NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1469169503|ref|XP_026091541|]
View 

high choriolytic enzyme 1-like [Carassius auratus]

Protein Classification

ZnMc_hatching_enzyme domain-containing protein( domain architecture ID 10136819)

ZnMc_hatching_enzyme domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
79-261 2.77e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


:

Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 2.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  79 NNIVEVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQTDYISIENRDGCFSSLGRTGGKQVVSLNRQGCVYHGI 158
Cdd:cd04283     1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 159 AQHELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQNTNNQNTPYDYGSIMHYGRTAFSIRyGLETITPIPDRT 238
Cdd:cd04283    81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSIN-GKPTIVPIPDPN 159
                         170       180
                  ....*....|....*....|...
gi 1469169503 239 VEIGQRQGMSNIDILRINKLYGC 261
Cdd:cd04283   160 VPIGQRQGMSNLDILRINKLYNC 182
 
Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
79-261 2.77e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 2.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  79 NNIVEVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQTDYISIENRDGCFSSLGRTGGKQVVSLNRQGCVYHGI 158
Cdd:cd04283     1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 159 AQHELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQNTNNQNTPYDYGSIMHYGRTAFSIRyGLETITPIPDRT 238
Cdd:cd04283    81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSIN-GKPTIVPIPDPN 159
                         170       180
                  ....*....|....*....|...
gi 1469169503 239 VEIGQRQGMSNIDILRINKLYGC 261
Cdd:cd04283   160 VPIGQRQGMSNLDILRINKLYNC 182
Astacin pfam01400
Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. ...
83-261 2.99e-78

Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as Swiss:P13497, and Tolloid from drosophila.


Pssm-ID: 426242 [Multi-domain]  Cd Length: 192  Bit Score: 234.48  E-value: 2.99e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  83 EVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQ--TDYISIENRDGCFSSLGRTGGKQVVSLNRqGCVYHGIAQ 160
Cdd:pfam01400   7 PIPYVIDGSLTGLARALIRQAMRHWENKTCIRFVERTPApdNNYLFFFKGDGCYSYVGRVGGRQPVSIGD-GCDKFGIIV 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 161 HELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQN---TNNQNTPYDYGSIMHYGRTAFSIRYGLETITPI-PD 236
Cdd:pfam01400  86 HELGHALGFFHEQSRPDRDDYVSINWDNIDPGQEGNFDKYDpseVDSYGVPYDYGSIMHYGPNAFSKNGSLPTIVPKdND 165
                         170       180
                  ....*....|....*....|....*
gi 1469169503 237 RTVEIGQRQGMSNIDILRINKLYGC 261
Cdd:pfam01400 166 YQATIGQRVKLSFYDIKKINKLYKC 190
ZnMc smart00235
Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a ...
70-213 4.38e-45

Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.


Pssm-ID: 214576 [Multi-domain]  Cd Length: 139  Bit Score: 148.27  E-value: 4.38e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503   70 NNCFWKKNsnnivEVPY-IVSSEFSSNEKSVITNAMSTFHSKTCIRFVPR-STQTDYISIENRD-GCF-SSLGRTGGKQV 145
Cdd:smart00235   1 GSKKWPKG-----TVPYvIDSSSLSPEEREAIAKALAEWSDVTCIRFVERtGTADIYISFGSGDsGCTlSHAGRPGGDQH 75
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469169503  146 VSLNRqGCVYHGIAQHELNHALGFYHEQTRSDRDQYVRINFENIspdMAYNFQKQNTNNQNTPYDYGS 213
Cdd:smart00235  76 LSLGN-GCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI---DTRNFDLSEDDSLGIPYDYGS 139
 
Name Accession Description Interval E-value
ZnMc_hatching_enzyme cd04283
Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted ...
79-261 2.77e-125

Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.


Pssm-ID: 239810 [Multi-domain]  Cd Length: 182  Bit Score: 353.49  E-value: 2.77e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  79 NNIVEVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQTDYISIENRDGCFSSLGRTGGKQVVSLNRQGCVYHGI 158
Cdd:cd04283     1 NGIVYVPYVISPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIESRSGCWSYIGRQGGRQTVSLQKQGCMYKGI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 159 AQHELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQNTNNQNTPYDYGSIMHYGRTAFSIRyGLETITPIPDRT 238
Cdd:cd04283    81 IQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNLGTPYDYSSVMHYGRYAFSIN-GKPTIVPIPDPN 159
                         170       180
                  ....*....|....*....|...
gi 1469169503 239 VEIGQRQGMSNIDILRINKLYGC 261
Cdd:cd04283   160 VPIGQRQGMSNLDILRINKLYNC 182
ZnMc_astacin_like cd04280
Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of ...
84-259 3.83e-92

Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.


Pssm-ID: 239807 [Multi-domain]  Cd Length: 180  Bit Score: 269.44  E-value: 3.83e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  84 VPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQTDYISIENRDGCFSSLGRTGGKQVVSLNRqGCVYHGIAQHEL 163
Cdd:cd04280     4 VPYVIDGSFDESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVKGSGCWSYVGRVGGRQVVSLGS-GCFSLGTIVHEL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 164 NHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQN---TNNQNTPYDYGSIMHYGRTAFSIRyGLETITPIPDRTVE 240
Cdd:cd04280    83 MHALGFYHEQSRPDRDDYVTINWENIQPGYEHNFDKYSpdtVTTYGVPYDYGSVMHYGPTAFSKN-GKPTIVPKDPGYQI 161
                         170
                  ....*....|....*....
gi 1469169503 241 IGQRQGMSNIDILRINKLY 259
Cdd:cd04280   162 IGQREGLSFLDIKKINKMY 180
Astacin pfam01400
Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. ...
83-261 2.99e-78

Astacin (Peptidase family M12A); The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as Swiss:P13497, and Tolloid from drosophila.


Pssm-ID: 426242 [Multi-domain]  Cd Length: 192  Bit Score: 234.48  E-value: 2.99e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  83 EVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQ--TDYISIENRDGCFSSLGRTGGKQVVSLNRqGCVYHGIAQ 160
Cdd:pfam01400   7 PIPYVIDGSLTGLARALIRQAMRHWENKTCIRFVERTPApdNNYLFFFKGDGCYSYVGRVGGRQPVSIGD-GCDKFGIIV 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 161 HELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQKQN---TNNQNTPYDYGSIMHYGRTAFSIRYGLETITPI-PD 236
Cdd:pfam01400  86 HELGHALGFFHEQSRPDRDDYVSINWDNIDPGQEGNFDKYDpseVDSYGVPYDYGSIMHYGPNAFSKNGSLPTIVPKdND 165
                         170       180
                  ....*....|....*....|....*
gi 1469169503 237 RTVEIGQRQGMSNIDILRINKLYGC 261
Cdd:pfam01400 166 YQATIGQRVKLSFYDIKKINKLYKC 190
ZnMc_meprin cd04282
Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted ...
40-261 9.52e-56

Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.


Pssm-ID: 239809 [Multi-domain]  Cd Length: 230  Bit Score: 178.82  E-value: 9.52e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  40 ILESNNGSSEVLIEGDLVFPKT--RNALycFNNNCFWKknsnniVEVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVP 117
Cdd:cd04282    12 IFEINLGAGLDLFEGDILLDEGqsRNGL--IGDTYRWP------FPIPYILDDSLDLNAKGVILKAFEMYRLKSCVDFKP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 118 RSTQTDYISIENRDGCFSSLGRTGGKQVVSLNrQGCVYHGIAQHELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNF 197
Cdd:cd04282    84 YEGESNYIFFFKGSGCWSMVGDQQGGQNLSIG-AGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQILSGREHNF 162
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469169503 198 QKQN---TNNQNTPYDYGSIMHYGRTAFSIRYGLETI-TPIPDRTVEIGQRQGMSNIDILRINKLYGC 261
Cdd:cd04282   163 NKYDdsfSTDLNTPYDYESVMHYSPFSFNKGASEPTItTKIPEFNDIIGQRLDFSDIDLERLNRMYNC 230
ZnMc_BMP1_TLD cd04281
Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) ...
84-261 2.04e-52

Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.


Pssm-ID: 239808 [Multi-domain]  Cd Length: 200  Bit Score: 169.16  E-value: 2.04e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  84 VPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPRSTQTDYISIENRD-GCFSSLGRTG-GKQVVSLNRQgCVYHGIAQH 161
Cdd:cd04281    15 IPYVIDGNFTGSQRAMFKQAMRHWENFTCVTFVERTPEENYIVFTYRPcGCCSYVGRRGnGPQAISIGKN-CDKFGIVVH 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 162 ELNHALGFYHEQTRSDRDQYVRINFENISPDMAYNFQK---QNTNNQNTPYDYGSIMHYGRTAFSIRYGLETITPIPDRT 238
Cdd:cd04281    94 ELGHVIGFWHEHTRPDRDDHVTIIRENIQPGQEYNFLKmepEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPN 173
                         170       180
                  ....*....|....*....|....*.
gi 1469169503 239 ---VEIGQRQGMSNIDILRINKLYGC 261
Cdd:cd04281   174 gvrPEIGQRTRLSEGDIIQANKLYKC 199
ZnMc smart00235
Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a ...
70-213 4.38e-45

Zinc-dependent metalloprotease; Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.


Pssm-ID: 214576 [Multi-domain]  Cd Length: 139  Bit Score: 148.27  E-value: 4.38e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503   70 NNCFWKKNsnnivEVPY-IVSSEFSSNEKSVITNAMSTFHSKTCIRFVPR-STQTDYISIENRD-GCF-SSLGRTGGKQV 145
Cdd:smart00235   1 GSKKWPKG-----TVPYvIDSSSLSPEEREAIAKALAEWSDVTCIRFVERtGTADIYISFGSGDsGCTlSHAGRPGGDQH 75
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1469169503  146 VSLNRqGCVYHGIAQHELNHALGFYHEQTRSDRDQYVRINFENIspdMAYNFQKQNTNNQNTPYDYGS 213
Cdd:smart00235  76 LSLGN-GCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI---DTRNFDLSEDDSLGIPYDYGS 139
ZnMc cd00203
Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major ...
82-259 1.06e-24

Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.


Pssm-ID: 238124 [Multi-domain]  Cd Length: 167  Bit Score: 96.44  E-value: 1.06e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  82 VEVPYIV--------SSEFSSNEKSVITNAMSTFHSKTCIRFVPRST--QTDYISIEN-------RDGCFSSLGRT--GG 142
Cdd:cd00203     1 KVIPYVVvaddrdveEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVeiDKADIAILVtrqdfdgGTGGWAYLGRVcdSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 143 KQVVSLNRQGCV---YHGIAQHELNHALGFYHEQTRSDRDQYVRInfenispdmaynfqkqNTNNQNTPYDYGSIMHYGR 219
Cdd:cd00203    81 RGVGVLQDNQSGtkeGAQTIAHELGHALGFYHDHDRKDRDDYPTI----------------DDTLNAEDDDYYSVMSYTK 144
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1469169503 220 TAFSirygletitpipdrtveIGQRQGMSNIDILRINKLY 259
Cdd:cd00203   145 GSFS-----------------DGQRKDFSQCDIDQINKLY 167
ZnMc_MMP_like cd04268
Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix ...
83-259 1.70e-18

Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.


Pssm-ID: 239796 [Multi-domain]  Cd Length: 165  Bit Score: 79.85  E-value: 1.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503  83 EVPYIVSSEFSSNEKSVITNAMSTFHSKTCIRFVPR---STQTDYIS----IENRDGCFSSLGRT--GGKQVVSLNRQGC 153
Cdd:cd04268     3 PITYYIDDSVPDKLRAAILDAIEAWNKAFAIGFKNAndvDPADIRYSvirwIPYNDGTWSYGPSQvdPLTGEILLARVYL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1469169503 154 ----------VYHGIAQHELNHALGFYHEQTRSDRDQYVRINfenispdmaynfqkqntnnqNTPYDYGSIMHYGRTAFS 223
Cdd:cd04268    83 yssfveysgaRLRNTAEHELGHALGLRHNFAASDRDDNVDLL--------------------AEKGDTSSVMDYAPSNFS 142
                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 1469169503 224 IRYGletitpipdrtveIGQRQGMSNIDILRINKLY 259
Cdd:cd04268   143 IQLG-------------DGQKYTIGPYDIAAIKKLY 165
ZnMc_MMP_like_3 cd04327
Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal ...
161-217 1.90e-04

Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.


Pssm-ID: 239819 [Multi-domain]  Cd Length: 198  Bit Score: 41.21  E-value: 1.90e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1469169503 161 HELNHALGFYHEQTRSDRDqyVRINFENIspdMAYNFQKQN-----TNNQN------------TPYDYGSIMHY 217
Cdd:cd04327    98 HEFGHALGFIHEHQSPAAN--IPWDKEAV---YAYFSGPPNwdretVINHNvfaklddgdvaySPYDPDSIMHY 166
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH