NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1443088279|ref|XP_025882415|]
View 

BEL1-like homeodomain protein 1 isoform X2 [Oryza sativa Japonica Group]

Protein Classification

POX and homeodomain domain-containing protein( domain architecture ID 10758325)

POX and homeodomain domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 464-502 5.95e-16

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


:

Pssm-ID: 428673  Cd Length: 39  Bit Score: 71.39  E-value: 5.95e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1443088279 464 MFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 502
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
POX super family cl02677
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 266-368 2.57e-04

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


The actual alignment was detected with superfamily member pfam07526:

Pssm-ID: 445883  Cd Length: 139  Bit Score: 41.09  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443088279 266 VVSRSAVLaHVAQELLNGFVacllqDVAADAASGVDGGEASQALSSGFSARITTAPTEDASPGSGGARWAAE---AQRL- 341
Cdd:pfam07526   1 VLLRSRYL-KPAQELLDEVV-----SVGGKSIASKSSSSSVSKKEDSEDGGSSQSGGGEGGGGSSSGGGSPSlssAERQe 74

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1443088279 342 --RKLLQL----------CNQCVEEMQSTAARFNSMVRS 368
Cdd:pfam07526  75 lqRKKAKLlsmldevdrrYRQYYDQMQAVVSSFEAVAGL 113
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 464-502 5.95e-16

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 71.39  E-value: 5.95e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1443088279 464 MFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 502
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 446-507 1.48e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.56  E-value: 1.48e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1443088279 446 WRPQRGLPEKSVAVLKAWMFENflrPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWKPM 507
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKN---PYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 457-504 1.40e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 51.10  E-value: 1.40e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1443088279  457 VAVLKAWmFENFlrPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLW 504
Cdd:smart00389  13 LEELEKE-FQKN--PYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 266-368 2.57e-04

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 41.09  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443088279 266 VVSRSAVLaHVAQELLNGFVacllqDVAADAASGVDGGEASQALSSGFSARITTAPTEDASPGSGGARWAAE---AQRL- 341
Cdd:pfam07526   1 VLLRSRYL-KPAQELLDEVV-----SVGGKSIASKSSSSSVSKKEDSEDGGSSQSGGGEGGGGSSSGGGSPSlssAERQe 74

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1443088279 342 --RKLLQL----------CNQCVEEMQSTAARFNSMVRS 368
Cdd:pfam07526  75 lqRKKAKLlsmldevdrrYRQYYDQMQAVVSSFEAVAGL 113
 
Name Accession Description Interval E-value
Homeobox_KN pfam05920
Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to ...
 464-502 5.95e-16

Homeobox KN domain; This is a homeobox transcription factor KN domain conserved from fungi to human and plants. They were first identified as TALE homeobox genes in eukaryotes, (including KNOX and MEIS genes). They have been recently classified.


Pssm-ID: 428673  Cd Length: 39  Bit Score: 71.39  E-value: 5.95e-16
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1443088279 464 MFENFLRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 502
Cdd:pfam05920   1 LYEHLHNPYPSEEEKAELAKETGLSRKQISNWFINARRR 39
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 446-507 1.48e-11

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 59.56  E-value: 1.48e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1443088279 446 WRPQRGLPEKSVAVLKAWMFENflrPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLWKPM 507
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKN---PYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 457-504 1.40e-08

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 51.10  E-value: 1.40e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1443088279  457 VAVLKAWmFENFlrPYPKDSEKDMLAARSGLSRSQVSNWFINARVRLW 504
Cdd:smart00389  13 LEELEKE-FQKN--PYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
POX pfam07526
Associated with HOX; The function of this domain is unknown. It is often found in plant ...
 266-368 2.57e-04

Associated with HOX; The function of this domain is unknown. It is often found in plant proteins associated with pfam00046.


Pssm-ID: 429514  Cd Length: 139  Bit Score: 41.09  E-value: 2.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1443088279 266 VVSRSAVLaHVAQELLNGFVacllqDVAADAASGVDGGEASQALSSGFSARITTAPTEDASPGSGGARWAAE---AQRL- 341
Cdd:pfam07526   1 VLLRSRYL-KPAQELLDEVV-----SVGGKSIASKSSSSSVSKKEDSEDGGSSQSGGGEGGGGSSSGGGSPSlssAERQe 74

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1443088279 342 --RKLLQL----------CNQCVEEMQSTAARFNSMVRS 368
Cdd:pfam07526  75 lqRKKAKLlsmldevdrrYRQYYDQMQAVVSSFEAVAGL 113
Homeodomain pfam00046
Homeodomain;
471-505 2.72e-04

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 39.02  E-value: 2.72e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 1443088279 471 PYPKDSEKDMLAARSGLSRSQVSNWFINARVRlWK 505
Cdd:pfam00046  23 PYPSAEEREELAAQLGLTERQVKVWFQNRRAK-WK 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH