|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
532-1112 |
1.12e-20 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 98.86 E-value: 1.12e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 532 LATKIRGHNRELSEASVQSntsdESQGSENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESL----- 606
Cdd:COG1196 230 LLLKLRELEAELEELEAEL----EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdia 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 607 MAKHEGGDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLA 685
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 686 RQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLL 765
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 766 DDTTHKLEGSRASLEGARRELNELQrssaelARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESV 845
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAA------ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 846 RAELQESREALAAQEGARAPADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERsLAIAVEREQISREECVALQ 925
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA-AVDLVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 926 QRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTE 1005
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1006 KKRNAILQEQVSVRCERgdvspsqsvisdslsASLWHSEEGRTTPTGSALcVEDTLAQLTRRDGELRALALQRDSLLAER 1085
Cdd:COG1196 699 LLAEEEEERELAEAEEE---------------RLEEELEEEALEEQLEAE-REELLEELLEEEELLEEEALEELPEPPDL 762
|
570 580 590
....*....|....*....|....*....|....*...
gi 1496288037 1086 DTLRQHRARLQ-----------AALDDHQTLQEQYDAL 1112
Cdd:COG1196 763 EELERELERLEreiealgpvnlLAIEEYEELEERYDFL 800
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
566-1144 |
1.37e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 95.00 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 566 RRLCEMAELLEAREnRLLEMSRSNADLAESNADLKGQVESLmakheggdintitEDYTQRMSALEKKFQQAIREKDQLRK 645
Cdd:COG1196 216 RELKEELKELEAEL-LLLKLRELEAELEELEAELEELEAEL-------------EELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 646 QLDSLKAESSSRKNS-SELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELD 724
Cdd:COG1196 282 ELEEAQAEEYELLAElARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 725 RLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQ 804
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 805 QAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQE--SREALAAQEGARAPADTAAVLrqlAQLQHAA 882
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEaaARLLLLLEAEADYEGFLEGVK---AALLLAG 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 883 LRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSsvRDQLQRLSGTEEQHLQAIRRLEGD 962
Cdd:COG1196 519 LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG--RATFLPLDKIRARAALAAALARGA 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 963 LASKTSELESMCAEHAAQLSSLRtahAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWH 1042
Cdd:COG1196 597 IGAAVDLVASDLREADARYYVLG---DTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1043 SEEGRTTPTGSALCVE----DTLAQLTRRDGELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGE 1118
Cdd:COG1196 674 LLEAEAELEELAERLAeeelELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
570 580
....*....|....*....|....*.
gi 1496288037 1119 KEEQMAELRLDLQDVTQLYKAQLDEL 1144
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
615-1153 |
2.01e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 91.54 E-value: 2.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 615 INTITEDYTQRMSALEK------KFQQAIREKDQLRKQLDSLK---AESSSRKNSSELENSLKEKDEVIAQLQEEGEKLA 685
Cdd:COG1196 191 LEDILGELERQLEPLERqaekaeRYRELKEELKELEAELLLLKlreLEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 686 RQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEavyrLTTANKKLETELIETKSLL 765
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEEEL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 766 DDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEkkwvsryESV 845
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL-------ERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 846 RAELQESREALAAQEGARAPADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREEcvALQ 925
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 926 QRLADVDQQLSSVR-----DQLQRLSGTEEQHLQAIRRLEGDLAS-----------KTSELESMCAEHAAQLSSLRTAHA 989
Cdd:COG1196 498 EAEADYEGFLEGVKaalllAGLRGLAGAVAVLIGVEAAYEAALEAalaaalqnivvEDDEVAAAAIEYLKAAKAGRATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 990 QLEAqlADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDG 1069
Cdd:COG1196 578 PLDK--IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1070 ELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQ 1149
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
....
gi 1496288037 1150 AAQR 1153
Cdd:COG1196 736 ELLE 739
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
661-734 |
2.96e-15 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 71.57 E-value: 2.96e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 661 SELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKE 734
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
620-935 |
2.08e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 620 EDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQhsniikkL 698
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEElEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ-------L 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 699 RAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRAS 778
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 779 LEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAA 858
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288037 859 QEGARAPADTaavlrqlaQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQL 935
Cdd:TIGR02168 913 LRRELEELRE--------KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
564-1153 |
1.09e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 1.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 564 LMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLMAKH-----EGGDINTITEDYTQRMSALEKKFQQAIR 638
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVseleeEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 639 EKDQLRKQLDSLKAEsssrknsseLENSLKEKDEVIAQLQEEGEKLARQQlqhsNIIKKLRAKDKDNEQVIKGLRDKIAE 718
Cdd:TIGR02168 310 RLANLERQLEELEAQ---------LEELESKLDELAEELAELEEKLEELK----EELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 719 QTTELDRLKRSIA-AKEELEVNQIEAVY---RLTTANKKLETELIETKSLLDD-TTHKLEGSRASLEGARRELNELQ--- 790
Cdd:TIGR02168 377 LEEQLETLRSKVAqLELQIASLNNEIERleaRLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQeel 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 791 -RSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEE------------KKWVSRYESVRAELQESRE--- 854
Cdd:TIGR02168 457 eRLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallknQSGLSGILGVLSELISVDEgye 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 855 -ALAAQEGARAPA-----DTAAVLRQLAQLQHAALRSA----TAHSHALRQKD--LALAEVERSLAIAVEREQISREECV 922
Cdd:TIGR02168 537 aAIEAALGGRLQAvvvenLNAAKKAIAFLKQNELGRVTflplDSIKGTEIQGNdrEILKNIEGFLGVAKDLVKFDPKLRK 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 923 ALQQRLADVdqqlsSVRDQLQ---RLSGtEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLAD-E 998
Cdd:TIGR02168 617 ALSYLLGGV-----LVVDDLDnalELAK-KLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEElE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 999 KNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQR 1078
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288037 1079 DSLLAERDTLRQHRARLQAALddhQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQR 1153
Cdd:TIGR02168 771 EEAEEELAEAEAEIEELEAQI---EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
|
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
1062-1144 |
3.27e-11 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 61.41 E-value: 3.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1062 AQLTRRDGELRALALQRDSLLAERDTLRQH--------------RARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELR 1127
Cdd:pfam12325 19 STIRRLEGELASLKEELARLEAQRDEARQEivklmkeneelkelKKELEELEKELKELEQRYETTLELLGEKSEEVEELK 98
|
90
....*....|....*..
gi 1496288037 1128 LDLQDVTQLYKAQLDEL 1144
Cdd:pfam12325 99 ADVEDLKEMYREQVQQL 115
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
695-1017 |
4.09e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.79 E-value: 4.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 695 IKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIE----AVYRLTTANKKLETELIETKSLLDDTTH 770
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 771 KLEGSRASLEGARRELNELQRSSAELARRAagHQQAQDQQRAADEELARLRAELQQLRA----------DMVNEEKKWVS 840
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKI--KDLGEEEQLRVKEKIGELEAEIASLERsiaekereleDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 841 RYESVRAELQESREALAAQEgarapadtaavlRQLAQLQhAALRSATAHSHALRQKdlaLAEVERSLAIAVEREQISREE 920
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEER------------KRRDKLT-EEYAELKEELEDLRAE---LEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 921 CVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQ---LSSLRTAHAQLEAQLAD 997
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQewkLEQLAADLSKYEQELYD 473
|
330 340
....*....|....*....|
gi 1496288037 998 EKNALDTEKKRNAILQEQVS 1017
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELA 493
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
530-1127 |
1.36e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.83 E-value: 1.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 530 KSLATKIRGHNRELSEASVQSNTSDEsqgsENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNAdlkgqveslmak 609
Cdd:PRK02224 202 KDLHERLNGLESELAELDEEIERYEE----QREQARETRDEADEVLEEHEERREELETLEAEIEDLRE------------ 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 610 heggdinTITEDYTQRmSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNSSE-LENSLKEKDEVIAQLQEEGEKLARQQ 688
Cdd:PRK02224 266 -------TIAETERER-EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEaVEARREELEDRDEELRDRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 689 LQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAK--------EELEVNQiEAVYRLTTANKKLETELIE 760
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRreeieeleEEIEELR-ERFGDAPVDLGNAEDFLEE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 761 TKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEkkwvs 840
Cdd:PRK02224 417 LREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEV----- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 841 ryESVRAELQESREALAAQEGARAPADTAAVLRQLAQLQHAalrSATAHSHALRQKDLALAEVERSLAIAVEREQISREE 920
Cdd:PRK02224 492 --EEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE---TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 921 CVALQQRLADVDQQLSSVRDQLQRLSGTEEQhLQAIRRLE---GDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLAD 997
Cdd:PRK02224 567 AEEAREEVAELNSKLAELKERIESLERIRTL-LAAIADAEdeiERLREKREALAELNDERRERLAEKRERKRELEAEFDE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 998 EKNALDTEKKRNAilqeqvsvrcergdvspsqsvisdslsaslwhseegrttptgsalcvEDTLAQLtrrDGELRALALQ 1077
Cdd:PRK02224 646 ARIEEAREDKERA-----------------------------------------------EEYLEQV---EEKLDELREE 675
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1078 RDSL----------LAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEeqmAELR 1127
Cdd:PRK02224 676 RDDLqaeigaveneLEELEELRERREALENRVEALEALYDEAEELESMYGDLR---AELR 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
574-1013 |
1.60e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 65.17 E-value: 1.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 574 LLEARENRLLEMSRSNADLAESN----ADLKGQVESLMAKHEggDINTITED---YTQRMSALEKKFQQAIREKDQLRKQ 646
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNlkelKELEEELKEAEEKEE--EYAELQEEleeLEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 647 LDSLKAESSSRKNSSELE------NSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKD--------KDNEQVIKGL 712
Cdd:COG4717 125 LQLLPLYQELEALEAELAelperlEELEERLEELRELEEELEELEAELAELQEELEELLEQLslateeelQDLAEELEEL 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 713 RDKIAEQTTELDRLKRSIAAKEElEVNQIEAVYRLTTANKKLETELIETKSLldDTTHKLEGSRASLEGARRELNELQRS 792
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEE-ELEQLENELEAAALEERLKEARLLLLIA--AALLALLGLGGSLLSLILTIAGVLFL 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 793 SAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEekkWVSRYesvraELQESREALAAQEGARAPADTAAVL 872
Cdd:COG4717 282 VLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE---LLAAL-----GLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 873 RQLAQLQHAALRsatAHSHALRQKDLALAEVErSLAIAVEREQISrEECVALQQRLADVDQQLSSVRDQLQRLS--GTEE 950
Cdd:COG4717 354 REAEELEEELQL---EELEQEIAALLAEAGVE-DEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLeaLDEE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 951 QHLQAIRRLEGDLASKTSELESM---CAEHAAQLSSLRTAH--AQLEAQLADEKNALDTEKKRNAILQ 1013
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELreeLAELEAELEQLEEDGelAELLQELEELKAELRELAEEWAALK 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
641-1129 |
4.14e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 4.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 641 DQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQhsNIIKKLRAKDKDNEQVIKGLRDKIAEQT 720
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE--AELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 721 TELDRLKRSIAA-----KEELEvNQIEavyRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNE-LQRSSA 794
Cdd:COG4913 323 EELDELEAQIRGnggdrLEQLE-REIE---RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAAlLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 795 ELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNeekkwvsryesVRAELQESREALAAQEGARA---------- 864
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSN-----------IPARLLALRDALAEALGLDEaelpfvgeli 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 865 ---------------------------PADTAAVLRQLAQLqHAALRSATAHSHALRQKDLALAEVERSLA--IAVE--- 912
Cdd:COG4913 468 evrpeeerwrgaiervlggfaltllvpPEHYAAALRWVNRL-HLRGRLVYERVRTGLPDPERPRLDPDSLAgkLDFKphp 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 913 -----REQISRE---ECVALQQRLADVDQQLSsvRDQLQRLSGTEEQH--LQAIRR---LEGDLASKTSELEsmcaehaA 979
Cdd:COG4913 547 frawlEAELGRRfdyVCVDSPEELRRHPRAIT--RAGQVKGNGTRHEKddRRRIRSryvLGFDNRAKLAALE-------A 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 980 QLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDslsaslwhseegrttptgsalcVED 1059
Cdd:COG4913 618 ELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAE----------------------LEA 675
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288037 1060 TLAQLTRRDGELRALALQRDSLLAERDTLRQHR-------ARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLD 1129
Cdd:COG4913 676 ELERLDASSDDLAALEEQLEELEAELEELEEELdelkgeiGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE 752
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
657-1003 |
3.09e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 3.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 657 RKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEEL 736
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 737 EVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQrssaelarraaghqqaqdqqraadEE 816
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR------------------------AE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 817 LARLRAELQQLRADMVNEEKkwvsRYESVRAELQESREALAAQEGARAPAdtAAVLRQLAQLQHAALRSATAHSHALRQK 896
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLER----RIAATERRLEDLEEQIEELSEDIESL--AAEIEELEELIEELESELEALLNERASL 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 897 DLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRrlegdlasktsELESMCAE 976
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS-----------EEYSLTLE 954
|
330 340
....*....|....*....|....*...
gi 1496288037 977 HAAQLSSLRTAH-AQLEAQLADEKNALD 1003
Cdd:TIGR02168 955 EAEALENKIEDDeEEARRRLKRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
628-859 |
3.87e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 3.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 628 ALEKKFQQAIREKDQLRKQLDSLKAESSSRKN-SSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNE 706
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 707 QVIKGLRDKIAEQTTELDRLKRSIAaKEELEVNQIEAVYR------LTTANKKLETELIETKSLLDDTTHKLEGSRASLE 780
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLH-KLEEALNDLEARLShsripeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 781 GARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQ----QLRADMVNEEKKwVSRYESVRAELQESREAL 856
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrDLESRLGDLKKE-RDELEAQLRELERKIEEL 908
|
...
gi 1496288037 857 AAQ 859
Cdd:TIGR02169 909 EAQ 911
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
639-879 |
3.91e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 639 EKDQLRKQLDSLKAEsssrknsselensLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAE 718
Cdd:COG4942 21 AAAEAEAELEQLQQE-------------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 719 QTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLE----TELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSA 794
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 795 ELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGARAPADTAAVLRQ 874
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
....*
gi 1496288037 875 LAQLQ 879
Cdd:COG4942 248 FAALK 252
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
620-1109 |
4.10e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 620 EDYTQRMSALEKKF-QQAIREKDQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKL 698
Cdd:COG4717 49 ERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 699 rakdkDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRAS 778
Cdd:COG4717 129 -----PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 779 LEGARREL-NELQRSSAELARRaaghqqaqdqqraaDEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALA 857
Cdd:COG4717 204 LQQRLAELeEELEEAQEELEEL--------------EEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 858 AQEGARAPADTAAV------LRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADV 931
Cdd:COG4717 270 SLILTIAGVLFLVLgllallFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 932 DQQLSSVRDQLQRLsgTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLAdeknALDTEKKRNAI 1011
Cdd:COG4717 350 QELLREAEELEEEL--QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE----ELLGELEELLE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1012 LQEQVSVRCERGDVSPSQSVISDSLSAslWHSEEGRttptgsalcVEDTLAQLtRRDGELRALALQRDSLLAERDTLRQH 1091
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEEELEE--LREELAE---------LEAELEQL-EEDGELAELLQELEELKAELRELAEE 491
|
490
....*....|....*...
gi 1496288037 1092 RARLQAALDDHQTLQEQY 1109
Cdd:COG4717 492 WAALKLALELLEEAREEY 509
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
628-829 |
4.12e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 4.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 628 ALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNE 706
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKElAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 707 QVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYR-------LTTANKKLETELIETKSLLDDTTHKLEGSRASL 779
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRrlqylkyLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1496288037 780 EGARRELNELQRS-SAELARRAAGHQQAQDQQRAADEELARLRAELQQLRA 829
Cdd:COG4942 177 EALLAELEEERAAlEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
716-1153 |
6.14e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 6.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 716 IAEQTTELDRLKRSIAAKEELEvnQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRssae 795
Cdd:COG4913 257 IRELAERYAAARERLAELEYLR--AALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEA---- 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 796 lARRAAGHqqaqdqqraadEELARLRAELQQLRADMVNEEKKWvSRYEsvraelqesreALAAQEGARAPADTAAVLRQL 875
Cdd:COG4913 331 -QIRGNGG-----------DRLEQLEREIERLERELEERERRR-ARLE-----------ALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 876 AQLQhAALRSATAHSHALRQkdlALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQ- 954
Cdd:COG4913 387 AEAA-ALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELPf 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 955 ----------------AIRRL-----------EGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEK---NALDT 1004
Cdd:COG4913 463 vgelievrpeeerwrgAIERVlggfaltllvpPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDslaGKLDF 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1005 EKKR-----NAILQEQVSVRC-------ERGDVSPSQS-VISDSLSAslwHSEEGRTTPTGSALCVEDTLAQLTRRDGEL 1071
Cdd:COG4913 543 KPHPfrawlEAELGRRFDYVCvdspeelRRHPRAITRAgQVKGNGTR---HEKDDRRRIRSRYVLGFDNRAKLAALEAEL 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1072 RALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQY------DALLQMYGEKEEQMAELRLDLQDVTQLyKAQLDELI 1145
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDLAAL-EEQLEELE 698
|
....*...
gi 1496288037 1146 ALKQAAQR 1153
Cdd:COG4913 699 AELEELEE 706
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
638-1148 |
8.50e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 8.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 638 REKDQLRKQLDSLKAESSSRKNSS------ELENSLKEKDEVIAQLQEEGEKlARQQLQHSNII----KKLRAKDKDNEQ 707
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEKDlherlnGLESELAELDEEIERYEEQREQ-ARETRDEADEVleehEERREELETLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 708 VIKGLRDKIAEQTTELDRLKRSIAAKEElEVNQIEAVYRLTTANKKLETELIETKSL-LDDTTHKLEGSRASLEGARREL 786
Cdd:PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRE-RLEELEEERDDLLAEAGLDDADAEAVEArREELEDRDEELRDRLEECRVAA 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 787 NELqRSSAELARRAAghQQAQDQQRAADEELARLRAELQQLRADMVNEEkkwvSRYESVRAELQESREALaaqEGARAPA 866
Cdd:PRK02224 338 QAH-NEEAESLREDA--DDLEERAEELREEAAELESELEEAREAVEDRR----EEIEELEEEIEELRERF---GDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 867 DTAAVLRQLAQLQHAALRSATAHSHA-LRQKDLALAEVERSLAIA--------------VEREQISREECVALQQRLADV 931
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEAtLRTARERVEEAEALLEAGkcpecgqpvegsphVETIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 932 DQQLSSVRDQLQRLSGTEEQHLQAIRRLE--GDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQlADEKNALDTEKKRN 1009
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERLEErrEDLEELIAERRETIEEKRERAEELRERAAELEAE-AEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1010 AilqeqVSVRCERGDVSPSQSVISDSLsaslwhseEGRTTPTGSALCVEDTLAQLTRRDGELRALA----LQRDSLLAER 1085
Cdd:PRK02224 567 A-----EEAREEVAELNSKLAELKERI--------ESLERIRTLLAAIADAEDEIERLREKREALAelndERRERLAEKR 633
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 1086 DTLRQHRARLQ-AALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALK 1148
Cdd:PRK02224 634 ERKRELEAEFDeARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
776-1150 |
9.33e-09 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.97 E-value: 9.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 776 RASLEGARRELNELQRSSAELARRAaghqqaqdqqraadEELARLRAELQQlradmvneekkwvsRYESVRAELQESREA 855
Cdd:PRK04863 292 RRELYTSRRQLAAEQYRLVEMAREL--------------AELNEAESDLEQ--------------DYQAASDHLNLVQTA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 856 LAAQE-GARAPADTAAVLRQLAQLQhaalrsatahshalrqkdLALAEVERSLAIAVEREQISREECVALQQRLADVDQQ 934
Cdd:PRK04863 344 LRQQEkIERYQADLEELEERLEEQN------------------EVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 935 LssvrDQLQRLSGTEEQHLQAIRRLEG--DLASKTSE-LESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAI 1011
Cdd:PRK04863 406 L----DVQQTRAIQYQQAVQALERAKQlcGLPDLTADnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1012 LQEQVsvrcerGDVSPSQsvisdslsASLWHSEEGRTTPTGSALcvEDTLAQLTRRDGEL-RALALQRDSLLAERDTLRQ 1090
Cdd:PRK04863 482 VRKIA------GEVSRSE--------AWDVARELLRRLREQRHL--AEQLQQLRMRLSELeQRLRQQQRAERLLAEFCKR 545
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1091 HRARLQAAlDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQA 1150
Cdd:PRK04863 546 LGKNLDDE-DELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPA 604
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
754-1017 |
4.05e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 754 LETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVN 833
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 834 EEKKWVSRYESVRAELQESREALAAQEgarapadtaavlrqlAQLQHAALRSATAHSHALRQK----DLALAEVERSLAI 909
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLE---------------ARLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 910 AVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEG---DLASKTSELESMCAEHAAQLSSLRT 986
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAalrDLESRLGDLKKERDELEAQLRELER 903
|
250 260 270
....*....|....*....|....*....|.
gi 1496288037 987 AHAQLEAQLADEKNALDTEKKRNAILQEQVS 1017
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEEELS 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
540-1144 |
4.81e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 540 NRELSEASVQSNTSDEsqgsENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLMAKHEggDINTIT 619
Cdd:TIGR02168 252 EEELEELTAELQELEE----KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE--ELEAQL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 620 EDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKL 698
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAElEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 699 RAKDKDNEQVIKGLRDKIAE-----QTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLE 773
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEEllkklEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 774 GSRA---SLEGARRELNELQRSSAEL---ARRAAGHQQAQDQQRAADEEL-----ARLRAELQQLRADMVNEEKKWVSRY 842
Cdd:TIGR02168 486 QLQArldSLERLQENLEGFSEGVKALlknQSGLSGILGVLSELISVDEGYeaaieAALGGRLQAVVVENLNAAKKAIAFL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 843 ESVR--------------AELQES-REALAAQEGARAPA-------------------------DTAAVLRQLAQLQHAA 882
Cdd:TIGR02168 566 KQNElgrvtflpldsikgTEIQGNdREILKNIEGFLGVAkdlvkfdpklrkalsyllggvlvvdDLDNALELAKKLRPGY 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 883 L-----------------RSATAHSHAL---------RQKDLALAEVERSLAIAVE--REQIS--REECVALQQRLADVD 932
Cdd:TIGR02168 646 RivtldgdlvrpggvitgGSAKTNSSILerrreieelEEKIEELEEKIAELEKALAelRKELEelEEELEQLRKELEELS 725
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 933 QQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKT---SELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRN 1009
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELEaeiEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1010 AILQEQVS-----VRCERGDVSPSQSVISD--------------------SLSASLWHSEEGRTTptgsalcVEDTLAQL 1064
Cdd:TIGR02168 806 DELRAELTllneeAANLRERLESLERRIAAterrledleeqieelsedieSLAAEIEELEELIEE-------LESELEAL 878
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1065 T-RRDGELRALALQRDSLLAERDTLR---------------------QHRARLQAALDDHQTLQEQ----YDALLQMYGE 1118
Cdd:TIGR02168 879 LnERASLEEALALLRSELEELSEELReleskrselrreleelreklaQLELRLEGLEVRIDNLQERlseeYSLTLEEAEA 958
|
730 740
....*....|....*....|....*.
gi 1496288037 1119 KEEQMAELRLDLQDVTQLYKAQLDEL 1144
Cdd:TIGR02168 959 LENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
777-1008 |
6.64e-08 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 57.27 E-value: 6.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 777 ASLEGARRELNELQRssaELARRAAGHQQAQDQQRAADEELARLRAELQQLradMVNEEKKWVSRYESVRAELQESREAL 856
Cdd:COG3096 836 AELAALRQRRSELER---ELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQA---NLLADETLADRLEELREELDAAQEAQ 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 857 A--AQEGARAP--ADTAAVLR----QLAQLQHAALRsATAHSHALRQKDLALAEV-ERSLAI----AVEREQISREECVA 923
Cdd:COG3096 910 AfiQQHGKALAqlEPLVAVLQsdpeQFEQLQADYLQ-AKEQQRRLKQQIFALSEVvQRRPHFsyedAVGLLGENSDLNEK 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 924 LQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTS-------ELESM------CAEHAA---------QL 981
Cdd:COG3096 989 LRARLEQAEEARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQtlqeleqELEELgvqadaEAEERArirrdelheEL 1068
|
250 260
....*....|....*....|....*..
gi 1496288037 982 SSLRTAHAQLEAQLADEKNALDTEKKR 1008
Cdd:COG3096 1069 SQNRSRRSQLEKQLTRCEAEMDSLQKR 1095
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
779-973 |
1.72e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.41 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 779 LEGARRELNELQRSSAELaRRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEkkwvSRYESVRAELQESREALAA 858
Cdd:COG3206 184 LPELRKELEEAEAALEEF-RQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAE----ARLAALRAQLGSGPDALPE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 859 QEGARAPADTAAVLRQLaQLQHAALRSATAHSH----ALRQKdlaLAEVERSLAIAVEREQISRE-ECVALQQRLADVDQ 933
Cdd:COG3206 259 LLQSPVIQQLRAQLAEL-EAELAELSARYTPNHpdviALRAQ---IAALRAQLQQEAQRILASLEaELEALQAREASLQA 334
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1496288037 934 QLSSVRDQLQRLSGTEEQhlqaIRRLEGDLASKTSELESM 973
Cdd:COG3206 335 QLAQLEARLAELPELEAE----LRRLEREVEVARELYESL 370
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
618-864 |
1.72e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 618 ITEDYTQRMSALEKKFQQAIREKDQLRKQLDS----LKAESSSRKNSS------ELENSLK--------EKDEVIAQLQE 679
Cdd:PRK03918 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRElekvLKKESELIKLKElaeqlkELEEKLKkynleeleKKAEEYEKLKE 532
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 680 EGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRD---KIAEQTTELDRLKRSIAAKEELEVNQIEAVYR----LTTANK 752
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDEleeELAELLKELEELGFESVEELEERLKELEPFYNeyleLKDAEK 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 753 KLETELIETKSL---LDDTTHKLEGSRASLEGARRELNELQRSSAElarraAGHQQAQDQQRAADEELARLRAELQQLRa 829
Cdd:PRK03918 613 ELEREEKELKKLeeeLDKAFEELAETEKRLEELRKELEELEKKYSE-----EEYEELREEYLELSRELAGLRAELEELE- 686
|
250 260 270
....*....|....*....|....*....|....*
gi 1496288037 830 DMVNEEKKWVSRYESVRAELQESREALAAQEGARA 864
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
824-1101 |
3.47e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 3.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 824 LQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGARAPADTAAVLRQLAQlQHAALRSATAHSHALRQKdLALAEV 903
Cdd:COG4913 209 LDDFVREYMLEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAE-RYAAARERLAELEYLRAA-LRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 904 ERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQH-LQAIRRLEGDLASKTSELEsmcaEHAAQLS 982
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELE----ERERRRA 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 983 SLRTAHAQLEAQLADEKNALDTekkrnaiLQEQVSVRCERgdvspsqsvisdslsaslWHSEEGRTTptgsalcvedtlA 1062
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAA-------LRAEAAALLEA------------------LEEELEALE------------E 405
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1496288037 1063 QLTRRDGELRALALQRDSLLAERDTLRQHR----ARLQAALDD 1101
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDA 448
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
532-796 |
3.52e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 532 LATKIRGHNRELSEASVQSNTSDESQGSENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLMAKHE 611
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 612 GgdintiTEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQ 690
Cdd:TIGR02168 825 R------LESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEELEELIEELESELEALLNERASLEEALALLRSELEE 898
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 691 HSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAakeelevNQIEAVyrltTANKKLETELIETKSLLDDtth 770
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-------NLQERL----SEEYSLTLEEAEALENKIE--- 964
|
250 260
....*....|....*....|....*.
gi 1496288037 771 klegsrASLEGARRELNELQRSSAEL 796
Cdd:TIGR02168 965 ------DDEEEARRRLKRLENKIKEL 984
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
815-1015 |
3.74e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 3.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 815 EELARLRAELQQLRADMVNEEKKwVSRYESVRA---ELQESREALAAQEGARAPADTAAVLRQLAQLQHAalrsatahsh 891
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQ-IELLEPIRElaeRYAAARERLAELEYLRAALRLWFAQRRLELLEAE---------- 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 892 aLRQKDLALAEVERSLAIAVEREQISREECVALQ--------QRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDL 963
Cdd:COG4913 297 -LEELRAELARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1496288037 964 ASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQ 1015
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
748-980 |
3.94e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.61 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 748 TTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAghqQAQDQQRAADEELARLRAELQQL 827
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR---ALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 828 RADMVNEEKKWVSR-YESVRAELQESREALAAQEGARAPADTAAVLRQLAQLQHAALRsatahshALRQKDLALAEVERS 906
Cdd:COG4942 96 RAELEAQKEELAELlRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE-------ELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 907 LAIAVEREQISREEcvaLQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQ 980
Cdd:COG4942 169 LEAERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
841-1152 |
4.31e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 841 RYESVRAELQESREALAAQegarapADTAAVLRQL-AQLQHAALRSATAHSHALRQKdlaLAEVERSLAIAVEreqisre 919
Cdd:TIGR02168 190 RLEDILNELERQLKSLERQ------AEKAERYKELkAELRELELALLVLRLEELREE---LEELQEELKEAEE------- 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 920 ECVALQQRLADVDQQLSSVRDQLQRLsgteEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEK 999
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSEL----EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1000 NALDTEKKRNAILQEQVSvrcergdvspSQSVISDSLSASLwhsEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQRD 1079
Cdd:TIGR02168 330 SKLDELAEELAELEEKLE----------ELKEELESLEAEL---EELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1080 SLLAERDTLRQHRARLQAALDDHQTLQE---------QYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQA 1150
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEellkkleeaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA 476
|
..
gi 1496288037 1151 AQ 1152
Cdd:TIGR02168 477 LD 478
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
628-862 |
1.03e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 628 ALEKKFQQAIREKDQLRKQLDSLKAESSSR-KNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNI-IKKLRAKDKDN 705
Cdd:TIGR02169 234 ALERQKEAIERQLASLEEELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAeIASLERSIAEK 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 706 EQVIKGLRDKIAEQTTELDRLKRSIAA-KEELEVNQIEaVYRLTTANKKLETELIETKSLLDD-------TTHKLEGSRA 777
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEElEREIEEERKR-RDKLTEEYAELKEELEDLRAELEEvdkefaeTRDELKDYRE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 778 SLEGARRELNELQRSS------------------AELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKW- 838
Cdd:TIGR02169 393 KLEKLKREINELKRELdrlqeelqrlseeladlnAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELy 472
|
250 260
....*....|....*....|....*....
gi 1496288037 839 -----VSRYESVRAELQESREALAAQEGA 862
Cdd:TIGR02169 473 dlkeeYDRVEKELSKLQRELAEAEAQARA 501
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
556-1143 |
1.22e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.05 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 556 SQGSENERLMRRLCEMAELLEARENrlLEMSRSNADLA-ESNADLKGQVESLMAKHEG--GDINTITEDYTQRMSALEKK 632
Cdd:TIGR00618 150 PQGEFAQFLKAKSKEKKELLMNLFP--LDQYTQLALMEfAKKKSLHGKAELLTLRSQLltLCTPCMPDTYHERKQVLEKE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 633 FQQAIREKDQ-------LRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKL--ARQQLQHSNIIKKLRAKDK 703
Cdd:TIGR00618 228 LKHLREALQQtqqshayLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERInrARKAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 704 DNEQVIKGLRDKIAEQTTELdrLKRSIAAKEELEV-NQIEAVYRLTTANKKLETELIETKSLLDDT------THKLEGSR 776
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLL--MKRAAHVKQQSSIeEQRRLLQTLHSQEIHIRDAHEVATSIREIScqqhtlTQHIHTLQ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 777 ASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAE--LQQLRADMVNEEKKWVSRYESVR-AELQESR 853
Cdd:TIGR00618 386 QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQqeLQQRYAELCAAAITCTAQCEKLEkIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 854 EALAA------------QEGARAPADTAAVLRQLAQLQhAALRSATAHSHALRQkDLALAEVERSLAIAVEreqisrEEC 921
Cdd:TIGR00618 466 QSLKEreqqlqtkeqihLQETRKKAVVLARLLELQEEP-CPLCGSCIHPNPARQ-DIDNPGPLTRRMQRGE------QTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 922 VALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEhAAQLSSLRTAHAQLEAQLADEKNA 1001
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNI-TVRLQDLTEKLSEAEDMLACEQHA 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1002 LDTEKKRNAILQEqvsVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTgSALCVEDTLAQLTRRDGELRALALQRDSL 1081
Cdd:TIGR00618 617 LLRKLQPEQDLQD---VRLHLQQCSQELALKLTALHALQLTLTQERVREH-ALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288037 1082 LAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDE 1143
Cdd:TIGR00618 693 TYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQART 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
663-999 |
1.24e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 663 LENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQV---IKGLRDKIAEQTTELD----RLKRSIAAKEE 735
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVlreINEISSELPELREELEklekEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 736 LEVNQIEAVYRLTTAnKKLETELIETKSLLDDTTHKLEgsraSLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADE 815
Cdd:PRK03918 240 IEELEKELESLEGSK-RKLEEKIRELEERIEELKKEIE----ELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEK 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 816 ELARLRAELQQLRADMVNEEKKwVSRYESVRAELQESREALAAQEG-ARAPADTAAVLRQLAQLQHaalrsatahshalR 894
Cdd:PRK03918 315 RLSRLEEEINGIEERIKELEEK-EERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKK-------------R 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 895 QKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSG------------TEEQHLQAIRRLEGD 962
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAE 460
|
330 340 350
....*....|....*....|....*....|....*..
gi 1496288037 963 LASKTSELesmcAEHAAQLSSLRTAHAQLEAQLADEK 999
Cdd:PRK03918 461 LKRIEKEL----KEIEEKERKLRKELRELEKVLKKES 493
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
674-1126 |
2.00e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 674 IAQLQEEGEKLARQQLQhsniikklraKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEvnqiEAVYRLTTANKK 753
Cdd:COG4717 48 LERLEKEADELFKPQGR----------KPELNLKELKELEEELKEAEEKEEEYAELQEELEELE----EELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 754 LETELIETKSLLDDTTHKLEgsrasLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRAD--- 830
Cdd:COG4717 114 LREELEKLEKLLQLLPLYQE-----LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQlsl 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 831 -MVNEEKKWVSRYESVRAELQESREALAAQEGARAPADtaavlRQLAQLQhAALRSATAHSHALRQKDLALAEVERSLAI 909
Cdd:COG4717 189 aTEEELQDLAEELEELQQRLAELEEELEEAQEELEELE-----EELEQLE-NELEAAALEERLKEARLLLLIAAALLALL 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 910 AVEREQISREECVA------------LQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEH 977
Cdd:COG4717 263 GLGGSLLSLILTIAgvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLEL 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 978 AAQLSSLRTAHAQLEaQLADEKNALDTEKKRNAILQ-------EQVSVRCERGDVSPSQSVISDSLSASLwhseeGRTTP 1050
Cdd:COG4717 343 LDRIEELQELLREAE-ELEEELQLEELEQEIAALLAeagvedeEELRAALEQAEEYQELKEELEELEEQL-----EELLG 416
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288037 1051 TGSALCVEDTLAQLTRRDGELRAlalQRDSLLAERDTLRQHRARLQAALDDHQTlQEQYDALLQMYGEKEEQMAEL 1126
Cdd:COG4717 417 ELEELLEALDEEELEEELEELEE---ELEELEEELEELREELAELEAELEQLEE-DGELAELLQELEELKAELREL 488
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
573-965 |
2.05e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 52.26 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 573 ELLEARENRLLEMSRSNADLAESNADLKGQVES--------LMAKHEGGDIntitEDYTQRMSALEKKfqqaIREKDQLR 644
Cdd:COG3096 299 RQLAEEQYRLVEMARELEELSARESDLEQDYQAasdhlnlvQTALRQQEKI----ERYQEDLEELTER----LEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 645 KQLDSLKAESSSRKNSSELE-NSLKEKdevIAQLQEEGEKLARQQLQHSNIIKKL-RAK--------DKDN-EQVIKGLR 713
Cdd:COG3096 371 EEAAEQLAEAEARLEAAEEEvDSLKSQ---LADYQQALDVQQTRAIQYQQAVQALeKARalcglpdlTPENaEDYLAAFR 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 714 DKIAEQTTEL----DRLKRSIAAKeelevNQIEAVYRLTTA-------------NKKLETELIETKSLLDdTTHKLEGSR 776
Cdd:COG3096 448 AKEQQATEEVleleQKLSVADAAR-----RQFEKAYELVCKiageversqawqtARELLRRYRSQQALAQ-RLQQLRAQL 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 777 ASLEGARRELNELQRSSAELARRAAGhqqaqdqQRAADEELARLRAELQQLRADMVNEekkwVSRYESVRAELQESREAL 856
Cdd:COG3096 522 AELEQRLRQQQNAERLLEEFCQRIGQ-------QLDAAEELEELLAELEAQLEELEEQ----AAEAVEQRSELRQQLEQL 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 857 AAQE---GARAPA--DTAAVLRQLAQLQHAALRSATAHSHALRQkdlaLAEVERSLaiavereQISREECVALQQRLadv 931
Cdd:COG3096 591 RARIkelAARAPAwlAAQDALERLREQSGEALADSQEVTAAMQQ----LLEREREA-------TVERDELAARKQAL--- 656
|
410 420 430
....*....|....*....|....*....|....*
gi 1496288037 932 DQQLSsvrdQLQRLSGTEEQHLQAIR-RLEGDLAS 965
Cdd:COG3096 657 ESQIE----RLSQPGGAEDPRLLALAeRLGGVLLS 687
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
530-788 |
2.14e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 530 KSLATKIRGHNRELSeasvQSNTSDESQGSENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLmaK 609
Cdd:TIGR02168 785 EELEAQIEQLKEELK----ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL--A 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 610 HEGGDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE-SSSRKNSSELENSLKEKDEVIAQLQEEGEKLaRQQ 688
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEElRELESKRSELRRELEELREKLAQLELRLEGL-EVR 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 689 LQhsNIIKKLRAKDKDNEQVIKGLRDKI----AEQTTELDRLKRSIAAKEELEVNQIEAVyrlttanKKLETELIETKSL 764
Cdd:TIGR02168 938 ID--NLQERLSEEYSLTLEEAEALENKIeddeEEARRRLKRLENKIKELGPVNLAAIEEY-------EELKERYDFLTAQ 1008
|
250 260
....*....|....*....|....
gi 1496288037 765 LDDtthkLEGSRASLEGARRELNE 788
Cdd:TIGR02168 1009 KED----LTEAKETLEEAIEEIDR 1028
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
712-1012 |
2.52e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 51.22 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 712 LRDKIAEQTTELDRLkRSIAAKEELEVNQIEAvyrLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQR 791
Cdd:pfam19220 8 LRVRLGEMADRLEDL-RSLKADFSQLIEPIEA---ILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 792 SSAELARRAAGHQQAQDQQRAADEELA-------------------------RLRAELQQLRADMVNEEKKwVSRYESVR 846
Cdd:pfam19220 84 ELEELVARLAKLEAALREAEAAKEELRielrdktaqaealerqlaaeteqnrALEEENKALREEAQAAEKA-LQRAEGEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 847 AELQEsREALAAQEGARAPADTAAVLRQLAQL-------------QHAALR---SATAHSHALRQKDLALAEVERSLAIA 910
Cdd:pfam19220 163 ATARE-RLALLEQENRRLQALSEEQAAELAELtrrlaeletqldaTRARLRaleGQLAAEQAERERAEAQLEEAVEAHRA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 911 VEREQISREEcvALQQRLADVDQQLSSVRDQLQRLSgteeqhlQAIRRLEGDLASKTSELESMCAEHAAqlssLRTAHAQ 990
Cdd:pfam19220 242 ERASLRMKLE--ALTARAAATEQLLAEARNQLRDRD-------EAIRAAERRLKEASIERDTLERRLAG----LEADLER 308
|
330 340
....*....|....*....|..
gi 1496288037 991 LEAQLADEKNALDTEKKRNAIL 1012
Cdd:pfam19220 309 RTQQFQEMQRARAELEERAEML 330
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
540-1067 |
2.97e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 540 NRELSEASVQSNTSDESQGSENERLMRRLCEM----AEL-LEAREN-----------------------RLLEMSRSNAD 591
Cdd:pfam15921 355 NSELTEARTERDQFSQESGNLDDQLQKLLADLhkreKELsLEKEQNkrlwdrdtgnsitidhlrrelddRNMEVQRLEAL 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 592 LAESNADLKGQVESLMAKHEGGDintiteDYTQRMSALEKKFQQAireKDQLRKQLDSLKAE----SSSRKNSSELENSL 667
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKN------ESLEKVSSLTAQLEST---KEMLRKVVEELTAKkmtlESSERTVSDLTASL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 668 KEKDEVIAQLQEEGEKLAR------QQLQH-----------SNIIKKLRAKDKDNEQVIKGLRDKIaEQTTELDRLKRSI 730
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSrvdlklQELQHlknegdhlrnvQTECEALKLQMAEKDKVIEILRQQI-ENMTQLVGQHGRT 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 731 AAKEELEVNQIEAvyrlTTANKKLEteLIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAaghQQAQDQQ 810
Cdd:pfam15921 585 AGAMQVEKAQLEK----EINDRRLE--LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAV---KDIKQER 655
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 811 RAADEELARLRAELQQLRAD--------------MVNEEKKWVSRYESVRAELQESREALAAQEGARAPADTAAV----- 871
Cdd:pfam15921 656 DQLLNEVKTSRNELNSLSEDyevlkrnfrnkseeMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgmqkq 735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 872 ----------LRQLAQLQHAALRSATAHSHALRQ------KDLALAEVERS-----LAIAVEREQISREECVALQQRLAD 930
Cdd:pfam15921 736 itakrgqidaLQSKIQFLEEAMTNANKEKHFLKEeknklsQELSTVATEKNkmageLEVLRSQERRLKEKVANMEVALDK 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 931 VDQQLSSVRDQLQRLSGT----EEQHLQAIRRLEGDLASKTSELE-------SMCAEHAAQLSSLRTahAQLEAQLADEK 999
Cdd:pfam15921 816 ASLQFAECQDIIQRQEQEsvrlKLQHTLDVKELQGPGYTSNSSMKprllqpaSFTRTHSNVPSSQST--ASFLSHHSRKT 893
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1496288037 1000 NALDTEKKRN--AILQEQVSVRCERGDVSPSQSvisdslsaslwhSEEGRTTPTGSAL-CVEDTLAQLTRR 1067
Cdd:pfam15921 894 NALKEDPTRDlkQLLQELRSVINEEPTVQLSKA------------EDKGRAPSLGALDdRVRDCIIESSLR 952
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
782-998 |
3.08e-06 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 51.23 E-value: 3.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 782 ARRELNELQRSSAELARRAAghqqaqdQQRAADEELARLR---AELQQLradmvNEEKKWVSRYESVRAELQESREALAA 858
Cdd:COG0497 170 LKKELEELRADEAERARELD-------LLRFQLEELEAAAlqpGEEEEL-----EEERRRLSNAEKLREALQEALEALSG 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 859 QEGarapadtaAVLRQLAQLQHaALRSATAHSHALrqKDLA---------LAEVERSLAIAVEREQISREECVALQQRLA 929
Cdd:COG0497 238 GEG--------GALDLLGQALR-ALERLAEYDPSL--AELAerlesalieLEEAASELRRYLDSLEFDPERLEEVEERLA 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 930 --------------DVDQQLSSVRDQLQRLSGTEEQhlqaIRRLEGDLAsktsELESMCAEHAAQLSSLRTAHA-QLEAQ 994
Cdd:COG0497 307 llrrlarkygvtveELLAYAEELRAELAELENSDER----LEELEAELA----EAEAELLEAAEKLSAARKKAAkKLEKA 378
|
....
gi 1496288037 995 LADE 998
Cdd:COG0497 379 VTAE 382
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
670-1008 |
3.64e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 51.50 E-value: 3.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 670 KDEVIAQLQEEGEKLARQQLQHSNIIKKLR----------------AKDKDNEQVIKGLRDKIAEQTTELDRLkrsiAAK 733
Cdd:PRK04863 784 REKRIEQLRAEREELAERYATLSFDVQKLQrlhqafsrfigshlavAFEADPEAELRQLNRRRVELERALADH----ESQ 859
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 734 EELEVNQIEAVYRLTTANKKLETELietkSLLDDTTHKLEgsrasLEGARRELNELQRSSAELARRAAghqqaqdqqraa 813
Cdd:PRK04863 860 EQQQRSQLEQAKEGLSALNRLLPRL----NLLADETLADR-----VEEIREQLDEAEEAKRFVQQHGN------------ 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 814 deELARLRAELQQLRADMvneekkwvSRYESVRAELQESREALA-AQEGARAPADTAAVLRQLAQLQHAALRSATAH-SH 891
Cdd:PRK04863 919 --ALAQLEPIVSVLQSDP--------EQFEQLKQDYQQAQQTQRdAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDlNE 988
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 892 ALRQKdLALAEVERSLAiaveREQI--SREECVALQQRLADVDQQLSSVRDQLQRLsgteEQHLQAI-----RRLEGDLA 964
Cdd:PRK04863 989 KLRQR-LEQAEQERTRA----REQLrqAQAQLAQYNQVLASLKSSYDAKRQMLQEL----KQELQDLgvpadSGAEERAR 1059
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1496288037 965 SKTSELEsmcaehaAQLSSLRTAHAQLEAQLADEKNALDTEKKR 1008
Cdd:PRK04863 1060 ARRDELH-------ARLSANRSRRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-792 |
4.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 620 EDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAE----------SSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQL 689
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERrealqrlaeySWDEIDVASAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 690 QhsniIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEEL--EVNQIEAVYRLTTANKKLETELIE--TKSLL 765
Cdd:COG4913 693 Q----LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleAAEDLARLELRALLEERFAAALGDavERELR 768
|
170 180
....*....|....*....|....*..
gi 1496288037 766 DDTTHKLEGSRASLEGARRELNELQRS 792
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
923-1153 |
4.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 923 ALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELesmcAEHAAQLSSLRTAHAQLEAQLADEKNAL 1002
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRI----RALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1003 DTEKKRnaiLQEQVSVRCERGDVSPSQSVIS-DSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQRDSL 1081
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288037 1082 LAERDTLRQHRARLQAALDDHQTLQEQydaLLQMYGEKEEQMAELRLDLQDvtqlYKAQLDELIALKQAAQR 1153
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEE----LEALIARLEAEAAAAAE 241
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
779-1147 |
5.76e-06 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 50.79 E-value: 5.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 779 LEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRAD---------------------MVNEEKK 837
Cdd:COG3903 487 RAAARRRHADYYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWALAHgdaelalrlaaalapfwflrgLLREGRR 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 838 WVSRYESVRAELQESREALAAQEGARAPADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQIS 917
Cdd:COG3903 567 WLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAA 646
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 918 REECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLAD 997
Cdd:COG3903 647 AAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAA 726
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 998 EKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQ 1077
Cdd:COG3903 727 LLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAA 806
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1078 RDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIAL 1147
Cdd:COG3903 807 AAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAA 876
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
746-1150 |
1.24e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 746 RLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAAdEELARLRAELQ 825
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY-QELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 826 QLRAdmvneekkwvsRYESVRAELQESREALAAQEGARApadtaavlrQLAQLQHAALRSATAHSHALRQkdlALAEVER 905
Cdd:COG4717 143 ELPE-----------RLEELEERLEELRELEEELEELEA---------ELAELQEELEELLEQLSLATEE---ELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 906 SLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSgtEEQHLQAIRRL-------------EGDLASKTSELES 972
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAA--LEERLKEARLLlliaaallallglGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 973 MCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLW------HSEEG 1046
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIeelqelLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1047 RTTPTGSALCVEDTLAQLTRRDG-----ELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDallqmYGEKEE 1121
Cdd:COG4717 358 ELEEELQLEELEQEIAALLAEAGvedeeELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-----EEELEE 432
|
410 420
....*....|....*....|....*....
gi 1496288037 1122 QMAELRLDLQDVTQLYKAQLDELIALKQA 1150
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAE 461
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
545-1007 |
1.28e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 545 EASVQSNTSDESQGSENERLMRRLCEMAELLEARE--NRLLEMSRSNADLAESNADLKGQVESLMAKHEggdintitedY 622
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADeaKKKAEEDKKKADELKKAAAAKKKADEAKKKAE----------E 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 623 TQRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKD 702
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 703 KDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKsllddttHKLEGSRASLEGA 782
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA-------KKAEEDKNMALRK 1582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 783 RRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAElqQLRADmvNEEKKWVSRYESVRAElqesrEALAAQEGA 862
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE--ELKKA--EEEKKKVEQLKKKEAE-----EKKKAEELK 1653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 863 RAPADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISR--EECVALQQRLADVDQQLSSVRD 940
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKkeAEEKKKAEELKKAEEENKIKAE 1733
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288037 941 QLQRLSGTEEQHLQAIRRLEGDlASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKK 1007
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEE-KKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
890-1017 |
1.43e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 48.42 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 890 SHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSE 969
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1496288037 970 LES---MCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVS 1017
Cdd:PRK09039 125 LDSekqVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
599-728 |
1.73e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.09 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 599 LKGQ-VESLMAKHEGGDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAESSsrknssELENSLKEKDEVIAQL 677
Cdd:COG2433 373 IRGLsIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVE------ELEAELEEKDERIERL 446
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 678 QEEGEKLARQQLQHSNIIKKLRAKDKDNEQV---IKGLRDKIAEQTTELDRLKR 728
Cdd:COG2433 447 ERELSEARSEERREIRKDREISRLDREIERLereLEEERERIEELKRKLERLKE 500
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
630-877 |
1.75e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 630 EKKFQQAIREKDQL----RKQLDSLKAESSsrknssELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIiKKLRAKDKDN 705
Cdd:COG4913 591 EKDDRRRIRSRYVLgfdnRAKLAALEAELA------ELEEELAEAEERLEALEAELDALQERREALQRL-AEYSWDEIDV 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 706 EQVIKGLRDKIAEQT------TELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASL 779
Cdd:COG4913 664 ASAEREIAELEAELErldassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 780 EGARRELNELQRSSAELARRAAghqqaqDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALaaq 859
Cdd:COG4913 744 RLELRALLEERFAAALGDAVER------ELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESL--- 814
|
250
....*....|....*...
gi 1496288037 860 egarapADTAAVLRQLAQ 877
Cdd:COG4913 815 ------PEYLALLDRLEE 826
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
832-1149 |
1.90e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 832 VNEEKKWVSRYESVRAELQESREALAAQEgARApadtAAVLRQLAQLQ------HAALRSATAH---------------- 889
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQ-YRL----VEMARELEELSaresdlEQDYQAASDHlnlvqtalrqqekier 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 890 --------SHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLssvrDQLQRLSGTEEQHLQAIRRLEG 961
Cdd:COG3096 352 yqedleelTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL----DVQQTRAIQYQQAVQALEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 962 --DLASKTSE-LESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVsvrcerGDVSPSQSvisdslsa 1038
Cdd:COG3096 428 lcGLPDLTPEnAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIA------GEVERSQA-------- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1039 slWhseegrttptgsalcveDTLAQLTRRDGELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGE 1118
Cdd:COG3096 494 --W-----------------QTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEE 554
|
330 340 350
....*....|....*....|....*....|.
gi 1496288037 1119 KEEQMAELRLDLQDVTQLYKAQLDELIALKQ 1149
Cdd:COG3096 555 LEELLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
573-956 |
1.99e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 49.19 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 573 ELLEARENRLLEMSRSNADLAESNADLKGQVESLmakheggdintitEDYTQRMSALEKKFQQAIR-------------E 639
Cdd:PRK04863 300 RQLAAEQYRLVEMARELAELNEAESDLEQDYQAA-------------SDHLNLVQTALRQQEKIERyqadleeleerleE 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 640 KDQLRKQLDSLKAESSSRKNSSELEnslkeKDEVIAQLQEEGEKLARQQ---LQHSNIIKKL-RAKD---------KDNE 706
Cdd:PRK04863 367 QNEVVEEADEQQEENEARAEAAEEE-----VDELKSQLADYQQALDVQQtraIQYQQAVQALeRAKQlcglpdltaDNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 707 QVIKGLRDKIAEQTTELDRLKRSIAAKEELeVNQIEAVYRLTTA-------------NKKLETELIETKsLLDDTTHKLE 773
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAA-HSQFEQAYQLVRKiagevsrseawdvARELLRRLREQR-HLAEQLQQLR 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 774 GSRASLEGARRELNELQRSSAELARRAAghqqaqdQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESR 853
Cdd:PRK04863 520 MRLSELEQRLRQQQRAERLLAEFCKRLG-------KNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQ 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 854 eALAAQEGARAPADTAA--VLRQLAQLQHAALrsatAHSHALRQKDLALAEVERSLaiAVEREQISREEcvalqqrladv 931
Cdd:PRK04863 593 -ARIQRLAARAPAWLAAqdALARLREQSGEEF----EDSQDVTEYMQQLLEREREL--TVERDELAARK----------- 654
|
410 420
....*....|....*....|....*
gi 1496288037 932 dQQLSSVRDQLQRLSGTEEQHLQAI 956
Cdd:PRK04863 655 -QALDEEIERLSQPGGSEDPRLNAL 678
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
855-1146 |
2.39e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 48.75 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 855 ALAAQEGARAPADTAAVLRQLAQLQHAALRSATAhshALRQKDLalaevERSLAIaVEREQISREECVALQQRLADVDQQ 934
Cdd:PRK11281 25 AFARAASNGDLPTEADVQAQLDALNKQKLLEAED---KLVQQDL-----EQTLAL-LDKIDRQKEETEQLKQQLAQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 935 LSSVRDQLQRLSGTEEQHLQA------IRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLE-AQladekNALDTEKK 1007
Cdd:PRK11281 96 LRQAQAELEALKDDNDEETREtlstlsLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPErAQ-----AALYANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1008 RnaiLQEqvsVRCERGDVSPSQSVISDSLSAslwhseegrttptgsALCVEDTL--AQLTRRDGELRALALQRDSLLAER 1085
Cdd:PRK11281 171 R---LQQ---IRNLLKGGKVGGKALRPSQRV---------------LLQAEQALlnAQNDLQRKSLEGNTQLQDLLQKQR 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1496288037 1086 DTLRQHRARLQAALddhQTLQEqydALLQMYGEKEEQMAElRLDLQDVTQlyKAQLDELIA 1146
Cdd:PRK11281 230 DYLTARIQRLEHQL---QLLQE---AINSKRLTLSEKTVQ-EAQSQDEAA--RIQANPLVA 281
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
698-1153 |
3.01e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 698 LRAKDKDNEQVIKGLR--DKIAEQTTELDRLKRSIAAKEELEvnqieavyrlttaNKKLETELIETKSLLDDTTHKLEGS 775
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFplDQYTQLALMEFAKKKSLHGKAELL-------------TLRSQLLTLCTPCMPDTYHERKQVL 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 776 RASLEGARRELNELQRSSAELARRaaghQQAQDQQRAADEELARLRAELQQLRADM---------VNEEKKW------VS 840
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHAYLTQK----REAQEEQLKKQQLLKQLRARIEELRAQEavleetqerINRARKAaplaahIK 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 841 RYESVRAELQESREALAAQEGARAPA--DTAAVLRQLAQLQHAALRSATAHSHALRQKDLAlaEVERSLAIAVEREQISR 918
Cdd:TIGR00618 301 AVTQIEQQAQRIHTELQSKMRSRAKLlmKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH--EVATSIREISCQQHTLT 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 919 EECVALQQRLADVDQQ---LSSVRDQLQRLSGTEEQHLQAIRRLEGDLAS---------KTSELESMCAEHAAQLSSLRT 986
Cdd:TIGR00618 379 QHIHTLQQQKTTLTQKlqsLCKELDILQREQATIDTRTSAFRDLQGQLAHakkqqelqqRYAELCAAAITCTAQCEKLEK 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 987 AHAQ--------LEAQLADEKNALDTEKKRNAI-------LQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPT 1051
Cdd:TIGR00618 459 IHLQesaqslkeREQQLQTKEQIHLQETRKKAVvlarlleLQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1052 GSALCVEDTLAQLTRRDGELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQ 1131
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
490 500
....*....|....*....|..
gi 1496288037 1132 DVTQLYKAQLDELIALKQAAQR 1153
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQE 640
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
664-890 |
3.11e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.52 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 664 ENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEA 743
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 744 VYRLTTANKKLETeLIETKSLlDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAghqqaqdQQRAADEELARLRAE 823
Cdd:COG3883 95 LYRSGGSVSYLDV-LLGSESF-SDFLDRLSALSKIADADADLLEELKADKAELEAKKA-------ELEAKLAELEALKAE 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288037 824 LQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGARAPADTAAVLRQLAQLQHAALRSATAHS 890
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
616-861 |
3.14e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 616 NTITEDYTQRmsALEKKFQQAIREKDQLRKQLDSLkaesssRKNSSELENSLKE--KDEVIAQLQEEGEKLARQQLQHSN 693
Cdd:COG3206 155 NALAEAYLEQ--NLELRREEARKALEFLEEQLPEL------RKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 694 IIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKE------ELEVNQIEAVYRLTTAN---KKLETELIETKSL 764
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQlraqlaELEAELAELSARYTPNHpdvIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 765 LDDTTHK-LEGSRASLEGARRELNELQRSSAELARRAAghqqaqdqqraadeELARLRAELQQLRADMVNEEKkwvsRYE 843
Cdd:COG3206 307 LQQEAQRiLASLEAELEALQAREASLQAQLAQLEARLA--------------ELPELEAELRRLEREVEVARE----LYE 368
|
250
....*....|....*...
gi 1496288037 844 SVRAELQESREALAAQEG 861
Cdd:COG3206 369 SLLQRLEEARLAEALTVG 386
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
575-801 |
3.38e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 575 LEARENRLLEMSRSNADLAESNADLKGQVESLMAKHEggDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAES 654
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA--ALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 655 SsrknsselenslkekdEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKE 734
Cdd:COG4942 107 A----------------ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1496288037 735 ELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAA 801
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
560-798 |
3.51e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 560 ENERLMRRLCEMAELLEARENRLlemSRSNADLAESNADLKGQVESLMAKHEgGDINTITEDyTQRMSALEKKFQQAIRE 639
Cdd:PRK03918 490 KKESELIKLKELAEQLKELEEKL---KKYNLEELEKKAEEYEKLKEKLIKLK-GEIKSLKKE-LEKLEELKKKLAELEKK 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 640 KDQLRKQLDSLKAESSSRKNSselenSLKEKDEVIAQLqeegEKLARQQLQHSNIIKKLRAKD---KDNEQVIKGLRDKI 716
Cdd:PRK03918 565 LDELEEELAELLKELEELGFE-----SVEELEERLKEL----EPFYNEYLELKDAEKELEREEkelKKLEEELDKAFEEL 635
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 717 AEQTTELDRLKRSIaakEELEVNQIEAVYR--------LTTANKKLETELIETKSLLDD---TTHKLEGSRASLEGARRE 785
Cdd:PRK03918 636 AETEKRLEELRKEL---EELEKKYSEEEYEelreeyleLSRELAGLRAELEELEKRREEikkTLEKLKEELEEREKAKKE 712
|
250
....*....|...
gi 1496288037 786 LNELQRSSAELAR 798
Cdd:PRK03918 713 LEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
912-1144 |
4.13e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 912 EREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHL--QAIRRLEGD-----LASKTSELESMCAEHAAQLSSL 984
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREyegyeLLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 985 RTAHAQLEAQLAD-EKNALDTEKKRNAI--------LQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSAL 1055
Cdd:TIGR02169 250 EEELEKLTEEISElEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1056 CVEDTLAQLTRRDGELRALALQRDSLLAE----RDTLRQHRARLQAALDDHQTLQEQYDAL---LQMYGEKEEQMAELRL 1128
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEyaelKEELEDLRAELEEVDKEFAETRDELKDYrekLEKLKREINELKRELD 409
|
250
....*....|....*.
gi 1496288037 1129 DLQDVTQLYKAQLDEL 1144
Cdd:TIGR02169 410 RLQEELQRLSEELADL 425
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
772-1144 |
5.05e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 772 LEGSRASLEGARRELNELQRSSAELARR----------AAGHQQAQDQQRAADEELARLRAELQQLRADMvnEEKkwvsr 841
Cdd:PRK04863 295 LYTSRRQLAAEQYRLVEMARELAELNEAesdleqdyqaASDHLNLVQTALRQQEKIERYQADLEELEERL--EEQ----- 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 842 yESVRAELQESREALAAQ-EGARAPADTAAvlRQLA--------------QLQHA--ALRSATAHSHAlrqKDLALAEVE 904
Cdd:PRK04863 368 -NEVVEEADEQQEENEARaEAAEEEVDELK--SQLAdyqqaldvqqtraiQYQQAvqALERAKQLCGL---PDLTADNAE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 905 RSLAIAVEREQisreecvALQQRLADVDQQLSSVRDQLQRLsgteEQHLQAIRRLEGDLASKT--SELESMCAEH----- 977
Cdd:PRK04863 442 DWLEEFQAKEQ-------EATEELLSLEQKLSVAQAAHSQF----EQAYQLVRKIAGEVSRSEawDVARELLRRLreqrh 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 978 -AAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTptgsalc 1056
Cdd:PRK04863 511 lAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMA------- 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1057 VEDTLAQLTRRDGELRALALQrdsLLAERDTLrqhrARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQL 1136
Cdd:PRK04863 584 LRQQLEQLQARIQRLAARAPA---WLAAQDAL----ARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQA 656
|
....*...
gi 1496288037 1137 YKAQLDEL 1144
Cdd:PRK04863 657 LDEEIERL 664
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
631-948 |
5.36e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 47.74 E-value: 5.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 631 KKFQQAIREKDQLRKQL-DSLKAESSSRKN------SSELEnslKEKDEVIAQLQEEGeklarQQLQHsniikklrakDK 703
Cdd:PRK10929 68 KQYQQVIDNFPKLSAELrQQLNNERDEPRSvppnmsTDALE---QEILQVSSQLLEKS-----RQAQQ----------EQ 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 704 DNEQVIKGLRDKIAEQTTELDRLkrsiaakeeleVNQIEAvyRLTTANKKlETELIETKSLLddtthklegsrASLEGAR 783
Cdd:PRK10929 130 DRAREISDSLSQLPQQQTEARRQ-----------LNEIER--RLQTLGTP-NTPLAQAQLTA-----------LQAESAA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 784 RE--LNELqrssaELARRAAGHqqaqdqqraaDEELARLRAELQQlradmvneekkwvSRYESVRAELQESREALAAQ-- 859
Cdd:PRK10929 185 LKalVDEL-----ELAQLSANN----------RQELARLRSELAK-------------KRSQQLDAYLQALRNQLNSQrq 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 860 -EGARAPADTAAVLRQLAQLQHAALRSatahshalrqkdlalAEVERSLAIAVErEQISREECVALQQRLAD-----VDQ 933
Cdd:PRK10929 237 rEAERALESTELLAEQSGDLPKSIVAQ---------------FKINRELSQALN-QQAQRMDLIASQQRQAAsqtlqVRQ 300
|
330
....*....|....*
gi 1496288037 934 QLSSVRDQLQRLSGT 948
Cdd:PRK10929 301 ALNTLREQSQWLGVS 315
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
602-791 |
5.38e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 5.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 602 QVESLMAKHEGGDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNSSELENSlkekDEVIAQLQEEG 681
Cdd:COG3206 197 ALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ----SPVIQQLRAQL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 682 EKLARQqlqhsniIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAvyRLTTANKKLEteliet 761
Cdd:COG3206 273 AELEAE-------LAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQA--REASLQAQLA------ 337
|
170 180 190
....*....|....*....|....*....|
gi 1496288037 762 ksllddtthKLEGSRASLEGARRELNELQR 791
Cdd:COG3206 338 ---------QLEARLAELPELEAELRRLER 358
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
771-1098 |
5.89e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.64 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 771 KLEGSRASLEGARRELNELQRSSAELA---RRAAGHQQAQDQQRAADEELARLRAELQQLRADMvnEEKkwvsryESVRA 847
Cdd:COG3096 300 QLAEEQYRLVEMARELEELSARESDLEqdyQAASDHLNLVQTALRQQEKIERYQEDLEELTERL--EEQ------EEVVE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 848 ELQESREALAAQ-EGARAPADTAAVlrQLAQLQHA---ALRSATAHSHALRQK----------DLALAEVERSLAIAVER 913
Cdd:COG3096 372 EAAEQLAEAEARlEAAEEEVDSLKS--QLADYQQAldvQQTRAIQYQQAVQALekaralcglpDLTPENAEDYLAAFRAK 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 914 EQISREECVALQQRLADVD---------------------------------QQLSSVRDQLQRLSGTEeQHLQAIRRLE 960
Cdd:COG3096 450 EQQATEEVLELEQKLSVADaarrqfekayelvckiageversqawqtarellRRYRSQQALAQRLQQLR-AQLAELEQRL 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 961 GDLASKTSELESMCAEHAAQLSS---LRTAHAQLEAQLAD-EKNALDTEKKRNAILQEQVSVRCERGDVSpSQSVISDSL 1036
Cdd:COG3096 529 RQQQNAERLLEEFCQRIGQQLDAaeeLEELLAELEAQLEElEEQAAEAVEQRSELRQQLEQLRARIKELA-ARAPAWLAA 607
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288037 1037 SASLWHSEEGRTTPTGSALCVEDTLAQLTRRdgeLRALALQRDSLLAERDTLRQHRARLQAA 1098
Cdd:COG3096 608 QDALERLREQSGEALADSQEVTAAMQQLLER---EREATVERDELAARKQALESQIERLSQP 666
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
638-797 |
1.18e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 638 REKDQLRKQLDSLKAESSsrknssELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRD-KI 716
Cdd:COG1579 17 SELDRLEHRLKELPAELA------ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 717 AEQ-TTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEgarRELNELQRSSAE 795
Cdd:COG1579 91 YEAlQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE---AELEELEAEREE 167
|
..
gi 1496288037 796 LA 797
Cdd:COG1579 168 LA 169
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
575-1144 |
2.13e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 575 LEARENRLLEmsrsnaDLAESNADLKGQVESLMAkheggDINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDS-LKAE 653
Cdd:pfam12128 270 DETLIASRQE------ERQETSAELNQLLRTLDD-----QWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAfLDAD 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 654 SSSRKNSSELENSLKekdeviAQLQEEGEKLARQQLQHSNIIKK---LRAK-DKDNEQVIKGLRDKIAEQTTELDRLKRS 729
Cdd:pfam12128 339 IETAAADQEQLPSWQ------SELENLEERLKALTGKHQDVTAKynrRRSKiKEQNNRDIAGIKDKLAKIREARDRQLAV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 730 IA-----------------------AKEELEVNQIEAVYRL--TTANKKLETELIETKSLLDDTTHKLEGSRASLEGARR 784
Cdd:pfam12128 413 AEddlqaleselreqleagklefneEEYRLKSRLGELKLRLnqATATPELLLQLENFDERIERAREEQEAANAEVERLQS 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 785 ELNELQRSSAELARRAAGHQQAQDQQRAADEEL-ARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGAR 863
Cdd:pfam12128 493 ELRQARKRRDQASEALRQASRRLEERQSALDELeLQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 864 APADTAAVLRQLAQLQHAALRSATAHSHALRQKdlaLAEVERSLAIAVEREQISREECV-------ALQQRLADVDQQLS 936
Cdd:pfam12128 573 SVGGELNLYGVKLDLKRIDVPEWAASEEELRER---LDKAEEALQSAREKQAAAEEQLVqangeleKASREETFARTALK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 937 SVRDQLQRLSGteeQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKkrNAILQEQV 1016
Cdd:pfam12128 650 NARLDLRRLFD---EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEK--QAYWQVVE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1017 SVRcergdvspsqSVISDSLSASLWHSEEGRTTPTGSalCVEDTLAQLTRRD-GELRALALQRDSLLAERdTLRQHRARL 1095
Cdd:pfam12128 725 GAL----------DAQLALLKAAIAARRSGAKAELKA--LETWYKRDLASLGvDPDVIAKLKREIRTLER-KIERIAVRR 791
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1496288037 1096 QAALDDHQTLQEQY----DALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDEL 1144
Cdd:pfam12128 792 QEVLRYFDWYQETWlqrrPRLATQLSNIERAISELQQQLARLIADTKLRRAKL 844
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
530-851 |
2.13e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 530 KSLATKIRGHNRELSEASVQSNTSDESQGSENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADL---KGQVESL 606
Cdd:TIGR02169 705 DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLhklEEALNDL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 607 MAKHEGGDINTIT------EDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNssELENSLKEKDEVIAQLQEE 680
Cdd:TIGR02169 785 EARLSHSRIPEIQaelsklEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI--DLKEQIKSIEKEIENLNGK 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 681 GEKLARQqlqhsniIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRsiaAKEELEVNQIEAVYRLTTANKKLETELIE 760
Cdd:TIGR02169 863 KEELEEE-------LEELEAALRDLESRLGDLKKERDELEAQLRELER---KIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 761 TKSLLDDTTHKLE--GSRASLEGARRELNELQRSSAELA----RRAAGHQQAQDQQRAADEELARLRAELQQL--RADMV 832
Cdd:TIGR02169 933 LSEIEDPKGEDEEipEEELSLEDVQAELQRVEEEIRALEpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAIleRIEEY 1012
|
330 340
....*....|....*....|.
gi 1496288037 833 NEEKK--WVSRYESVRAELQE 851
Cdd:TIGR02169 1013 EKKKRevFMEAFEAINENFNE 1033
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
555-972 |
2.48e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 555 ESQGSENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLK---GQVESLMAKheggdintITEDYTQRMSALEK 631
Cdd:pfam12128 611 EALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRrlfDEKQSEKDK--------KNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 632 KFQQAIREKDQLRKQLDSLKAE--SSSRKNSSELENSLKE----KDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKD- 704
Cdd:pfam12128 683 RLNSLEAQLKQLDKKHQAWLEEqkEQKREARTEKQAYWQVvegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLAs 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 705 ---NEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEA--------VYRLTTANKKLETELIETKSLLDDT---TH 770
Cdd:pfam12128 763 lgvDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETwlqrrprlATQLSNIERAISELQQQLARLIADTklrRA 842
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 771 KLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRA--ELQQLRADMVNEEKKWVSRYESV--- 845
Cdd:pfam12128 843 KLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQleDLKLKRDYLSESVKKYVEHFKNViad 922
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 846 --RAELQESREALAAQEGARapadTAAVLRQLAQLQHAALRSATAHSHALrQKDLALAEVERSLAIAVEreqisreecvA 923
Cdd:pfam12128 923 hsGSGLAETWESLREEDHYQ----NDKGIRLLDYRKLVPYLEQWFDVRVP-QSIMVLREQVSILGVDLT----------E 987
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1496288037 924 LQQRLADVDQQLSSVRDQLQRlSGTEEQHLQAIRRLEGDLASKTSELES 972
Cdd:pfam12128 988 FYDVLADFDRRIASFSRELQR-EVGEEAFFEGVSESAVRIRSKVSELEY 1035
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
575-796 |
2.91e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 575 LEARENRLLEMSRSNADLAESNADLKGQVESLMAKheggdintitedytqrmsalEKKFQQAIREKDQLRKQLDSLKAES 654
Cdd:TIGR04523 491 LKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK--------------------IEKLESEKKEKESKISDLEDELNKD 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 655 SSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDneqvikgLRDKIAEQTTELDRLKRSIA-AK 733
Cdd:TIGR04523 551 DFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD-------LIKEIEEKEKKISSLEKELEkAK 623
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288037 734 EElevnqieavyrlttaNKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAEL 796
Cdd:TIGR04523 624 KE---------------NEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKES 671
|
|
| TolC |
COG1538 |
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; |
837-1152 |
3.33e-04 |
|
Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 441147 [Multi-domain] Cd Length: 367 Bit Score: 44.26 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 837 KWVSRYESVRAELQESREALAAQEGARApADTAAVLRQLAQLQhaALRSATAHSHALRQKDLALA----EVERSLAIAVE 912
Cdd:COG1538 48 KRRARIEAAKAQAEAAEADLRAARLDLA-AEVAQAYFDLLAAQ--EQLALAEENLALAEELLELAraryEAGLASRLDVL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 913 REQISREEcvaLQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLE 992
Cdd:COG1538 125 QAEAQLAQ---ARAQLAQAEAQLAQARNALALLLGLPPPAPLDLPDPLPPLPPLPPSLPGLPSEALERRPDLRAAEAQLE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 993 AQLADEKNAldtekkrNAILQEQVSVRCERGDVSPSQSVISDSLSASLwhseegrttptgsALCVEDTLAQLTRRDGELR 1072
Cdd:COG1538 202 AAEAEIGVA-------RAAFLPSLSLSASYGYSSSDDLFSGGSDTWSV-------------GLSLSLPLFDGGRNRARVR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1073 ALALQRDSLLAE-RDTLRQHRARLQAALDDHQTLQEQYDALlqmygekEEQMAELRLDLQDVTQLYKAQLDELIALKQAA 1151
Cdd:COG1538 262 AAKAQLEQAEAQyEQTVLQALQEVEDALAALRAAREQLEAL-------EEALEAAEEALELARARYRAGLASLLDVLDAQ 334
|
.
gi 1496288037 1152 Q 1152
Cdd:COG1538 335 R 335
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
630-773 |
3.45e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 630 EKKFQQAIREKDQLRKQLDSLKaesssrKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVI 709
Cdd:TIGR04523 369 QNEIEKLKKENQSYKQEIKNLE------SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 710 KGLRDKIAEQTTELDRLKRSiaaKEELEvNQIEAvyrLTTANKKLETELIETKSLLDDTTHKLE 773
Cdd:TIGR04523 443 KDLTNQDSVKELIIKNLDNT---RESLE-TQLKV---LSRSINKIKQNLEQKQKELKSKEKELK 499
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
923-1152 |
3.47e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 923 ALQQRLADVDQQLSSVRDQLQRLsgteEQHLQAIRRLEG--DLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKN 1000
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEA----EAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1001 ALDTEKKRNAILQEQVSVRCERGDVSPSQSVISDsLSASLwhseeGRTTPTgsalcVEDTLAQLTRRDGELRALALQ-RD 1079
Cdd:COG3206 248 QLGSGPDALPELLQSPVIQQLRAQLAELEAELAE-LSARY-----TPNHPD-----VIALRAQIAALRAQLQQEAQRiLA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1496288037 1080 SLLAERDTLRQHRARLQAALddhqtlqEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQ 1152
Cdd:COG3206 317 SLEAELEALQAREASLQAQL-------AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEA 382
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
882-1124 |
3.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 882 ALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEG 961
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 962 DLASKTSELESMCAEHAAQLSSL-RTAHAQLEAQLADEKNALDTEKKRNAIlqeqvsvrcerGDVSPSQSVISDSLSASL 1040
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRLQYL-----------KYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1041 WHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQRDSLLAE-RDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEK 1119
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARlEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
....*
gi 1496288037 1120 EEQMA 1124
Cdd:COG4942 240 AERTP 244
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
908-1153 |
3.57e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 3.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 908 AIAVEREQISR-EECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHL-----QAIRRLEGDLASKTSELESMCAEHAAQL 981
Cdd:COG4913 243 ALEDAREQIELlEPIRELAERYAAARERLAELEYLRAALRLWFAQRRlelleAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 982 SSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERgdvspsqsviSDSLSASLwhseegrttptgsALCVEDTL 1061
Cdd:COG4913 323 EELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR----------LEALLAAL-------------GLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1062 AQLTRRDGELRALALQRDSLLAE-RDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQ 1140
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEAlEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAE 459
|
250
....*....|....*.
gi 1496288037 1141 LD---ELIALKQAAQR 1153
Cdd:COG4913 460 LPfvgELIEVRPEEER 475
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
777-1153 |
4.00e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 44.85 E-value: 4.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 777 ASLEGARRELNELQRSSAELARRAAGHQQAqdqqraadEELAR--LRAELQQLRADMVNEEKKWVSRYESVRAELQESRE 854
Cdd:COG3899 735 LPPDPEEEYRLALLLELAEALYLAGRFEEA--------EALLEraLAARALAALAALRHGNPPASARAYANLGLLLLGDY 806
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 855 ALAAQEGARA---------PADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREecvALQ 925
Cdd:COG3899 807 EEAYEFGELAlalaerlgdRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAA---AAA 883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 926 QRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTE 1005
Cdd:COG3899 884 AALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAA 963
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1006 KKRNAILQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQRDSLLAER 1085
Cdd:COG3899 964 AAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAAL 1043
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 1086 DTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQR 1153
Cdd:COG3899 1044 ALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAAL 1111
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
563-862 |
4.20e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 44.29 E-value: 4.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 563 RLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESL--MAKHEGGDINTITED---YTQRMSALEKKFQQAI 637
Cdd:pfam19220 80 AAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALerQLAAETEQNRALEEEnkaLREEAQAAEKALQRAE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 638 REKDQLRKQLDSLKAESSSRKN---------------SSELENSLkekDEVIAQLQEEGEKLARQQLQHSniiKKLRAKD 702
Cdd:pfam19220 160 GELATARERLALLEQENRRLQAlseeqaaelaeltrrLAELETQL---DATRARLRALEGQLAAEQAERE---RAEAQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 703 KDNEQvikgLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGA 782
Cdd:pfam19220 234 EAVEA----HRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERR 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 783 RRELNELQRSSAELARRAA----GHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAA 858
Cdd:pfam19220 310 TQQFQEMQRARAELEERAEmltkALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAERAL 389
|
....
gi 1496288037 859 QEGA 862
Cdd:pfam19220 390 AQGA 393
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
564-943 |
4.42e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 564 LMRRLCEMAELLEARENRLLEMSRSNADLAESNA--DLKGQVESLMAKHEGGDINTI---------TEDYTQRMSALEKK 632
Cdd:pfam05483 386 LQKKSSELEEMTKFKNNKEVELEELKKILAEDEKllDEKKQFEKIAEELKGKEQELIfllqarekeIHDLEIQLTAIKTS 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 633 FQQAIREKDQLRKQLDSLK---AESSSRKNSSELENS--LKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQ 707
Cdd:pfam05483 466 EEHYLKEVEDLKTELEKEKlknIELTAHCDKLLLENKelTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 708 VIKGLRDKIAEQTTELDRLKRSIAAKEElevnqieavyrlttANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELN 787
Cdd:pfam05483 546 LRDELESVREEFIQKGDEVKCKLDKSEE--------------NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIE 611
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 788 ELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELqesreaLAAQEGARAPAD 867
Cdd:pfam05483 612 ELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKL------LEEVEKAKAIAD 685
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 868 TAAVLRQLAQL--QHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQ 943
Cdd:pfam05483 686 EAVKLQKEIDKrcQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
633-1152 |
4.72e-04 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 44.41 E-value: 4.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 633 FQQAIREKDQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQ--HSNIIKKLRAKDKdNEQVIK 710
Cdd:PRK10246 372 FSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLValHGQIVPQQKRLAQ-LQVAIQ 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 711 GLRDKIAEQTTELDRLKRSIAAKEElEVNQIEAVYRLTTANKKLETELIETKS-----LLDDTTHKLEGSRASLE--GAR 783
Cdd:PRK10246 451 NVTQEQTQRNAALNEMRQRYKEKTQ-QLADVKTICEQEARIKDLEAQRAQLQAgqpcpLCGSTSHPAVEAYQALEpgVNQ 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 784 RELNELQRSSAELArraaghqqaqdqqraadEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGAR 863
Cdd:PRK10246 530 SRLDALEKEVKKLG-----------------EEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITL 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 864 APADTAAVL--------RQLAQL-QHAALRSA-TAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQ 933
Cdd:PRK10246 593 QPQDDIQPWldaqeeheRQLRLLsQRHELQGQiAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQ 672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 934 QLSSVRDQLQRLSGTEEQhlqaIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQ---LEAQLadeknaldtekkrnA 1010
Cdd:PRK10246 673 EAQSWQQRQNELTALQNR----IQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQclsLHSQL--------------Q 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1011 ILQEQVSVRCERgdVSPSQSVISDSLSASLWHSEEGRTtptgSALCVEDTLAQLTRRDGELRALALQRDSLLAE-RDTLR 1089
Cdd:PRK10246 735 TLQQQDVLEAQR--LQKAQAQFDTALQASVFDDQQAFL----AALLDEETLTQLEQLKQNLENQRQQAQTLVTQtAQALA 808
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288037 1090 QHRARLQAALD---DHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQ 1152
Cdd:PRK10246 809 QHQQHRPDGLDltvTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQ 874
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
624-762 |
5.86e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 44.05 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 624 QRMSALEKKFQQAIREKDQLRKQLDSLKAEsssrknsselensLKEKdevIAQLQEEGEKL-ARQQLQHSNIIKKLRakd 702
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEE-------------LEEK---KEKLQEEEDKLlEEAEKEAQQAIKEAK--- 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 703 KDNEQVIKGLRDKIAEQTTeldrlkrSIAAKEelevnQIEAVYRLTTANKKLETELIETK 762
Cdd:PRK00409 584 KEADEIIKELRQLQKGGYA-------SVKAHE-----LIEARKRLNKANEKKEKKKKKQK 631
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
815-1015 |
6.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 815 EELARLRAELQQLRAdmvnEEKKWVSRYESVRAELQESREALAAQEGARapADTAAVLRQLAQLQHAALRSATAHSHALR 894
Cdd:COG4942 34 QEIAELEKELAALKK----EEKALLKQLAALERRIAALARRIRALEQEL--AALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 895 QKDLALAEVERSLAIAVereQISREECVALQQRLADVDQQLSSVRDQLQRLsgteEQHLQAIRRLEGDLASKTSELESMC 974
Cdd:COG4942 108 ELLRALYRLGRQPPLAL---LLSPEDFLDAVRRLQYLKYLAPARREQAEEL----RADLAELAALRAELEAERAELEALL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1496288037 975 AEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQ 1015
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
530-735 |
7.58e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 530 KSLATKIRGHNRELSEASVQSNTSDESQGSENERLMRRLCEMAELLEArenrllemsrsnadlaesnADLKGQVESLMAK 609
Cdd:COG4942 65 AALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA-------------------LYRLGRQPPLALL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 610 HEGGDINTitedyTQRMSALEKKFQQAIREK-DQLRKQLDSLKAesssrkNSSELENSLKEKDEVIAQLQEEGEKLARQQ 688
Cdd:COG4942 126 LSPEDFLD-----AVRRLQYLKYLAPARREQaEELRADLAELAA------LRAELEAERAELEALLAELEEERAALEALK 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1496288037 689 LQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEE 735
Cdd:COG4942 195 AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
777-1021 |
7.60e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 7.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 777 ASLEGARRELNELQRssaELARRAAGHQQAQDQQRAADEELARLRAELQQLradMVNEEKKWVSRYESVRAELQESREA- 855
Cdd:PRK04863 837 AELRQLNRRRVELER---ALADHESQEQQQRSQLEQAKEGLSALNRLLPRL---NLLADETLADRVEEIREQLDEAEEAk 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 856 --LAAQEGARAPADT-AAVLR----QLAQLQhAALRSATAHSHALRQKDLALAEV-ER----SLAIAVEREQISREECVA 923
Cdd:PRK04863 911 rfVQQHGNALAQLEPiVSVLQsdpeQFEQLK-QDYQQAQQTQRDAKQQAFALTEVvQRrahfSYEDAAEMLAKNSDLNEK 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 924 LQQRLADVDQQLSSVRDQLQrlsGTEEQHLQAIRRLEgDLASKTSELESMCAEHAAQLSSLR-TAHAQLEAQLADEKNAL 1002
Cdd:PRK04863 990 LRQRLEQAEQERTRAREQLR---QAQAQLAQYNQVLA-SLKSSYDAKRQMLQELKQELQDLGvPADSGAEERARARRDEL 1065
|
250 260
....*....|....*....|....
gi 1496288037 1003 DTE-----KKRNAILQEQVSVRCE 1021
Cdd:PRK04863 1066 HARlsanrSRRNQLEKQLTFCEAE 1089
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
619-837 |
1.36e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.21 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 619 TEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNS-SELENSLKEKDEVIAQLQEEgeklaRQQLQhsNIIKK 697
Cdd:COG1340 3 TDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKrDELNAQVKELREEAQELREK-----RDELN--EKVKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 698 LRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEEL--EVNQIEavYRLTTAN-------------KKLETELIETK 762
Cdd:COG1340 76 LKEERDELNEKLNELREELDELRKELAELNKAGGSIDKLrkEIERLE--WRQQTEVlspeeekelvekiKELEKELEKAK 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288037 763 SLLDDTThKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEElarLRAELQQLRADMVNEEKK 837
Cdd:COG1340 154 KALEKNE-KLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADE---LRKEADELHKEIVEAQEK 224
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
700-972 |
1.42e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 700 AKDKDNEQVIKGLRDKIAEQTTELDRLKrsiAAKEELEVNQIEAVYRLTTANKkleteLIETKSLLDDTTH-----KLEG 774
Cdd:COG3096 829 AFAPDPEAELAALRQRRSELERELAQHR---AQEQQLRQQLDQLKEQLQLLNK-----LLPQANLLADETLadrleELRE 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 775 SRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRA-----DMVNEEKKWVSRYESVR--- 846
Cdd:COG3096 901 ELDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQqifalSEVVQRRPHFSYEDAVGllg 980
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 847 --AELQES-REALAAQEGARAPADTAavLRQlAQLQHA-ALRSATAHSHALRQKDLALAEVERSL--------AIAVERE 914
Cdd:COG3096 981 enSDLNEKlRARLEQAEEARREAREQ--LRQ-AQAQYSqYNQVLASLKSSRDAKQQTLQELEQELeelgvqadAEAEERA 1057
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 915 QISREEcvaLQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELES 972
Cdd:COG3096 1058 RIRRDE---LHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQ 1112
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
628-1008 |
1.42e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 628 ALEKKFQQAIREKDQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQ 707
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 708 VIKGLRDKIAEQTTELDRLKRsiaaKEELEVNQIEAVYRLTTANKKLE--TELIETKSLLDDTTHKLEGSRASLEGARRE 785
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKK----KAEEDKKKADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAEEAKKADEAKKKA 1453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 786 lnELQRSSAELARRAAGHQQAQDQQRAADE----ELARLRAELQQLRADMVNEEKKWVSRYESVRA--ELQESREALAAQ 859
Cdd:PTZ00121 1454 --EEAKKAEEAKKKAEEAKKADEAKKKAEEakkaDEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaeEAKKADEAKKAE 1531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 860 EGARA-PADTAAVLRQLAQLQHA-ALRSAtahsHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSS 937
Cdd:PTZ00121 1532 EAKKAdEAKKAEEKKKADELKKAeELKKA----EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKM 1607
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1496288037 938 VRDQLQRlsgTEEQHLQAIR-RLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKR 1008
Cdd:PTZ00121 1608 KAEEAKK---AEEAKIKAEElKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
817-1015 |
1.47e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 817 LARLRAELQQLRADmVNEEKKWVSRYESVRAELQESREALAAQEGAR-APADTAAVLRQLAQLQhAALRSATAHSHALRQ 895
Cdd:COG4913 612 LAALEAELAELEEE-LAEAEERLEALEAELDALQERREALQRLAEYSwDEIDVASAEREIAELE-AELERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 896 kdlalaeverslaiavereqisreecvaLQQRLADVDQQLSSVRDQLQRLsgteeqhlqaiRRLEGDLASKTSELESMCA 975
Cdd:COG4913 690 ----------------------------LEEQLEELEAELEELEEELDEL-----------KGEIGRLEKELEQAEEELD 730
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1496288037 976 EHAAQLSSL-----RTAHAQLEAQLADEKNALDTEKKRNAILQEQ 1015
Cdd:COG4913 731 ELQDRLEAAedlarLELRALLEERFAAALGDAVERELRENLEERI 775
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
847-1126 |
2.03e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 847 AELQESREALAaQEGARAPADTAAVLRQLAQL-----QHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREEC 921
Cdd:PRK04863 789 EQLRAEREELA-ERYATLSFDVQKLQRLHQAFsrfigSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRSQL 867
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 922 VALQQRLADVDQQLSSV----RDQLQ-RLSGTEEQHLQA------IRRLEGDLasktSELESmcaehaaQLSSLRT---A 987
Cdd:PRK04863 868 EQAKEGLSALNRLLPRLnllaDETLAdRVEEIREQLDEAeeakrfVQQHGNAL----AQLEP-------IVSVLQSdpeQ 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 988 HAQLEAQLADEKNALDTEKKRNAILQEQVSVRcergdvspsqsvisdslsASLWHSEEGRTTPTGSALcVEdtlaQLTRR 1067
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAKQQAFALTEVVQRR------------------AHFSYEDAAEMLAKNSDL-NE----KLRQR 993
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1496288037 1068 dgeLRALALQRDSLlaeRDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAEL 1126
Cdd:PRK04863 994 ---LEQAEQERTRA---REQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
662-828 |
2.07e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 40.66 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 662 ELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQI 741
Cdd:pfam15619 15 ELQNELAELQSKLEELRKENRLLKRLQKRQEKALGKYEGTESELPQLIARHNEEVRVLRERLRRLQEKERDLERKLKEKE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 742 EAVYRLTTANKKLEtELIETKSLL--DDTTHKLEGSRASLEGARRELNELQRsSAELARRAAGH--QQAQDQQRAADEEL 817
Cdd:pfam15619 95 AELLRLRDQLKRLE-KLSEDKNLAerEELQKKLEQLEAKLEDKDEKIQDLER-KLELENKSFRRqlAAEKKKHKEAQEEV 172
|
170
....*....|.
gi 1496288037 818 ARLRAELQQLR 828
Cdd:pfam15619 173 KILQEEIERLQ 183
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
815-991 |
2.57e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.28 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 815 EELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGARAPADtAAVLRQLAQLQhaalrsatahshalr 894
Cdd:pfam09787 61 EEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELEEQLATERSARREAE-AELERLQEELR--------------- 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 895 qkdlalaeverslaiAVEREQisREECVALQQRLADVDQQLSSVRDQL--QRLSGTEEQHLQA-IRRLEGDLASKTSELE 971
Cdd:pfam09787 125 ---------------YLEEEL--RRSKATLQSRIKDREAEIEKLRNQLtsKSQSSSSQSELENrLHQLTETLIQKQTMLE 187
|
170 180
....*....|....*....|
gi 1496288037 972 SMCAEHAAQLSSLRTAHAQL 991
Cdd:pfam09787 188 ALSTEKNSLVLQLERMEQQI 207
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
559-1008 |
3.12e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 559 SENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLMAKHEGgdintiTEDytqRMSALEKKfqqaIR 638
Cdd:PRK03918 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE------LEE---RIEELKKE----IE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 639 EKDQLRKQLDSLKAESssrKNSSELEnslKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQV------IKGL 712
Cdd:PRK03918 277 ELEEKVKELKELKEKA---EEYIKLS---EFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLeelkkkLKEL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 713 RDKIAEQTTELDRLKRSIAAKEELE-VNQIEAVYRLTTANKKLEtELIETKSLLDDTTHKLEGSRASLEGARRELNElQR 791
Cdd:PRK03918 351 EKRLEELEERHELYEEAKAKKEELErLKKRLTGLTPEKLEKELE-ELEKAKEEIEEEISKITARIGELKKEIKELKK-AI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 792 SSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMvneeKKWVSRYESVRAELQESREALAAQEGARAPADTAAV 871
Cdd:PRK03918 429 EELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKEL----KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQ 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 872 LR----QLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLS- 946
Cdd:PRK03918 505 LKeleeKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGf 584
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 947 GTEEQHLQAIRRLEG------DLASKTSELESMCAEhaaqLSSLRTAHAQLEAQLADEKNALDTEKKR 1008
Cdd:PRK03918 585 ESVEELEERLKELEPfyneylELKDAEKELEREEKE----LKKLEEELDKAFEELAETEKRLEELRKE 648
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
849-1150 |
3.57e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 849 LQESREALAAQEGARAPADTaavLRQLAQLQHAA----------LRSATAHSHALRQKDLALAEVERSLAIAV------- 911
Cdd:PRK10929 119 LEKSRQAQQEQDRAREISDS---LSQLPQQQTEArrqlneierrLQTLGTPNTPLAQAQLTALQAESAALKALvdelela 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 912 -----EREQISREECVALQQRLADVDQQLSSVRDQLQRLsgteeqhlqaiRRLEGDLASKTSElesMCAEHAAQLSSLRT 986
Cdd:PRK10929 196 qlsanNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ-----------RQREAERALESTE---LLAEQSGDLPKSIV 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 987 AHAQLEAQLADeknALDTEKKRNAILQEQvsvrcERGDVSPSQSViSDSLSA----SLWHSEegrTTPTGSALcvedtLA 1062
Cdd:PRK10929 262 AQFKINRELSQ---ALNQQAQRMDLIASQ-----QRQAASQTLQV-RQALNTlreqSQWLGV---SNALGEAL-----RA 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1063 QLTRR---------DGELRALALQRdslLAERDTLRQHRARLQAALDDHQTLQEQYDALLqmygekEEQMAELRLDLQDV 1133
Cdd:PRK10929 325 QVARLpempkpqqlDTEMAQLRVQR---LRYEDLLNKQPQLRQIRQADGQPLTAEQNRIL------DAQLRTQRELLNSL 395
|
330
....*....|....*..
gi 1496288037 1134 TQLYKAQLDELIALKQA 1150
Cdd:PRK10929 396 LSGGDTLILELTKLKVA 412
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
624-1126 |
3.64e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 624 QRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKnsSELENSLKEKDEVIAQLQEEGEKLARQqlqhsniIKKLRAKDK 703
Cdd:COG3096 532 QNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL--EELEEQAAEAVEQRSELRQQLEQLRAR-------IKELAARAP 602
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 704 --------------------DNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEavyRLTTANKKLETELIETKS 763
Cdd:COG3096 603 awlaaqdalerlreqsgealADSQEVTAAMQQLLEREREATVERDELAARKQALESQIE---RLSQPGGAEDPRLLALAE 679
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 764 LL---------DDTThkLE----------GSR-----ASLEGARRELNELQRSSAELARrAAGHQQAQDQQRAADEELAR 819
Cdd:COG3096 680 RLggvllseiyDDVT--LEdapyfsalygPARhaivvPDLSAVKEQLAGLEDCPEDLYL-IEGDPDSFDDSVFDAEELED 756
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 820 lraelqqlrADMV-NEEKKW-VSRYESV----RA-------ELQESREALAAQEgarapADTAAVLRQLAQLQHAALRSA 886
Cdd:COG3096 757 ---------AVVVkLSDRQWrYSRFPEVplfgRAarekrleELRAERDELAEQY-----AKASFDVQKLQRLHQAFSQFV 822
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 887 TAHSH---------ALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSV-----RDQLQRLSGTEEQH 952
Cdd:COG3096 823 GGHLAvafapdpeaELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAnlladETLADRLEELREEL 902
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 953 LQAIrrlegDLASKTSELESMCAEHAAQLSSLRT---AHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERG-DVSPS 1028
Cdd:COG3096 903 DAAQ-----EAQAFIQQHGKALAQLEPLVAVLQSdpeQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPHFSyEDAVG 977
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1029 Q----SVISDSLSASLWHSEEGRTTptgsalcvedtlaqltrrdgelralalqrdsllaERDTLRQHRARLQAALDDHQT 1104
Cdd:COG3096 978 LlgenSDLNEKLRARLEQAEEARRE----------------------------------AREQLRQAQAQYSQYNQVLAS 1023
|
570 580
....*....|....*....|..
gi 1496288037 1105 LQEQYDALLQMYGEKEEQMAEL 1126
Cdd:COG3096 1024 LKSSRDAKQQTLQELEQELEEL 1045
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
781-1153 |
3.70e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 41.77 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 781 GARRELNELQRSSAELARRAAGHqqaqdqqraaDEELARLRAELQQLRADMVNEEkkwvsryesvRAELQESREALAAQE 860
Cdd:COG3899 699 GERDRAARLLLRAARRALARGAY----------AEALRYLERALELLPPDPEEEY----------RLALLLELAEALYLA 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 861 G--ARAPADTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVER-SLAIAVEREQISREECVALQQRLADVDQQLSS 937
Cdd:COG3899 759 GrfEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLLLGDyEEAYEFGELALALAERLGDRRLEARALFNLGF 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 938 VRDQLQRLSGTEEQHLQAIRRLE--GDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQ 1015
Cdd:COG3899 839 ILHWLGPLREALELLREALEAGLetGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAEL 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1016 VSVRCERGDVSPSQSVISDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGELRALALQRDSLLAERDTLRQHRARL 1095
Cdd:COG3899 919 ARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAAL 998
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 1096 QAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQR 1153
Cdd:COG3899 999 LALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAA 1056
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
815-1152 |
4.04e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.03 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 815 EELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEgARAPADTAAVLRQLAQLQHAALRSATAHSHALR 894
Cdd:pfam07888 37 EECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRV-AELKEELRQSREKHEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 895 QKDLALAEVERSLAIAVEREQISReecvALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMC 974
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIK----TLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 975 AEhaaqLSSLRTAHAQLEAQLADeknaldtekkrnaiLQEQVSVRCERGDVSPSQSVISDSLSASLWHSEEgrttptgsA 1054
Cdd:pfam07888 192 KE----FQELRNSLAQRDTQVLQ--------------LQDTITTLTQKLTTAHRKEAENEALLEELRSLQE--------R 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1055 LCVEDTLAQLTRRdgELRALALQRDSLLAErdtlrQHRARLQAAlddhQTLQEQYDALLQMYgEKEEQMAELRLDLQDVT 1134
Cdd:pfam07888 246 LNASERKVEGLGE--ELSSMAAQRDRTQAE-----LHQARLQAA----QLTLQLADASLALR-EGRARWAQERETLQQSA 313
|
330
....*....|....*...
gi 1496288037 1135 QLYKAQLDELIALKQAAQ 1152
Cdd:pfam07888 314 EADKDRIEKLSAELQRLE 331
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
629-1017 |
4.15e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 4.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 629 LEKKFQQAIREKDQLRKQL----------DSLKAESSSRKNS-----SELENSLKEKDEVIAQLQEEGEKL--------- 684
Cdd:pfam01576 31 LEKKHQQLCEEKNALQEQLqaetelcaeaEEMRARLAARKQEleeilHELESRLEEEEERSQQLQNEKKKMqqhiqdlee 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 685 -------ARQQLQHSNIikKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAVYRLTtankKLETE 757
Cdd:pfam01576 111 qldeeeaARQKLQLEKV--TTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLS----KLKNK 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 758 LIETKSLLDDTTHKLEGSRASLEGARR----ELNELQRSSAELARRAAghqQAQDQQRAADEELARLRAELQQLRADMVN 833
Cdd:pfam01576 185 HEAMISDLEERLKKEEKGRQELEKAKRklegESTDLQEQIAELQAQIA---ELRAQLAKKEEELQAALARLEEETAQKNN 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 834 EEKKwVSRYESVRAELQESreaLAAQEGARAPA-----DTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLa 908
Cdd:pfam01576 262 ALKK-IRELEAQISELQED---LESERAARNKAekqrrDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKAL- 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 909 iavereqisREECVALQQRLADVDQQLSSVRDQLQrlsgteeQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAH 988
Cdd:pfam01576 337 ---------EEETRSHEAQLQEMRQKHTQALEELT-------EQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAK 400
|
410 420 430
....*....|....*....|....*....|....*.
gi 1496288037 989 A-------QLEAQLADEKNALDTEKKRNAILQEQVS 1017
Cdd:pfam01576 401 QdsehkrkKLEGQLQELQARLSESERQRAELAEKLS 436
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
559-1002 |
4.18e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 559 SENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKgqveslmakheggDINTITEdytQRMSALEKK---FQQ 635
Cdd:pfam10174 345 TEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLK-------------DMLDVKE---RKINVLQKKienLQE 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 636 AIREKDQ----LRKQLDSLKAESSSRKNS-SELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKlraKDKDNEQVIK 710
Cdd:pfam10174 409 QLRDKDKqlagLKERVKSLQTDSSNTDTAlTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVS 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 711 GLRDKIAEQTTELDRLK------RSIAAKEELEVNQIE-AVYRLTTANKKLETELIETKSLLDDTTHKLEGSR--ASLEG 781
Cdd:pfam10174 486 ALQPELTEKESSLIDLKehasslASSGLKKDSKLKSLEiAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDriRLLEQ 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 782 -ARRELNELQRSSAELARRAAGHQQAQDQQRAADEELArlraELQQLRADMVNEEKKWVSRYESVRAElqESREALAAQE 860
Cdd:pfam10174 566 eVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIA----ELESLTLRQMKEQNKKVANIKHGQQE--MKKKGAQLLE 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 861 GARAPADTAAvlrqlaqlqhaalrsataHSHALRQKDLALAEVERSlaiavereqisREECVALQQRLADVDQQLSSVRD 940
Cdd:pfam10174 640 EARRREDNLA------------------DNSQQLQLEELMGALEKT-----------RQELDATKARLSSTQQSLAEKDG 690
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1496288037 941 QLQRLSGTEEQHLQAIRRLEGD-LASKTSELESMCAehAAQLSSLRTAHAQLE-AQLADEKNAL 1002
Cdd:pfam10174 691 HLTNLRAERRKQLEEILEMKQEaLLAAISEKDANIA--LLELSSSKKKKTQEEvMALKREKDRL 752
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
590-744 |
4.53e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 590 ADLAESNADLKGQVESLMAKHEGgdINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAESSSRKNSSELENSLKE 669
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAA--LEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1496288037 670 kdevIAQLQEEGEKLARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKIAEQTTELDRLKRSIAAKEELEVNQIEAV 744
Cdd:COG1579 98 ----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
845-998 |
5.71e-03 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 40.73 E-value: 5.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 845 VRAELQESREALAA--QEGARAPADTAAVLRQLAQLqhAALRSATAHshalrqkdlALAEVERSLAiAVEREQisreecv 922
Cdd:pfam04632 161 LRARLRDALRLAAAalAGAPGAEAFEAARLRLAADI--LALEALRSH---------AAFESPRGRA-RARALR------- 221
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288037 923 ALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQlsSLRTAHAQLEAQLADE 998
Cdd:pfam04632 222 RLLARMLALLPRLRSLARLLARLRTEGAGTVPELAALLDELAAWEAALAAEALQAALA--ALRARLRALRPALPLD 295
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
731-1098 |
5.82e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 731 AAKEELEVNQieavYRLTTANKKLEtELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQ 810
Cdd:PRK04863 297 TSRRQLAAEQ----YRLVEMARELA-ELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVV 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 811 RAADEELARLRAELQQLRADmVNEEKKWVSRYESvRAELQESR-----EALAAQEGAR--------APADTAAVLRQL-A 876
Cdd:PRK04863 372 EEADEQQEENEARAEAAEEE-VDELKSQLADYQQ-ALDVQQTRaiqyqQAVQALERAKqlcglpdlTADNAEDWLEEFqA 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 877 QLQHA--ALRSA----TAHSHALRQKDLALAEVeRSLAIAVEREQISREECVALQQ--RLADVDQQLSSVRDQLQRLSGT 948
Cdd:PRK04863 450 KEQEAteELLSLeqklSVAQAAHSQFEQAYQLV-RKIAGEVSRSEAWDVARELLRRlrEQRHLAEQLQQLRMRLSELEQR 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 949 EEQHLQAIRRLE------GDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQvsvrcer 1022
Cdd:PRK04863 529 LRQQQRAERLLAefckrlGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR------- 601
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1496288037 1023 gdvSPSQSVISDSLSASLWHSEEGRTTPTGsalcVEDTLAQLTRRdgeLRALALQRDSLLAERDTLRQHRARLQAA 1098
Cdd:PRK04863 602 ---APAWLAAQDALARLREQSGEEFEDSQD----VTEYMQQLLER---ERELTVERDELAARKQALDEEIERLSQP 667
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
865-1124 |
6.02e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 865 PADTAAVLRQLAQL---QHAALRSATAhSHALRQKDLALAEVERSLAIAVEREQISREEC--VALQQRLADVDQQLSSVR 939
Cdd:COG3206 147 PELAAAVANALAEAyleQNLELRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 940 DQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAehAAQLSSLRTAHAQLEAQLADEKNALdTEKKRNAI-LQEQVsv 1018
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY-TPNHPDVIaLRAQI-- 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1019 rcergdvspsqsvisDSLSASLwhSEEGRTTPTGsalcVEDTLAQLTRRDGELRAlalQRDSLLAERDTLRQHRARLQAA 1098
Cdd:COG3206 301 ---------------AALRAQL--QQEAQRILAS----LEAELEALQAREASLQA---QLAQLEARLAELPELEAELRRL 356
|
250 260
....*....|....*....|....*.
gi 1496288037 1099 LDDHQTLQEQYDALLQMYGEKEEQMA 1124
Cdd:COG3206 357 EREVEVARELYESLLQRLEEARLAEA 382
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
560-1153 |
6.15e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 560 ENERLMRRLCEMAELLEARENRLLEMSRSNADLAESNADLKGQVESLMAKHEGGDINTITEDYTQRmsaLEKKFQQAIRE 639
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL---LKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 640 KDQLRKQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEK---LARQQLQHSNIIKKLRAKDKDNEQVIKGLRDKI 716
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEeeeLEKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 717 AEQTTELDRLKRSIAAKEELEVNQIeavYRLTTANKKLETELIETKSLLDDTTHKLEGSRASLEGARRELNELQRSSAEL 796
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLE---DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 797 ARRAAghqqaqdQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRA--ELQESREALAAQEGARAPADTAAVLRQ 874
Cdd:pfam02463 471 EDLLK-------ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLAliKDGVGGRIISAHGRLGDLGVAVENYKV 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 875 LAQLQHAALRSATAHSHALRQKdLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQ 954
Cdd:pfam02463 544 AISTAVIVEVSATADEVEERQK-LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRA 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 955 AIRRLEGDLASKTSELESmcaeHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVSVRCERGDVSPSQSVIsd 1034
Cdd:pfam02463 623 KVVEGILKDTELTKLKES----AKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR-- 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1035 slsaslwhseegrttptgsalCVEDTLAQLTRRDGELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQE------- 1107
Cdd:pfam02463 697 ---------------------RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEeeeeeks 755
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1496288037 1108 QYDALLQMYGEKEEQMAELRLDLQDVTQLYKAQLDELIALKQAAQR 1153
Cdd:pfam02463 756 RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE 801
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1058-1153 |
6.38e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 6.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1058 EDTLAQLTRRDGEL-RALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELrldlqdvtql 1136
Cdd:PRK09039 52 DSALDRLNSQIAELaDLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGEL---------- 121
|
90
....*....|....*..
gi 1496288037 1137 yKAQLDELIALKQAAQR 1153
Cdd:PRK09039 122 -AQELDSEKQVSARALA 137
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
925-1153 |
6.53e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 6.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 925 QQRLADVDQQLSSVRD-------QLQRLS------------GTEEQHLQA------IRRLEGDLASKTSELEsmcaEHAA 979
Cdd:COG1196 178 ERKLEATEENLERLEDilgelerQLEPLErqaekaeryrelKEELKELEAellllkLRELEAELEELEAELE----ELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 980 QLSSLRTAHAQLEAQLADEKNALDTEKKRNAILQEQVsvrcergdvspsqsvisdslsaslwhseegrttptgsalcvED 1059
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEE-----------------------------------------YE 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1060 TLAQLTRRDGELRALALQRDSLLAERDTLRQHRARLQAALDDHQTLQEQYDALLQmygEKEEQMAELRLDLQDVTQLYKA 1139
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE---EAEEELEEAEAELAEAEEALLE 369
|
250
....*....|....
gi 1496288037 1140 QLDELIALKQAAQR 1153
Cdd:COG1196 370 AEAELAEAEEELEE 383
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
558-999 |
7.15e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.05 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 558 GSENERLMRRLCEMAEllearenRLLEMSRSNADLAESNADLKGQVESLMAKHeggdintitedytQRMSALEKKFQQAI 637
Cdd:pfam19220 2 GQRNELLRVRLGEMAD-------RLEDLRSLKADFSQLIEPIEAILRELPQAK-------------SRLLELEALLAQER 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 638 REKDQLRKQLDSLKAESSSRknSSELENSLKEKDEVIAQLQEEGEKLARQQLQhsniIKKLRAKDKDNEQVIKGLRDKIA 717
Cdd:pfam19220 62 AAYGKLRRELAGLTRRLSAA--EGELEELVARLAKLEAALREAEAAKEELRIE----LRDKTAQAEALERQLAAETEQNR 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 718 EQTTELDRLKRSIAAKEElevnqieavyRLTTANKKLeTELIETKSLLDDTTHKLegsRASLEGARRELNELQRSSAELA 797
Cdd:pfam19220 136 ALEEENKALREEAQAAEK----------ALQRAEGEL-ATARERLALLEQENRRL---QALSEEQAAELAELTRRLAELE 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 798 RRAAGHqqaqdqqraadeeLARLRAELQQLrADMVNEEKKWVSRYESVRAELQESREALAAQ-EGARAPADTAAVLrqLA 876
Cdd:pfam19220 202 TQLDAT-------------RARLRALEGQL-AAEQAERERAEAQLEEAVEAHRAERASLRMKlEALTARAAATEQL--LA 265
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 877 QLQHaALRSATAhshALRQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAI 956
Cdd:pfam19220 266 EARN-QLRDRDE---AIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAKDAAL 341
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1496288037 957 RRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEK 999
Cdd:pfam19220 342 ERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRER 384
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
859-1136 |
7.29e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 859 QEGARApaDTAAVLRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIA--------VEREQISREECV---ALQQR 927
Cdd:pfam15921 305 QEQARN--QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLAnseltearTERDQFSQESGNlddQLQKL 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 928 LADV---DQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMcaehAAQLSSLRT-AHAQLEAQLAdeknald 1003
Cdd:pfam15921 383 LADLhkrEKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRL----EALLKAMKSeCQGQMERQMA------- 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1004 TEKKRNAILQEQVSVRCERGDVSPSQSVISDSLSASlwhseegRTTPTGSALCVEDTLAQLTRRDGELRALALQRDSLLA 1083
Cdd:pfam15921 452 AIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAK-------KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRS 524
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1496288037 1084 ERDTLRQHRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQL 1136
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQL 577
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
765-886 |
7.81e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.03 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 765 LDDTTH--KLEGSRASLEGARRELNELQRSS---AELARRAAGHQQAQDQQRAADEELARLR----------AELQQLRA 829
Cdd:COG1566 76 LDPTDLqaALAQAEAQLAAAEAQLARLEAELgaeAEIAAAEAQLAAAQAQLDLAQRELERYQalykkgavsqQELDEARA 155
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1496288037 830 DmvneekkwvsrYESVRAELQESREALA-AQEGARAPADTAAVLRQLAQLQhAALRSA 886
Cdd:COG1566 156 A-----------LDAAQAQLEAAQAQLAqAQAGLREEEELAAAQAQVAQAE-AALAQA 201
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
713-953 |
8.99e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 8.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 713 RDKIAEQTTELDRLKRSIAAKEElEVNQIEAVYRLTTANKKLETELIETKSLLDDtthkLEGSRASLEGARRELNELQRS 792
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEE-RLEALEAELDALQERREALQRLAEYSWDEID----VASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 793 SAELARraaghqqaqdqqraadeelarLRAELQQLRADMVNEEKKWVSRYESVRAELQESREALAAQEGARAPADTAAVL 872
Cdd:COG4913 684 SDDLAA---------------------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 873 RQLAQLQHAALRSATAHSHALRQKdlALAEVERSLAIAVEREQISREECVALQQR--------LADVDQQLSSVRDQLQR 944
Cdd:COG4913 743 ARLELRALLEERFAAALGDAVERE--LRENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPEYLAL 820
|
....*....
gi 1496288037 945 LSGTEEQHL 953
Cdd:COG4913 821 LDRLEEDGL 829
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
624-1138 |
9.24e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 624 QRMSALEKKFQQAIREKDQLR----KQLDSLKAESSSRKNSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLR 699
Cdd:TIGR00618 386 QQKTTLTQKLQSLCKELDILQreqaTIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 700 AKDKDNEQVIKGLRdKIAEQTTELDRLKrsIAAKEELEVNQIEAVYRLTTANKKLETELIETKSL-----LDDTTHKLEG 774
Cdd:TIGR00618 466 QSLKEREQQLQTKE-QIHLQETRKKAVV--LARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmqrGEQTYAQLET 542
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 775 SRASLEG-ARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAELQESR 853
Cdd:TIGR00618 543 SEEDVYHqLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 854 EALAAQegarapaDTAAVLRQLAQLQHAALrsatAHSHALrQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQ 933
Cdd:TIGR00618 623 PEQDLQ-------DVRLHLQQCSQELALKL----TALHAL-QLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKE 690
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 934 QLSSVRDQL---QRLSGTEEQHLQAIRRLEGDLASKTSELESmcaEHAAQLSSLRTAHAQLEAQLADEKNALDTEKKRNA 1010
Cdd:TIGR00618 691 QLTYWKEMLaqcQTLLRELETHIEEYDREFNEIENASSSLGS---DLAAREDALNQSLKELMHQARTVLKARTEAHFNNN 767
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 1011 ilqEQVSVRCERGDVSpsqsvisDSLSASLWHSEEGRTTPTGSALCVEDTLAQLTRRDGelralalqrDSLLAERDTLRQ 1090
Cdd:TIGR00618 768 ---EEVTAALQTGAEL-------SHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDE---------DILNLQCETLVQ 828
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 1496288037 1091 HRARLQAALDDHQTLQEQYDALLQMYGEKEEQMAELRLDLQDVTQLYK 1138
Cdd:TIGR00618 829 EEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| HrpB7 |
pfam09486 |
Bacterial type III secretion protein (HrpB7); This entry represents proteins encoded by genes ... |
841-979 |
9.63e-03 |
|
Bacterial type III secretion protein (HrpB7); This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Pssm-ID: 370523 [Multi-domain] Cd Length: 157 Bit Score: 38.19 E-value: 9.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 841 RYESVRAELQESREALAAQEGARAPADTAAVL-RQLAQLQHAALRSATAHSHALRQKDlaLAEVERSLAIAVEREQISRE 919
Cdd:pfam09486 16 RYQRLRAELEAARAALAQAEAALAAAQAQAEQaRDRVRAHEERLDDLTTGGSPFSAAD--YLACRAYRDVLEGRVGAAEA 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 920 ECVALQQRLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAA 979
Cdd:pfam09486 94 ALAAARQALDAAEDAVAATRRKIARNDAQLDVCRERIARLRRAAERAREDAADEEAEEAA 153
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
614-890 |
9.70e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 614 DINTITEDYTQRMSALEKKFQQAIREKDQLRKQLDSLKAEsssrknSSELENSLKEKDEVIAQLQEEGEKLARQQLQHSN 693
Cdd:COG3883 27 ELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAE------IDKLQAEIAEAEAEIEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 694 IIKKLRA--KDKDNEQVIKGL--RDKIAEQTTE-LDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDT 768
Cdd:COG3883 101 SVSYLDVllGSESFSDFLDRLsaLSKIADADADlLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 769 THKLEGSRASLEGARRELNELQRSSAELARRAAGHQQAQDQQRAADEELARLRAELQQLRADMVNEEKKWVSRYESVRAE 848
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAG 260
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1496288037 849 LQESREALAAQEGARAPADTAAVLRQLAQLQHAALRSATAHS 890
Cdd:COG3883 261 SAGAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGGGAASGG 302
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
555-1019 |
9.89e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 9.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 555 ESQGSENERLMRRLCEMAELLEARENRLLEMSRSnADLAESNADLKGQVESLMAKHEGGDINTITEDYtqrmSALEKKFQ 634
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEER-HELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 635 QAIREKDQLRKQLDSLKAESSSR-KNSSELEN------------SLKEKDEVIAQLQEEGEKLARQQLQHSNIIKKLRAK 701
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELkKAIEELKKakgkcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 702 DKDNEQVIKGLRDKIAEQTTeLDRLKrsiAAKEELEVNQIEAVYRLTTANKKLETELIetksllddtthKLEGSRASLEG 781
Cdd:PRK03918 482 LRELEKVLKKESELIKLKEL-AEQLK---ELEEKLKKYNLEELEKKAEEYEKLKEKLI-----------KLKGEIKSLKK 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 782 ARRELNELQRSSAELARRaaghqqaqdqQRAADEELARLRAELqqlradmvneEKKWVSRYESVRAELQESREALaaqeg 861
Cdd:PRK03918 547 ELEKLEELKKKLAELEKK----------LDELEEELAELLKEL----------EELGFESVEELEERLKELEPFY----- 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 862 arapadtaavlrqlaqlqhaalrsatahshalrQKDLALAEVERSLAIAVEREQISREECVALQQRLADVDQQLSSVRDQ 941
Cdd:PRK03918 602 ---------------------------------NEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 942 LQRL--SGTEEQHlqaiRRLEGDLASKTSELesmcaehaaqlsslrtahAQLEAQLADEKNALDTEKKRNAILQEQVSVR 1019
Cdd:PRK03918 649 LEELekKYSEEEY----EELREEYLELSREL------------------AGLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
618-1015 |
9.99e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.09 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 618 ITEDYtQRMSALEKKFQQAIREKDqlrKQLDSLKAESSSRKNS-SELENSLKEKDEVIAQLqEEGEKLARQQLQHSNiiK 696
Cdd:pfam05483 217 LKEDH-EKIQHLEEEYKKEINDKE---KQVSLLLIQITEKENKmKDLTFLLEESRDKANQL-EEKTKLQDENLKELI--E 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 697 KLRAKDKDNEQVIKGLRDKIAEQTT---ELDRLKRSIAAKEELEVNQIEAVYRLTTANKKLETELIETKSLLDDTthkLE 773
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKAleeDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL---LR 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 774 GSRASLEGARRELN----ELQRSSAELARRAaghqQAQDQQRAADEELARLRAELQQLradmVNEEKKWVSRYESVRAEL 849
Cdd:pfam05483 367 TEQQRLEKNEDQLKiitmELQKKSSELEEMT----KFKNNKEVELEELKKILAEDEKL----LDEKKQFEKIAEELKGKE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 850 QESREALAAQEgarapadtaavlRQLAQLQHAALRSATAHSHALRQKDLALAEVERSLAIAVEREQISRE---ECVALQQ 926
Cdd:pfam05483 439 QELIFLLQARE------------KEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKlllENKELTQ 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1496288037 927 RLADVDQQLSSVRDQLQRLSGTEEQHLQAIRRLEGDLASKTSELESMCAEHAAQLSSLRTAHAQLEAQLADEKNALDTEK 1006
Cdd:pfam05483 507 EASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
....*....
gi 1496288037 1007 KRNAILQEQ 1015
Cdd:pfam05483 587 KQMKILENK 595
|
|
| |
