ--NIVVEDDEVAAAAIEYLKAakagRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 543 HRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYE------GMIDNYKSQVMKTRLEADEVAAQLERcd 616
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRlrevtlEGEGGSAGGSLTGGSRRELLAALLEA-- 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 617 kenkmlKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELA 696
Cdd:COG1196 678 ------EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*..
gi 1046878552 697 REKHQASQKENKQLSQKVDELERKLEA 723
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
434-806 |
2.31e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.13 E-value: 2.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 434 EQLK-ELKQ----KGDRDKET---LKKAIRA---QKERAEKSEEY----------AEQLHVQLADKDLYVAEALSTLESw 492
Cdd:PRK10929 26 KQITqELEQakaaKTPAQAEIveaLQSALNWleeRKGSLERAKQYqqvidnfpklSAELRQQLNNERDEPRSVPPNMST- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 493 rsrynqvvkdkGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPmEDKLNQ 572
Cdd:PRK10929 105 -----------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTP-NTPLAQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 573 AHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKMLKDEMNkeieaARRQFQSQLAdlq 645
Cdd:PRK10929 173 AQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA--- 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 646 qlpdiLKITEaKLAECQDqlqgyerkniDLTAIISdlrsriehqgDKLELAREkhqASQKENKQlSQKVDELERKLEATS 725
Cdd:PRK10929 243 -----LESTE-LLAEQSG----------DLPKSIV----------AQFKINRE---LSQALNQQ-AQRMDLIASQQRQAA 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 726 TQNVEFLQVI-AKREEA-----------IHQAQL-RLEEKTRecgslARQLESAIEDAR----------------RQVEQ 776
Cdd:PRK10929 293 SQTLQVRQALnTLREQSqwlgvsnalgeALRAQVaRLPEMPK-----PQQLDTEMAQLRvqrlryedllnkqpqlRQIRQ 367
|
410 420 430
....*....|....*....|....*....|
gi 1046878552 777 TKEQALSkerAAQSKILDleTQLsRTKTEL 806
Cdd:PRK10929 368 ADGQPLT---AEQNRILD--AQL-RTQREL 391
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
629-794 |
4.40e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 629 EIEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELARekhqaSQKENK 708
Cdd:COG1579 21 RLEHRLKELPAELAELEDE---LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-----NNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 709 QLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQveqtkEQALSKERAA 788
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE-----LEELEAEREE 167
|
....*.
gi 1046878552 789 QSKILD 794
Cdd:COG1579 168 LAAKIP 173
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
313-825 |
5.17e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 313 ECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDK--DKEVEELL-QEIQCEKAQAKTASELSKS 389
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKttLTQKLQSLcKELDILQREQATIDTRTSA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 390 MESMRGHLQAQLRCKEAENSRLCMQ---IKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEE 466
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCaaaITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 467 YAEQ--------LHVQLADKDLYVAEALStleswrSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDS- 537
Cdd:TIGR00618 499 LQEEpcplcgscIHPNPARQDIDNPGPLT------RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSf 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 538 --LVERLHRQTAEYSAFKLENERLKaSFAPMEDKL-------NQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEV 608
Cdd:TIGR00618 573 siLTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSEAedmlaceQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 609 AAQLERCDKENKMLKDEMNKEIEAARRqfQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEH 688
Cdd:TIGR00618 652 QLTLTQERVREHALSIRVLPKELLASR--QLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS 729
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 689 QGDKLELAREKHQASQKE-NKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLArQLESAI 767
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKElMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEI 808
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046878552 768 EDARRQVEQTK----EQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQ 825
Cdd:TIGR00618 809 GQEIPSDEDILnlqcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
332-831 |
6.26e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 332 ERLMEQQGALLKRLAEADSEKARLLLllqdkdkevEELLQEIQCE-KAQAKTASELSKSMESMRGHLQaqlRCKEAEnsR 410
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAE---------QYRLVEMARElAELNEAESDLEQDYQAASDHLN---LVQTAL--R 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 411 LCMQIKnlersgnQHKAEVEAIMEQLKELKQKgdrdKETLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyVAEALSTLE 490
Cdd:PRK04863 346 QQEKIE-------RYQADLEELEERLEEQNEV----VEEADEQQEENEARAEAAEEEVDELKSQLAD----YQQALDVQQ 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 491 SWRSRYNQVVK--DK-----GDLELEIIVLNDRVTDLVNQQQSLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlka 561
Cdd:PRK04863 411 TRAIQYQQAVQalERakqlcGLPDLTADNAEDWLEEFQAKEQEATEELLslEQKLSVAQAAHSQFEQ--AYQL------- 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 562 sfapmedklnqahleVQQLKASVknyegmidnyksqvmkTRLEADEVAAQLERCDKENKMLkdemnkeieAARR-QFQSQ 640
Cdd:PRK04863 482 ---------------VRKIAGEV----------------SRSEAWDVARELLRRLREQRHL---------AEQLqQLRMR 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 641 LADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELErk 720
Cdd:PRK04863 522 LSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA-- 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 721 leatstqnveflqviaKREEAIHQAQLRLEEktrecgsLARQLESAIEDArRQVEQTKEQALSKERAAQSKILDLETQLS 800
Cdd:PRK04863 600 ----------------ARAPAWLAAQDALAR-------LREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQ 655
|
490 500 510
....*....|....*....|....*....|.
gi 1046878552 801 RTKTELGQLRRTRDDVDrryqSRLQDLKDRL 831
Cdd:PRK04863 656 ALDEEIERLSQPGGSED----PRLNALAERF 682
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
192-718 |
6.91e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 192 HELAETEHENTVLRHniERIKEEKDFTMLQKKhlQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDI 271
Cdd:TIGR04523 180 KEKLNIQKNIDKIKN--KLLKLELLLSNLKKK--IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 272 NTLTRQ----KELLLQKLSTFEETNRTLRDLlrEQHCKELCLKVPECARQHRPG---------RERQEDCQDSERLMEQQ 338
Cdd:TIGR04523 256 NQLKDEqnkiKKQLSEKQKELEQNNKKIKEL--EKQLNQLKSEISDLNNQKEQDwnkelkselKNQEKKLEEIQNQISQN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 339 GALLKRLAEA----DSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQ 414
Cdd:TIGR04523 334 NKIISQLNEQisqlKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 415 IKNLErsgnQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLE---- 490
Cdd:TIGR04523 414 IKKLQ----QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqk 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 491 ---SWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlhRQTAEYSAFKLENERLKASFAPME 567
Cdd:TIGR04523 490 elkSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL--EDELNKDDFELKKENLEKEIDEKN 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 568 DKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEmNKEIEAARRQFQSQLADLQQL 647
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE-NEKLSSIIKNIKSKKNKLKQE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 648 ----PDILKITEAKLAECQDQLQGYERKNIDLTAIISD------------LRSRIEHQgdKLELAREKHQASQKENKQLS 711
Cdd:TIGR04523 647 vkqiKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDwlkelslhykkyITRMIRIK--DLPKLEEKYKEIEKELKKLD 724
|
....*..
gi 1046878552 712 QKVDELE 718
Cdd:TIGR04523 725 EFSKELE 731
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
605-804 |
7.12e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 605 ADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 684
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 685 RIEHQGDKL--------------------------------ELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFL 732
Cdd:COG4942 98 ELEAQKEELaellralyrlgrqpplalllspedfldavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046878552 733 QVIAKREEAihQAQLRLEEKTREcgSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKT 804
Cdd:COG4942 178 ALLAELEEE--RAALEALKAERQ--KLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-745 |
8.75e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 146 NRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERIKEEKDftmlqkkHL 225
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN-------EL 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 226 QQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR--EQH 303
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDrvEKE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 304 CKELCLKVPECARQHRPGRERQEDCQDSERLMEQQG----ALLKRLAEADSEKA---------RLLLLLQDKDKEVEELL 370
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIqgvhGTVAQLGSVGERYAtaievaagnRLNNVVVEDDAVAKEAI 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 371 QEIQCEKAQAKTASELSK---------------------------------------------SMESMRGHL-------- 397
Cdd:TIGR02169 565 ELLKRRKAGRATFLPLNKmrderrdlsilsedgvigfavdlvefdpkyepafkyvfgdtlvveDIEAARRLMgkyrmvtl 644
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 398 ---------------------QAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdketLKKAIRA 456
Cdd:TIGR02169 645 egelfeksgamtggsraprggILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSD----ASRKIGE 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 457 QKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELeiivlndrvtDLVNQQQSLEEKMREDRD 536
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE----------DLHKLEEALNDLEARLSH 790
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 537 SLVERLhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM--------------IDNYKSQVMKTR 602
Cdd:TIGR02169 791 SRIPEI---QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQridlkeqiksiekeIENLNGKKEELE 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 603 LEADEVAAQLERCDKENKMLK---DEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL---- 675
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKkerDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDeeip 947
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046878552 676 --TAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQA 745
Cdd:TIGR02169 948 eeELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
209-842 |
1.10e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 209 ERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTF 288
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 289 EETNRTLrdLLREQHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEE 368
Cdd:pfam15921 172 IEQLRKM--MLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 369 LlqeiqceKAQAKTASELskSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKE---LKQKGDR 445
Cdd:pfam15921 250 L-------KSESQNKIEL--LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNqnsMYMRQLS 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 446 DKETLKKAIRAQKERAEKS-EEYAEQLHVQLADKDLYVAEAlstleswRSRYNQVVKDKGDLELEiivLNDRVTDLVNQQ 524
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMyEDKIEELEKQLVLANSELTEA-------RTERDQFSQESGNLDDQ---LQKLLADLHKRE 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 525 QSL-----EEKMREDRDS----LVERLHRQTAEYSafkLENERLKASFAPMEDKL--------------NQAHLEVQQLK 581
Cdd:pfam15921 391 KELslekeQNKRLWDRDTgnsiTIDHLRRELDDRN---MEVQRLEALLKAMKSECqgqmerqmaaiqgkNESLEKVSSLT 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 582 ASVKNYEGMIDNYKSQVM--KTRLEADE-VAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQlpdiLKITEAKL 658
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTakKMTLESSErTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQH----LKNEGDHL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 659 AECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDelERKLEATstqnvEFLQVIAKR 738
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIN--DRRLELQ-----EFKILKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 739 EEAIHQAQLRLEEKTRECGSLARQLESAIEdARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDR 818
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLR-AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
650 660
....*....|....*....|....
gi 1046878552 819 RYQSRLQDLKDRLEQSESTNRSMQ 842
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSME 719
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
301-844 |
1.11e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 301 EQHCKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEA-----DSEKARLLLLLQDKDKEVEELLQEIQC 375
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEakkaeEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 376 EKAQA----KTASELSKSMESMRGhlQAQLRCKEAENSRLCMQIKNLERSGNQHKAE-VEAIMEQLK---ELKQKGDRDK 447
Cdd:PTZ00121 1327 AKKKAdaakKKAEEAKKAAEAAKA--EAEAAADEAEAAEEKAEAAEKKKEEAKKKADaAKKKAEEKKkadEAKKKAEEDK 1404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 448 ---ETLKKAiRAQKERAEKSEEYAEQlhVQLADKDLYVAEALSTLESWRSRYNQVVKDKgdlELEIIVLNDRVTDlvNQQ 524
Cdd:PTZ00121 1405 kkaDELKKA-AAAKKKADEAKKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKAE---EAKKKAEEAKKAD--EAK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 525 QSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLE 604
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 605 ---ADEV----AAQLERCDKENKMLKDEMNKEIEAARRQfqsQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTA 677
Cdd:PTZ00121 1557 lkkAEEKkkaeEAKKAEEDKNMALRKAEEAKKAEEARIE---EVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 678 IISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLE----ATSTQNVEFLQVIAKREEAIHQAQLRleEKT 753
Cdd:PTZ00121 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEeakkAEEDEKKAAEALKKEAEEAKKAEELK--KKE 1711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 754 RECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLE-----TQLSRTKTELGQLRRTRDDVDRRYQSRLQDLK 828
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEekkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
570
....*....|....*.
gi 1046878552 829 DRLEQSESTNRSMQNY 844
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNF 1807
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
627-848 |
1.13e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 627 NKEIEAARRQFQSQLADLQQlpdilkiteaKLAECQDQLQGYERKN--IDLTAIISDLRSRIEHQGDKLELAREKHQASQ 704
Cdd:COG3206 170 REEARKALEFLEEQLPELRK----------ELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 705 kenkqlsQKVDELERKLEATSTQNVEFLQ--VIAKREEAIHQAQLRLEEKTRECG--------------SLARQLESAIE 768
Cdd:COG3206 240 -------ARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTpnhpdvialraqiaALRAQLQQEAQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 769 DARRQVEQTKEQALSKERAAQSKILDLETQ---LSRTKTELGQLRRTRDDVDRRYQSrlqdLKDRLEQSESTNRSMQNYV 845
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARlaeLPELEAELRRLEREVEVARELYES----LLQRLEEARLAEALTVGNV 388
|
...
gi 1046878552 846 QFL 848
Cdd:COG3206 389 RVI 391
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
555-809 |
1.18e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.44 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 555 ENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENkmlkdemnkeiEAAR 634
Cdd:pfam19220 4 RNELLRVRLGEMADRLE----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAY-----------GKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 635 RQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKV 714
Cdd:pfam19220 69 RELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 715 DELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLAR---QLESAIEDARRQVEQTkEQALSKERAAQSK 791
Cdd:pfam19220 149 QAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRrlaELETQLDATRARLRAL-EGQLAAEQAERER 227
|
250
....*....|....*....
gi 1046878552 792 IL-DLETQLSRTKTELGQL 809
Cdd:pfam19220 228 AEaQLEEAVEAHRAERASL 246
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
428-855 |
1.75e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 428 EVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHvqlADKDLYvAEAlstlESWRSRynqVVKDKGDLE 507
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQ---AETELC-AEA----EEMRAR---LAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 508 LEIIVLNDRV---TDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASV 584
Cdd:pfam01576 75 EILHELESRLeeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 585 KNYEGMIDNYKSQVM----------KTRLEADEVAAQLERCDKENKMLKDEMNK---EIEAARRQFQSQLADLQQLPDIL 651
Cdd:pfam01576 155 KLLEERISEFTSNLAeeeekakslsKLKNKHEAMISDLEERLKKEEKGRQELEKakrKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 652 KITEAK----LAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQ 727
Cdd:pfam01576 235 RAQLAKkeeeLQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 728 NVEFLQVIAKREEAIHQAQLRLEEKTR----ECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSkildLETQLSRTK 803
Cdd:pfam01576 315 TAAQQELRSKREQEVTELKKALEEETRsheaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQA----LESENAELQ 390
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1046878552 804 TELGQLRRTRD---DVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV 855
Cdd:pfam01576 391 AELRTLQQAKQdseHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESV 445
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
193-805 |
1.98e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 193 ELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKEclmsKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDIN 272
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 273 TLtRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPEcarqhrpgrerqedcqdsERLMEQQGALLKRLAEADSEK 352
Cdd:PRK03918 277 EL-EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL------------------SRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 353 ARLLLLLqdkdKEVEELLQEIQCEKAQAKTASELSKSMESMRGhLQAQLRCKEAEnsRLCMQIKNLERSGNQHKAEVEAI 432
Cdd:PRK03918 338 ERLEELK----KKLKELEKRLEELEERHELYEEAKAKKEELER-LKKRLTGLTPE--KLEKELEELEKAKEEIEEEISKI 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 433 MEQLKELKQKGDRDKETLKKAIRAQKE----RAEKSEEYAEQLhvqLADKDLYVAEALSTLESWRSRYNQVVKDKGDLEL 508
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKAKGKcpvcGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 509 EIIVLND--RVTDLVNQQQSLEEKMREDRdslVERLHRQTAEYSAFKLENERLKASFAPMEDKLNqahlEVQQLKASVKN 586
Cdd:PRK03918 488 VLKKESEliKLKELAEQLKELEEKLKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 587 YEGMIDNYKSqvmktrlEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSqladLQQLPDILKITEAKLAECQDQLQ 666
Cdd:PRK03918 561 LEKKLDELEE-------ELAELLKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEEELD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 667 GYERKNIDLTAIISDLRSRIEHQG-----DKLELAREKHQASQKENKQLSQKVDELERKLEaTSTQNVEFLQviaKREEA 741
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE-EIKKTLEKLK---EELEE 705
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046878552 742 IHQAQLRLEektrecgslarQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTE 805
Cdd:PRK03918 706 REKAKKELE-----------KLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTE 758
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
143-842 |
2.56e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 143 CKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEErkeeLEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQK 222
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKA----LEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 223 KHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQ 302
Cdd:pfam02463 246 LRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 303 HCKELCLKVPECARQH----RPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKA 378
Cdd:pfam02463 326 AEKELKKEKEEIEELEkelkELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 379 QAKTASELSKSMESMRGHLQAQLRCKEAENSRLcMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQK 458
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 459 ERAEKSEEYAEQLHVQLADK-------------DLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQ 525
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKarsglkvllalikDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 526 SLEEKMR-----------EDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQ-QLKASVKNYEG---- 589
Cdd:pfam02463 565 KLVRALTelplgarklrlLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGIlKDTELTKLKESakak 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 590 ------MIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQ-------FQSQLADLQQLPDILKITEA 656
Cdd:pfam02463 645 esglrkGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRqleikkkEQREKEELKKLKLEAEELLA 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 657 KLAECQDQLQGYERKNIDLTaIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVI- 735
Cdd:pfam02463 725 DRVQEAQDKINEELKLLKQK-IDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEEl 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 736 -AKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRD 814
Cdd:pfam02463 804 rALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQK 883
|
730 740
....*....|....*....|....*...
gi 1046878552 815 DVDRRYQSRLQDLKDRLEQSESTNRSMQ 842
Cdd:pfam02463 884 LKDELESKEEKEKEEKKELEEESQKLNL 911
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
221-464 |
3.10e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 221 QKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLR 300
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 301 EQhckelclkVPECARQHRPGRE----RQEDCQDSERLMEqqgaLLKRLAEADSEKARlllllqdkdkEVEELLQEIQce 376
Cdd:COG4942 108 EL--------LRALYRLGRQPPLalllSPEDFLDAVRRLQ----YLKYLAPARREQAE----------ELRADLAELA-- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 377 kaqaktasELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRA 456
Cdd:COG4942 164 --------ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
....*...
gi 1046878552 457 QKERAEKS 464
Cdd:COG4942 236 AAAAAERT 243
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
651-840 |
4.89e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 651 LKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERK---------- 720
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREElgeraralyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 721 -----------LEATSTQ----NVEFLQVIAKREEAIHQAQLRLEEKtrecgslARQLESAIEDARRQVEQTKEQALSKE 785
Cdd:COG3883 98 sggsvsyldvlLGSESFSdfldRLSALSKIADADADLLEELKADKAE-------LEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1046878552 786 RAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRS 840
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
644-835 |
4.90e-04 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 42.71 E-value: 4.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 644 LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEA 723
Cdd:pfam00261 3 MQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAADESERGRKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 724 TSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLesaiedarRQVEQTKEQALSKERAAQSKILDLETQLSRTK 803
Cdd:pfam00261 83 LENRALKDEEKMEILEAQLKEAKEIAEEADRKYEEVARKL--------VVVEGDLERAEERAELAESKIVELEEELKVVG 154
|
170 180 190
....*....|....*....|....*....|....*
gi 1046878552 804 TELGQL---RRTRDDVDRRYQSRLQDLKDRLEQSE 835
Cdd:pfam00261 155 NNLKSLeasEEKASEREDKYEEQIRFLTEKLKEAE 189
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
360-551 |
5.22e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 360 QDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL 439
Cdd:COG4942 19 ADAAAEAEAELEQLQ---QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 440 KQKGDRDKETLKKAIRAQKERAEKSE-------EYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIV 512
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPlalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 1046878552 513 LNDRVTDLVNQQQSLEEKMREdRDSLVERLHRQTAEYSA 551
Cdd:COG4942 176 LEALLAELEEERAALEALKAE-RQKLLARLEKELAELAA 213
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
540-809 |
5.45e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 540 ERLHRQTAEYSAFKLENERlkASFAPMEDKLNQAHLEVQQLKASVKNYEGMID-----NYKSQVMKTRLEADEVAAQLER 614
Cdd:COG5185 256 EKLVEQNTDLRLEKLGENA--ESSKRLNENANNLIKQFENTKEKIAEYTKSIDikkatESLEEQLAAAEAEQELEESKRE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 615 CDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKIT--EAKLAECQDQLqgyERKNIDLTAIISDLRSRIEHQGDK 692
Cdd:COG5185 334 TETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSksSEELDSFKDTI---ESTKESLDEIPQNQRGYAQEILAT 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 693 LElarEKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKRE-EAIHQAQLRLEEKTREcgsLARQLESAIEDAR 771
Cdd:COG5185 411 LE---DTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMrEADEESQSRLEEAYDE---INRSVRSKKEDLN 484
|
250 260 270
....*....|....*....|....*....|....*...
gi 1046878552 772 RQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQL 809
Cdd:COG5185 485 EELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQV 522
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
657-805 |
5.71e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 5.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 657 KLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQ-----NVEF 731
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046878552 732 LQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTE 805
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
156-770 |
6.51e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 6.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 156 MNAVGCLKSEVKMQKGERQMAKRFLEERkeeleevaheLAETEHENTVLRHNIERIKEEKDftmlqkkHLQQEKeclmsk 235
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDK----------IEELEKQLVLANSELTEARTERD-------QFSQES------ 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 236 lveaemdgaaaakqvmalkdtiGKLKTEKQMTCTDINtlTRQKELLLQKLSTFEETNRTLRDLLREQHC-KELCLKVPEC 314
Cdd:pfam15921 373 ----------------------GNLDDQLQKLLADLH--KREKELSLEKEQNKRLWDRDTGNSITIDHLrRELDDRNMEV 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 315 ARQHRPGRERQEDCQDSerlMEQQGALLK----RLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSM 390
Cdd:pfam15921 429 QRLEALLKAMKSECQGQ---MERQMAAIQgkneSLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 391 ESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQ--HKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYA 468
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEgdHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTA 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 469 EQLHVQLADKDLYVAEALSTLESWRsrynqVVKDKGDleLEIIVLNDRVTDLVNQQQSL----EEKMREDRDSLVER--- 541
Cdd:pfam15921 586 GAMQVEKAQLEKEINDRRLELQEFK-----ILKDKKD--AKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERdql 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 542 ----------LHRQTAEYSA----FKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-------MIDNYKSQVMK 600
Cdd:pfam15921 659 lnevktsrneLNSLSEDYEVlkrnFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 601 TRLEADEVAAQLE-------RCDKENKMLKDEMNK-----------------EIEAARRQFQSQLADLQQLPDILKITEA 656
Cdd:pfam15921 739 KRGQIDALQSKIQfleeamtNANKEKHFLKEEKNKlsqelstvateknkmagELEVLRSQERRLKEKVANMEVALDKASL 818
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 657 KLAECQDQLQGYERKNIdltaiisdlRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNV-EFLQVI 735
Cdd:pfam15921 819 QFAECQDIIQRQEQESV---------RLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTaSFLSHH 889
|
650 660 670
....*....|....*....|....*....|....*
gi 1046878552 736 AKREEAIHqaqlrlEEKTRECGSLARQLESAIEDA 770
Cdd:pfam15921 890 SRKTNALK------EDPTRDLKQLLQELRSVINEE 918
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
662-878 |
9.14e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 662 QDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKR--- 738
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERara 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 739 --------------------EEAIHQAQL--RLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLE 796
Cdd:COG3883 95 lyrsggsvsyldvllgsesfSDFLDRLSAlsKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 797 TQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQ----SESTNRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSPIR 872
Cdd:COG3883 175 AQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
|
....*.
gi 1046878552 873 SRSPPA 878
Cdd:COG3883 255 AGAAAG 260
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
638-837 |
9.61e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 9.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 638 QSQLAD-LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDE 716
Cdd:pfam07888 33 QNRLEEcLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 717 LERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTREcgslarqLESAIEDARRQVEQTKEQAlSKERAAQSKILDLE 796
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETE-------LERMKERAKKAGAQRKEEE-AERKQLQAKLQQTE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1046878552 797 TQLSRTKTELGQLRRTRDDVDRRYQsRLQDLKDRLEQSEST 837
Cdd:pfam07888 185 EELRSLSKEFQELRNSLAQRDTQVL-QLQDTITTLTQKLTT 224
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
144-466 |
1.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 144 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERqmAKRFLEERKEELEEVAHEL--AETEHENTVLRHNIERIKEEKDFTMLQ 221
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 222 KKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEK-------QMTCTDINTLTRQKELLLQKLSTFEETNRT 294
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEakkaeeaKIKAEELKKAEEEKKKVEQLKKKEAEEKKK 1648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 295 LRDLLREQhcKELCLKVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEiq 374
Cdd:PTZ00121 1649 AEELKKAE--EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-- 1724
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 375 cEKAQAKTASELSKSMESMRGHLQaQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQlkELKQKGDRDKETLKKAI 454
Cdd:PTZ00121 1725 -EEENKIKAEEAKKEAEEDKKKAE-EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE--ELDEEDEKRRMEVDKKI 1800
|
330
....*....|..
gi 1046878552 455 RAQKERAEKSEE 466
Cdd:PTZ00121 1801 KDIFDNFANIIE 1812
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
190-614 |
1.32e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 190 VAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCT 269
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 270 DINTLTRQKELLL-------QKLSTFEETNRTLRDLLREQHCKELCLKVPECArqhrpgrerqEDCQDSERlmeqqgalL 342
Cdd:PRK02224 406 DLGNAEDFLEELReerdelrEREAELEATLRTARERVEEAEALLEAGKCPECG----------QPVEGSPH--------V 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 343 KRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMEsmrghlqaqlrckeaensrlcmQIKNLERSG 422
Cdd:PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEE----------------------RREDLEELI 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 423 NQHKAEVEAIMEQLKELKQkgdrDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVkd 502
Cdd:PRK02224 526 AERRETIEEKRERAEELRE----RAAELEAEAEEKREAAAEAEEEAEEAREEVAELN----SKLAELKERIESLERIR-- 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 503 kgDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLEN-ERLKASFAPMEDKLNQAHLEVQQL- 580
Cdd:PRK02224 596 --TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELr 673
|
410 420 430
....*....|....*....|....*....|....*.
gi 1046878552 581 --KASVKNYEGMIDNYKSQVMKTRLEADEVAAQLER 614
Cdd:PRK02224 674 eeRDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
290-630 |
1.70e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 290 ETNRTLRDLLREQHCKELCLKVPECARQHRPGR-ERQEDCQDSERLMEQQGAllkRLAEADSEKARLLLLLQDKDKEVEE 368
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARiEEVMKLYEEEKKMKAEEA---KKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 369 LLQEIQCEKaqaKTASELSKSMESMRGHlQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKE 448
Cdd:PTZ00121 1638 LKKKEAEEK---KKAEELKKAEEENKIK-AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE 1713
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 449 TLKKAIRAQKERAEKSEEyAEQLHVQlADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLE 528
Cdd:PTZ00121 1714 EKKKAEELKKAEEENKIK-AEEAKKE-AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 529 EKMREDR---------DSLVERLHRQTAEYSAFK-LENERLKASFAPMEDKLNQAHlEVQQLKASVKNYEGMIDNYKSQV 598
Cdd:PTZ00121 1792 RRMEVDKkikdifdnfANIIEGGKEGNLVINDSKeMEDSAIKEVADSKNMQLEEAD-AFEKHKFNKNNENGEDGNKEADF 1870
|
330 340 350
....*....|....*....|....*....|..
gi 1046878552 599 MKTRLEADEVAAQLERCDKENKMLKDEMNKEI 630
Cdd:PTZ00121 1871 NKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
513-719 |
1.75e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 513 LNDRVTDLvNQQQSLEEKMREDRDSLVERLhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGmid 592
Cdd:PRK09039 58 LNSQIAEL-ADLLSLERQGNQDLQDSVANL---RASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ--- 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 593 nyksqvmktrlEADEVAAQLERcdkenkmlkdeMNKEIEAARRqfqsQLADLQQLpdiLKITEAKLAECQDQlqgyerkn 672
Cdd:PRK09039 131 -----------VSARALAQVEL-----------LNQQIAALRR----QLAALEAA---LDASEKRDRESQAK-------- 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1046878552 673 idltaiISDLRSRIehqgdklelarekhqasqkeNKQLSQKVDELER 719
Cdd:PRK09039 174 ------IADLGRRL--------------------NVALAQRVQELNR 194
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
415-779 |
1.78e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 415 IKNLERSGNQHKAEVEAIMEQLKElkqkgdrdketLKKAIRAQKERAEKSEEYAEqlhvqladkdlyvaEALSTLESWRS 494
Cdd:pfam06160 109 LDELLESEEKNREEVEELKDKYRE-----------LRKTLLANRFSYGPAIDELE--------------KQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 495 RYNQVVKDkGD-LELEIIVLNdrvtdLVNQQQSLEEKMrEDRDSLVERLHrqtaeySAFKLENERLKASFAPMEDKlnQA 573
Cdd:pfam06160 164 QFEELTES-GDyLEAREVLEK-----LEEETDALEELM-EDIPPLYEELK------TELPDQLEELKEGYREMEEE--GY 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 574 HLEVQQLKASVKNYEGMIDNYKSQVmkTRLEADEVAAQLERCDKENKMLKDEMNKEIEaARRQFQSQLA----DLQQLPD 649
Cdd:pfam06160 229 ALEHLNVDKEIQQLEEQLEENLALL--ENLELDEAEEALEEIEERIDQLYDLLEKEVD-AKKYVEKNLPeiedYLEHAEE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 650 ILKITEAKLAECQD-----------------QLQGYERKNIDLTAII-------SDLRSRIEHQGDKLELAREKH----- 700
Cdd:pfam06160 306 QNKELKEELERVQQsytlnenelervrglekQLEELEKRYDEIVERLeekevaySELQEELEEILEQLEEIEEEQeefke 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 701 --QASQKENKQLSQKVDELERKLEAT----STQNV-----EFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIED 769
Cdd:pfam06160 386 slQSLRKDELEAREKLDEFKLELREIkrlvEKSNLpglpeSYLDYFFDVSDEIEDLADELNEVPLNMDEVNRLLDEAQDD 465
|
410
....*....|
gi 1046878552 770 ARRQVEQTKE 779
Cdd:pfam06160 466 VDTLYEKTEE 475
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
186-730 |
4.03e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 186 ELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEmDGAAAAKQVMALKDTIGKLKTEKQ 265
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 266 MTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhcKELCLKVPECarqhrpgRERQEDCQDSERLMEQQGALLKRL 345
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL--KELEKRLEEL-------EERHELYEEAKAKKEELERLKKRL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 346 AEADSEKARLLLLLQDKDK-EVEELLQEIQCEKAQAKT-ASELSKSMESMRGhlqAQLRCKeaensrLCMQIKNLERSGN 423
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKeEIEEEISKITARIGELKKeIKELKKAIEELKK---AKGKCP------VCGRELTEEHRKE 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 424 ---QHKAEVEAIMEQLKELKQKGDRDKETLKK--AIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALStlESWRsRYNQ 498
Cdd:PRK03918 453 lleEYTAELKRIEKELKEIEEKERKLRKELREleKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE--KKAE-EYEK 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 499 VVKDKGDLELEIIVLND---RVTDLVNQQQSLEEKMREDRDSLVErLHRQTAE--YSAFKLENERLKasfapmedKLNQA 573
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKeleKLEELKKKLAELEKKLDELEEELAE-LLKELEElgFESVEELEERLK--------ELEPF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 574 HLEVQQLKASVKNYEGMIDNYKsqvmKTRLEADEVAAQLERCDKENKMLKdemnKEIEAARRQFQSQlaDLQQLPDILKI 653
Cdd:PRK03918 601 YNEYLELKDAEKELEREEKELK----KLEEELDKAFEELAETEKRLEELR----KELEELEKKYSEE--EYEELREEYLE 670
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1046878552 654 TEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQgDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVE 730
Cdd:PRK03918 671 LSRELAGLRAELEELEKRREEIKKTLEKLKEELEER-EKAKKELEKLEKALERVEELREKVKKYKALLKERALSKVG 746
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
322-826 |
4.11e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.86 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 322 RERQEDCQDSERlmeQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASE----LSKSMESMRGHL 397
Cdd:pfam05483 229 EEYKKEINDKEK---QVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhLTKELEDIKMSL 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 398 QAQLRCKEAENSRLCMQIKNLersgNQHKAEVEAIMEQLKELK-------QKGDRDKETLKKAIRAQKERAEKSEEYAEQ 470
Cdd:pfam05483 306 QRSMSTQKALEEDLQIATKTI----CQLTEEKEAQMEELNKAKaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKI 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 471 LHVQLADKDLYVAE----------ALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLV- 539
Cdd:pfam05483 382 ITMELQKKSSELEEmtkfknnkevELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTa 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 540 ----ERLHRQTAEYSAFKLENERLKASfaPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERC 615
Cdd:pfam05483 462 iktsEEHYLKEVEDLKTELEKEKLKNI--ELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENL 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 616 DKENKMLKDEMnkeiEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEL 695
Cdd:pfam05483 540 EEKEMNLRDEL----ESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEE 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 696 AREKHQASQK----ENKQLSQ---KVDELERKLEATSTqnveflqviaKREEAIHQAQLRLEEKTRECGSLARQLESAIE 768
Cdd:pfam05483 613 LHQENKALKKkgsaENKQLNAyeiKVNKLELELASAKQ----------KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKA 682
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1046878552 769 DARRQVEQTKEqalsKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQD 826
Cdd:pfam05483 683 IADEAVKLQKE----IDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQE 736
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
415-737 |
4.90e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 40.81 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 415 IKNLERSGNQHKAEVEAIMEQL----KELKQKGDRDKETLKKAIRAQKERAEKSEEYAeqlhvQLADKDLYVAEAL---S 487
Cdd:TIGR01612 553 AKNWKKLIHEIKKELEEENEDSihleKEIKDLFDKYLEIDDEIIYINKLKLELKEKIK-----NISDKNEYIKKAIdlkK 627
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 488 TLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQqsLEEKMREDRDSLVERLHRQTAEYSafkLENERLKASFAPME 567
Cdd:TIGR01612 628 IIENNNAYIDELAKISPYQVPEHLKNKDKIYSTIKSE--LSKIYEDDIDALYNELSSIVKENA---IDNTEDKAKLDDLK 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 568 DKLNQAHLEVQQLK-ASVKNYEGMIDNYKSQVMKTRLEADEVAAQlERCDKENKMLKDEMNKEieaarRQFQSQLADLQQ 646
Cdd:TIGR01612 703 SKIDKEYDKIQNMEtATVELHLSNIENKKNELLDIIVEIKKHIHG-EINKDLNKILEDFKNKE-----KELSNKINDYAK 776
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 647 LPDILKITEAKLAECQDQLQgyERKNIDLTaiisdlrsriehqgdKLELAREKHQASQKENKQLSQKVDELERKLEATST 726
Cdd:TIGR01612 777 EKDELNKYKSKISEIKNHYN--DQINIDNI---------------KDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKF 839
|
330
....*....|.
gi 1046878552 727 QNVEFLQVIAK 737
Cdd:TIGR01612 840 MKDDFLNKVDK 850
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
455-847 |
4.97e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 455 RAQKERAEKSEEYAEQLHVQLADKDLYVAEaLSTLESWRSRY---NQVVKDKGDLELEIIVLNDRVTDL---VNQQQSLE 528
Cdd:COG3096 781 AAREKRLEELRAERDELAEQYAKASFDVQK-LQRLHQAFSQFvggHLAVAFAPDPEAELAALRQRRSELereLAQHRAQE 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 529 EKMREDRDSLVER---LHRQTAEYSAFKLE--NERLKASFAPMeDKLNQAHLEVQQLKASVKNYEGMIDNYKSqvmkTRL 603
Cdd:COG3096 860 QQLRQQLDQLKEQlqlLNKLLPQANLLADEtlADRLEELREEL-DAAQEAQAFIQQHGKALAQLEPLVAVLQS----DPE 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 604 EADEVAAQLERCDKENKMLKdemnKEIEA-----ARR---------QFQSQLADL-QQLPDILKITEAKLAECQDQLQGY 668
Cdd:COG3096 935 QFEQLQADYLQAKEQQRRLK----QQIFAlsevvQRRphfsyedavGLLGENSDLnEKLRARLEQAEEARREAREQLRQA 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 669 ERKNIDLTAIISDLRSRIEHQGDKL-ELAREKH----QASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIH 743
Cdd:COG3096 1011 QAQYSQYNQVLASLKSSRDAKQQTLqELEQELEelgvQADAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMD 1090
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 744 QAQLRLeektrecgslaRQLESAIEDARRQVEQTKE-----QALSKERaaqskilDLETQLSRTKT------ELGQLRRT 812
Cdd:COG3096 1091 SLQKRL-----------RKAERDYKQEREQVVQAKAgwcavLRLARDN-------DVERRLHRRELaylsadELRSMSDK 1152
|
410 420 430
....*....|....*....|....*....|....*
gi 1046878552 813 RDDVDRRYQSRLQDLKDRLEQSEStNRSMQNYVQF 847
Cdd:COG3096 1153 ALGALRLAVADNEHLRDALRLSED-PRRPERKVQF 1186
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
504-847 |
6.44e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 504 GDLELEIIVLNDR-------VTDLVNQQQSLEEKMREDRD--SLVERLhrqtaEYSAFKLENERLKASFAPMEDKLNQAh 574
Cdd:PRK04863 833 ADPEAELRQLNRRrveleraLADHESQEQQQRSQLEQAKEglSALNRL-----LPRLNLLADETLADRVEEIREQLDEA- 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 575 levQQLKASVKNYEGMIDNYKSQVMKTR--------LEAD--EVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADL 644
Cdd:PRK04863 907 ---EEAKRFVQQHGNALAQLEPIVSVLQsdpeqfeqLKQDyqQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKN 983
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 645 QQLPDIL----KITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKL-ELAREKH----QASQKENKQLSQKVD 715
Cdd:PRK04863 984 SDLNEKLrqrlEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLqELKQELQdlgvPADSGAEERARARRD 1063
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 716 ELERKLEATSTqnveflqviakREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKilDL 795
Cdd:PRK04863 1064 ELHARLSANRS-----------RRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDN--GV 1130
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1046878552 796 ETQLSR------TKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSEsTNRSMQNYVQF 847
Cdd:PRK04863 1131 ERRLHRrelaylSADELRSMSDKALGALRLAVADNEHLRDVLRLSE-DPKRPERKVQF 1187
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
341-726 |
7.50e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 341 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLER 420
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 421 SGNQHKAEVEAIMEQLKELKQK---GDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaealSTLESWRSRYN 497
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAHEARireLEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE-------AERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 498 QVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERlHRQTAeysafklENERLKASFAPMEDKLNQAHLEV 577
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTA-HRKEA-------ENEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 578 QQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK 657
Cdd:pfam07888 254 EGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEER 333
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1046878552 658 LAECQDQLQGYE-----RKNIDLTAIISDLRSRIEHQGDKLELAREKHQAsQKENKQLSQKVDELERKLEATST 726
Cdd:pfam07888 334 LQEERMEREKLEvelgrEKDCNRVQLSESRRELQELKASLRVAQKEKEQL-QAEKQELLEYIRQLEQRLETVAD 406
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
625-835 |
7.62e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 625 EMNKEIEAARRQFQSQLADLQQL-----------------PDILKITEAKLAECQDQLQGYERKNI-----DLTAIISDL 682
Cdd:PRK02224 139 EVNKLINATPSDRQDMIDDLLQLgkleeyrerasdarlgvERVLSDQRGSLDQLKAQIEEKEEKDLherlnGLESELAEL 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 683 RSRIEHQGDKLELARE----------KHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEK 752
Cdd:PRK02224 219 DEEIERYEEQREQAREtrdeadevleEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046878552 753 TRECG---------SLAR--------QLESAIEDARRQVEQTKEQAlskERAAQSkILDLETQLSRTKTELGQLR---RT 812
Cdd:PRK02224 299 LAEAGlddadaeavEARReeledrdeELRDRLEECRVAAQAHNEEA---ESLRED-ADDLEERAEELREEAAELEselEE 374
|
250 260
....*....|....*....|...
gi 1046878552 813 RDDVDRRYQSRLQDLKDRLEQSE 835
Cdd:PRK02224 375 AREAVEDRREEIEELEEEIEELR 397
|
|
| |
